EsuBft1027_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1027_8a-0001
Unique NameEsuBft1027_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_257contigScaffold_257:19229..20866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1027_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length159
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_8aEsuBft1027_8aEctocarpus subulatus male Bft15bgeneScaffold_257 19229..20866 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_8a-0001-exonagat-exon-93328Ectocarpus subulatus male Bft15bexonScaffold_257 19229..19270 +
EsuBft1027_8a-0001-exonEsuBft1027_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_257 19313..20866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_8a-0001-cdsEsuBft1027_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_257 19229..19270 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_8a-0001-exonagat-three_prime_utr-260Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_257 19385..20866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_8a-0001EsuBft1027_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_257 19229..19384 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1027_8a-0001 ID=EsuBft1027_8a-0001|Name=EsuBft1027_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1596bp|location=Sequence derived from alignment at Scaffold_257:19229..20866+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCACACAGCACAGTGCAGTGATTATACTCATCTCCAGGTAAAATC
TCTGGTCACAGACAGCGCCCTCAATAGTGCCGGTCCTGCACCATTGAGGG
CGGTCCCGGCATAGTTAGTTCAGGTTGGGCACCGCGGTGCCCCGCAATAT
TATAGTGCAGGTCGGACACACACACATGACGGCCTCGTCACGACCCTCAC
GGGCGGGCAGGCTGAGAACACATAGATAGGTGGCACCATCTGTCTCACAG
CCTACATCTGGCAGACAGTGCCTTCGACCCTTCGACGGCGGTGGTATCTC
CTTCTCTCACGGAATCACAAATCTTTGTTTGGACAACGGGTGGGTGCAAC
CTGGATTTATTTCCTGCTACTACTAATACTACACAGCAGTACAGCAGTAC
TACTACCGCGGCGGCTGCGGATACTAGATTCCGGGACGTGTTCACCTGAA
GGAAAGCCAAGAGAACCTGCGAGCAGGACTTGGCTCCCTCGTGACTTCCT
AGTGGCTTGCTAGGTTCGGACGAGGGCATGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTGCATCAGTGGCTTGCTAGGTTCGGACGAGGGCATGTGTGGAGC
TATGGCAGTGTACGTGCTGCTATTTTGTTCTGAGTCACCTGTCTATTTAG
CTAGCTGCTGACACGATAACCGGTCGCCCCGGTGGTCTAGTGGGTAGCCT
CGCAGCCTGCTAAGGGCCAGGTCATGGGTTCGAGTCCCGGCAGAGAGAGT
TTTTTTCTCACTAAATAAATCCTGGTCTAGGATGAAAGCGACGCGCTGCA
AAGCTCGTTTGTTAGTAAACCATAATCGACTTCGTAAGTCGCGAGGGAAG
GGATTGCTGTACCCTTCTCGCGATAAAAATACCTCAGGCATGAACCGCAG
GAGGGGGTCCAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTCCAGC
TACTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGACAACAGAGTCCAATG
ATGGGAGAAAAAACAAAAAAAAAAAAACGATGACTGCTGGATCTTTGGGA
GTGTTACGATTATCAAATTGGGAGATAGATGCAGCATACCACGATATATA
TCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTATTTTGCTGTCCTCTG
CTCTTTGCATCAGTGGCTTCCTAGGTTCGGGCGAGGGCGTGTGTGGAGCT
ATGGCAGTGTACGTGTTGCTATTTTGTTTTGAGTCACCTAGCTGCTGACA
CTTGGGAGTGCACGATAATCAAATTGGGAGATGCCGCATACCACGATATC
CTGGCTTCGGCTGGGCTTGAAATAGACCTTTTGCTGTCCTCCGCTCTTTG
CATCAGTGGCTTCCTAGATTCGAGCGAGGGCATTTGTGTGGCTGAGATGT
GTGTCTACGTTAAAGAACATGCAAAGAGAGTCGTATTGGCATTCGCATCA
AGCGCATTGCGCATTTTTCGAATTTCGGCCCCCTTTCAGGGACCTTGATT
GTTACCCGCTGGCACTGACGTCTTTTAATCGGTCAGCCGGTTAGCG
back to top

protein sequence of EsuBft1027_8a-0001

>EsuBft1027_8 ID=EsuBft1027_8|Name=EsuBft1027_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=37bp
MHHTAQCSDYTHLQVKSLVTDSALNSAGPAPLRAVPA
back to top

