EsuBft1027_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1027_9a-0001
Unique NameEsuBft1027_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_257contigScaffold_257:11293..11810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1027_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length51
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_9aEsuBft1027_9aEctocarpus subulatus male Bft15bgeneScaffold_257 11293..11810 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_9a-0001-exonEsuBft1027_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_257 11293..11810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_9a-0001-cdsEsuBft1027_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_257 11293..11523 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_9a-0001-exonagat-three_prime_utr-261Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_257 11524..11810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_9a-0001EsuBft1027_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_257 11293..11523 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1027_9a-0001 ID=EsuBft1027_9a-0001|Name=EsuBft1027_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_257:11293..11810+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTGCCCAAGGAAAAGGGCCTACCAGAACGAGAGACTGACACGCG
ACAACTCGCGCAGCCGGAAACAACCGCTTTGCGAGTACACATGNTCGCGG
GCACGGCGCACGGCAGCAGGACGGACTGCGACGACAGCACCGTGCTGTGC
ACCAGTGGGGTGACCGCGTGGAGACGACGCACGTGGCGAAGAGTCGTACT
GCAACCAGCAAGATGGGTAATACCCCCGTGACGACCCGGAAGGGCCAATC
CCAGGAGATTCGGTAGGCAAGGGAGAAGAGAGACGGGCAATGGGCGTGCC
CAAGGAAAAGGGCCTACCAGAACGAGAGACTGACACGCGACAACTCGCGC
AGCCGGAAACAACCGCTTTGCGAGTACACATGGCCATGACGCAGACGCGA
AAGACTACAGCGGTACTTCAAACCAAAAGCCAACAACGACCAACAACGCA
ATGGATCTCGCACCCAGGGAAGAAACAAGCGCCGAGGACGCCAATGTGAT
ACTTGGTATTCGGGCTCT
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protein sequence of EsuBft1027_9a-0001

>EsuBft1027_9 ID=EsuBft1027_9|Name=EsuBft1027_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=76bp
MGVPKEKGLPERETDTRQLAQPETTALRVHMXAGTAHGSRTDCDDSTVLC
TSGVTAWRRRTWRRVVLQPARWVIPP
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mRNA from alignment at Scaffold_257:11293..11810+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1027_9a-0001 ID=EsuBft1027_9a-0001|Name=EsuBft1027_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_257:11293..11810+ (Ectocarpus subulatus male Bft15b)
ATGGGCGTGCCCAAGGAAAAGGGCCTACCAGAACGAGAGACTGACACGCG
ACAACTCGCGCAGCCGGAAACAACCGCTTTGCGAGTACACATGNTCGCGG
GCACGGCGCACGGCAGCAGGACGGACTGCGACGACAGCACCGTGCTGTGC
ACCAGTGGGGTGACCGCGTGGAGACGACGCACGTGGCGAAGAGTCGTACT
GCAACCAGCAAGATGGGTAATACCCCCGTGACGACCCGGAAGGGCCAATC
CCAGGAGATTCGGTAGGCAAGGGAGAAGAGAGACGGGCAATGGGCGTGCC
CAAGGAAAAGGGCCTACCAGAACGAGAGACTGACACGCGACAACTCGCGC
AGCCGGAAACAACCGCTTTGCGAGTACACATGGCCATGACGCAGACGCGA
AAGACTACAGCGGTACTTCAAACCAAAAGCCAACAACGACCAACAACGCA
ATGGATCTCGCACCCAGGGAAGAAACAAGCGCCGAGGACGCCAATGTGAT
ACTTGGTATTCGGGCTCT
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Coding sequence (CDS) from alignment at Scaffold_257:11293..11810+

>EsuBft1027_9a-0001 ID=EsuBft1027_9a-0001|Name=EsuBft1027_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=231bp|location=Sequence derived from alignment at Scaffold_257:11293..11810+ (Ectocarpus subulatus male Bft15b)
ATGGGCGTGCCCAAGGAAAAGGGCCTACCAGAACGAGAGACTGACACGCG
ACAACTCGCGCAGCCGGAAACAACCGCTTTGCGAGTACACATGNTCGCGG
GCACGGCGCACGGCAGCAGGACGGACTGCGACGACAGCACCGTGCTGTGC
ACCAGTGGGGTGACCGCGTGGAGACGACGCACGTGGCGAAGAGTCGTACT
GCAACCAGCAAGATGGGTAATACCCCCGTGA
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