EsuBft1028_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1028_12a-0001
Unique Name	EsuBft1028_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_481	contig	Scaffold_481:317508..319961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	28532.XP_010534024.1
ProteomeId	EsuBft1028_12
Protein domains	Coil
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	uncharacterized mitochondrial protein g00810 os:arabidopsis thaliana gn: g00810 pe:4 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	35493\|Streptophyta
Length	2398
Evalue	6.21e-13
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38A0D@33090\|Viridiplantae,3GW7H@35493\|Streptophyta,3I0KZ@3699\|Brassicales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	transposition, RNA-mediated
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1028_12a	EsuBft1028_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_481 317508..319961 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1028_12a-0001-exon	agat-exon-7214	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 317508..319610 +
EsuBft1028_12a-0001-exon	EsuBft1028_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_481 319667..319961 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1028_12a-0001-exon	agat-five_prime_utr-158	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_481 317508..317562 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1028_12a-0001-cds	EsuBft1028_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_481 317563..319610 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1028_12a-0001	EsuBft1028_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_481 317563..319961 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_481:317508..319961+
coding sequence from alignment at Scaffold_481:317508..319961+

spliced messenger RNA

>EsuBft1028_12a-0001 ID=EsuBft1028_12a-0001|Name=EsuBft1028_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2398bp|location=Sequence derived from alignment at Scaffold_481:317508..319961+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGCGTAGGCCGCAAACACTCTAGAGTTTGCCCCTCGAGGGAAGCCACA
TCGGGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGAA
CAGATCCGCCTGCCGGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGTTT
GCAACGGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAGTCGGTGAAGA
AGAAGGAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGTGGCTGG
GTTGCTGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTCGGCGG
TGGCGGGGGATTTCTCCAGCAGCCAACGAGAGATAGTGGGCAAGGACCAC
GGCCGCTGCTTGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTT
GGACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAG
GGGGTTAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCCACGCCC
CGGCGAAGCGGCACTGGGATGCCATACAGAAGATCCTCGGCTACCTGAAA
GGCAGGGACCTCGGTATCACCTACCAACGGGGATTGGGGTTAGGGCTTGC
CGTCATGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCTCGTTCGCCG
TGCGTGCGGTAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGAT
GCCATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCAT
CACCTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTA
GCTACGCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTGGCGACGACG
GTCGGAGGTACCGTAGTCAGCCATGGTAGCAAGATGCAGAGCATCNNN

protein sequence of EsuBft1028_12a-0001

>EsuBft1028_12 ID=EsuBft1028_12|Name=EsuBft1028_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=781bp
MSSAGDEERAAASGEQIRLPVQEGRDAELASLQRQISQLAALVEESVKKK
EPGSVVADAASRGGWVAAPRGQREEPTLPLGGGGGFLQQPTRDSGQGPRP
LLEGGWASRSGANPVGPAGVGPGIGPDYGEARGLNXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPDVSFAVRAVARHAHAPA
KRHWDAIQKILGYLKGRDLGITYQRGLGLGLAVMMWVSTFSRPDVSFAVR
AVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASY
ADTEDRRSVSGLATTVGGTVVSHGSKMQSIX

mRNA from alignment at Scaffold_481:317508..319961+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1028_12a-0001 ID=EsuBft1028_12a-0001|Name=EsuBft1028_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2454bp|location=Sequence derived from alignment at Scaffold_481:317508..319961+ (Ectocarpus subulatus male Bft15b)
GTGGCGTAGGCCGCAAACACTCTAGAGTTTGCCCCTCGAGGGAAGCCACA
TCGGGATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGAA
CAGATCCGCCTGCCGGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGTTT
GCAACGGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAGTCGGTGAAGA
AGAAGGAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGTGGCTGG
GTTGCTGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTCGGCGG
TGGCGGGGGATTTCTCCAGCAGCCAACGAGAGATAGTGGGCAAGGACCAC
GGCCGCTGCTTGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTT
GGACCAGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAG
GGGGTTAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TCCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCCACGCCC
CGGCGAAGCGGCACTGGGATGCCATACAGAAGATCCTCGGCTACCTGAAA
GGCAGGGACCTCGGTATCACCTACCAACGGGGATTGGGGTTAGGGCTTGC
CGTGTATNGCGAGAGGATGAGGAAGGAGGGGAGTGGCCGGTGAGGGAGGC
CATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCTCGT
TCGCCGTGCGTGCGGTAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCAC
TGGGATGCCATACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCT
CGGCATCACCTACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAG
ACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTGGCG
ACGACGGTCGGAGGTACCGTAGTCAGCCATGGTAGCAAGATGCAGAGCAT
CNNN

Coding sequence (CDS) from alignment at Scaffold_481:317508..319961+

>EsuBft1028_12a-0001 ID=EsuBft1028_12a-0001|Name=EsuBft1028_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2343bp|location=Sequence derived from alignment at Scaffold_481:317508..319961+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCTGGAGACGAAGAGCGCGCTGCTGCGAGCGGAGAACAGAT
CCGCCTGCCGGTGCAGGAGGGCCGCGACGCGGAGCTTGCAAGTTTGCAAC
GGCAGATTTCGCAATTGGCGGCCCTGGTGGAGGAGTCGGTGAAGAAGAAG
GAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGTGGCTGGGTTGC
TGCCCCCAGAGGCCAACGAGAAGAGCCCACGCTGCCGCTCGGCGGTGGCG
GGGGATTTCTCCAGCAGCCAACGAGAGATAGTGGGCAAGGACCACGGCCG
CTGCTTGAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTTGGACC
AGCCGGAGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAGGGGGT
TAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGCCACGCCCACGCCCCGGCG
AAGCGGCACTGGGATGCCATACAGAAGATCCTCGGCTACCTGAAAGGCAG
GGACCTCGGTATCACCTACCAACGGGGATTGGGGTTAGGGCTTGCCGTCA
TGATGTGGGTGTCGACTTTCTCGCGTCCAGACGTCTCGTTCGCCGTGCGT
GCGGTAGCGCGCCACGCCCACGCCCCGGCGAAGCGGCACTGGGATGCCAT
ACAGAAGATCCTCGGCTACCTGAAAGGGACGAGGGACCTCGGCATCACCT
ACCAACGGGGATCGGGGTTAGGGCTGGCCGTGTACGTAGACGCTAGCTAC
GCCGACACGGAGGATAGGCGTTCGGTGTCAGGGTTGGCGACGACGGTCGG
AGGTACCGTAGTCAGCCATGGTAGCAAGATGCAGAGCATCNNN