mRNA from alignment at Scaffold_257:19229..20866+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1027_8a-0001 ID=EsuBft1027_8a-0001|Name=EsuBft1027_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1638bp|location=Sequence derived from alignment at Scaffold_257:19229..20866+ (Ectocarpus subulatus male Bft15b)
ATGCACCACACAGCACAGTGCAGTGATTATACTCATCTCCAGGTACAGTA
CTGGGCCCTATATAGTGCAGGTTGAATAGTGCAGGTAAAATCTCTGGTCA
CAGACAGCGCCCTCAATAGTGCCGGTCCTGCACCATTGAGGGCGGTCCCG
GCATAGTTAGTTCAGGTTGGGCACCGCGGTGCCCCGCAATATTATAGTGC
AGGTCGGACACACACACATGACGGCCTCGTCACGACCCTCACGGGCGGGC
AGGCTGAGAACACATAGATAGGTGGCACCATCTGTCTCACAGCCTACATC
TGGCAGACAGTGCCTTCGACCCTTCGACGGCGGTGGTATCTCCTTCTCTC
ACGGAATCACAAATCTTTGTTTGGACAACGGGTGGGTGCAACCTGGATTT
ATTTCCTGCTACTACTAATACTACACAGCAGTACAGCAGTACTACTACCG
CGGCGGCTGCGGATACTAGATTCCGGGACGTGTTCACCTGAAGGAAAGCC
AAGAGAACCTGCGAGCAGGACTTGGCTCCCTCGTGACTTCCTAGTGGCTT
GCTAGGTTCGGACGAGGGCATGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG
CATCAGTGGCTTGCTAGGTTCGGACGAGGGCATGTGTGGAGCTATGGCAG
TGTACGTGCTGCTATTTTGTTCTGAGTCACCTGTCTATTTAGCTAGCTGC
TGACACGATAACCGGTCGCCCCGGTGGTCTAGTGGGTAGCCTCGCAGCCT
GCTAAGGGCCAGGTCATGGGTTCGAGTCCCGGCAGAGAGAGTTTTTTTCT
CACTAAATAAATCCTGGTCTAGGATGAAAGCGACGCGCTGCAAAGCTCGT
TTGTTAGTAAACCATAATCGACTTCGTAAGTCGCGAGGGAAGGGATTGCT
GTACCCTTCTCGCGATAAAAATACCTCAGGCATGAACCGCAGGAGGGGGT
CCAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTCCAGCTACTAGAA
GTGGAGGATAGGGGCCAGAGGGGCAGACAACAGAGTCCAATGATGGGAGA
AAAAACAAAAAAAAAAAAACGATGACTGCTGGATCTTTGGGAGTGTTACG
ATTATCAAATTGGGAGATAGATGCAGCATACCACGATATATATCCTGGCT
TCGGCTGGGCTTGAAATAACCCTTTTATTTTGCTGTCCTCTGCTCTTTGC
ATCAGTGGCTTCCTAGGTTCGGGCGAGGGCGTGTGTGGAGCTATGGCAGT
GTACGTGTTGCTATTTTGTTTTGAGTCACCTAGCTGCTGACACTTGGGAG
TGCACGATAATCAAATTGGGAGATGCCGCATACCACGATATCCTGGCTTC
GGCTGGGCTTGAAATAGACCTTTTGCTGTCCTCCGCTCTTTGCATCAGTG
GCTTCCTAGATTCGAGCGAGGGCATTTGTGTGGCTGAGATGTGTGTCTAC
GTTAAAGAACATGCAAAGAGAGTCGTATTGGCATTCGCATCAAGCGCATT
GCGCATTTTTCGAATTTCGGCCCCCTTTCAGGGACCTTGATTGTTACCCG
CTGGCACTGACGTCTTTTAATCGGTCAGCCGGTTAGCG
back to top

Coding sequence (CDS) from alignment at Scaffold_257:19229..20866+

>EsuBft1027_8a-0001 ID=EsuBft1027_8a-0001|Name=EsuBft1027_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=114bp|location=Sequence derived from alignment at Scaffold_257:19229..20866+ (Ectocarpus subulatus male Bft15b)
ATGCACCACACAGCACAGTGCAGTGATTATACTCATCTCCAGGTAAAATC
TCTGGTCACAGACAGCGCCCTCAATAGTGCCGGTCCTGCACCATTGAGGG
CGGTCCCGGCATAG
back to top