EsuBft1027_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1027_5a-0001
Unique NameEsuBft1027_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_257contigScaffold_257:45205..46115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1027_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length91
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_005700.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_5aEsuBft1027_5aEctocarpus subulatus male Bft15bgeneScaffold_257 45205..46115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_5a-0001-exonEsuBft1027_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_257 45205..46115 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_5a-0001-exonagat-three_prime_utr-257Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_257 45205..45824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_5a-0001-cdsEsuBft1027_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_257 45825..46115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_5a-0001EsuBft1027_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_257 45825..46115 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1027_5a-0001 ID=EsuBft1027_5a-0001|Name=EsuBft1027_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_257:45205..46115- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGACGGCCACCCGTTCAGATATTGCTTCCTCCGCCCCGGAGCCGC
GAAACAGATCATAATTCAACGTCAGCACCCCCCCTCGCTCGTTTTTTGGC
TGCGTACAGGAGGACGAAGAATTATTTTTTCTTCCAATCGGCAGAGCATT
TATCTACGGAGTCTCCAGAGGGAGGGGGGACGGGTGGGCATGGCGAGCGA
GGTTCTTCCGGCCTCCGATGAAGCTGCTGTACCCAAACAAAGCTGGCACC
TATCGCCTGGTTCAGGCCCTCGACATGTGCTTACGTCGTGATCTGAATCG
GTCGACCCCATGGTGACACGGCGCACTTTGCGGTAATAGTTATTTAGTCG
CCGTTCGTGAGCACTACGTCGACGAGAGGAGACTGCTTGTTTTGACATCT
TCTGGGAATACTATTTCTTGTATTTTTCCGGTAAGGTAAACGTGTTCAAA
GCTTCTCGAATACATGTAGTCGTATCCCGGTACGAAGAGGTGATGTCTTG
CTTCTCTTGCGCTTGTACCCCGTGCCGCATGTCGTACGGTAATCGTTGGT
TGTGTAGAAGCGCGCGGTTTCGTGATATACAAGTGTTGATGGGATACTAT
AAGTAGAGAGGAACAGGCAATCCATATTTCGGGTTCCTCTGAAAAGGGGA
CCGCCTTTATTTCCAGTTTCTGTCGGAAAAGACGAAAATACGAGGGGAAG
CAGTTATGTCTTCCGTTCTCGGGACAATGGCGGTGTCGGTTCGAATGGTG
AAATACTGCTCCTCCGTGGTGATGGTTGCGTCGTGGCGGGAGATTGGGTT
GGTCTTGTGGTCGGGAGACGGGCCACGTTTTCTAAGTGATTTGAGAGGTT
TCCTTTTGGGTTGAGCAAACGCATGGCTGTGTTGTCGCGTGATTTGCGAG
GTCTGAGATCT
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protein sequence of EsuBft1027_5a-0001

>EsuBft1027_5 ID=EsuBft1027_5|Name=EsuBft1027_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=96bp
MPDGHPFRYCFLRPGAAKQIIIQRQHPPSLVFWLRTGGRRIIFSSNRQSI
YLRSLQREGGRVGMASEVLPASDEAAVPKQSWHLSPGSGPRHVLTS
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mRNA from alignment at Scaffold_257:45205..46115-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1027_5a-0001 ID=EsuBft1027_5a-0001|Name=EsuBft1027_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_257:45205..46115- (Ectocarpus subulatus male Bft15b)
ATGCCGGACGGCCACCCGTTCAGATATTGCTTCCTCCGCCCCGGAGCCGC
GAAACAGATCATAATTCAACGTCAGCACCCCCCCTCGCTCGTTTTTTGGC
TGCGTACAGGAGGACGAAGAATTATTTTTTCTTCCAATCGGCAGAGCATT
TATCTACGGAGTCTCCAGAGGGAGGGGGGACGGGTGGGCATGGCGAGCGA
GGTTCTTCCGGCCTCCGATGAAGCTGCTGTACCCAAACAAAGCTGGCACC
TATCGCCTGGTTCAGGCCCTCGACATGTGCTTACGTCGTGATCTGAATCG
GTCGACCCCATGGTGACACGGCGCACTTTGCGGTAATAGTTATTTAGTCG
CCGTTCGTGAGCACTACGTCGACGAGAGGAGACTGCTTGTTTTGACATCT
TCTGGGAATACTATTTCTTGTATTTTTCCGGTAAGGTAAACGTGTTCAAA
GCTTCTCGAATACATGTAGTCGTATCCCGGTACGAAGAGGTGATGTCTTG
CTTCTCTTGCGCTTGTACCCCGTGCCGCATGTCGTACGGTAATCGTTGGT
TGTGTAGAAGCGCGCGGTTTCGTGATATACAAGTGTTGATGGGATACTAT
AAGTAGAGAGGAACAGGCAATCCATATTTCGGGTTCCTCTGAAAAGGGGA
CCGCCTTTATTTCCAGTTTCTGTCGGAAAAGACGAAAATACGAGGGGAAG
CAGTTATGTCTTCCGTTCTCGGGACAATGGCGGTGTCGGTTCGAATGGTG
AAATACTGCTCCTCCGTGGTGATGGTTGCGTCGTGGCGGGAGATTGGGTT
GGTCTTGTGGTCGGGAGACGGGCCACGTTTTCTAAGTGATTTGAGAGGTT
TCCTTTTGGGTTGAGCAAACGCATGGCTGTGTTGTCGCGTGATTTGCGAG
GTCTGAGATCT
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Coding sequence (CDS) from alignment at Scaffold_257:45205..46115-

>EsuBft1027_5a-0001 ID=EsuBft1027_5a-0001|Name=EsuBft1027_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=291bp|location=Sequence derived from alignment at Scaffold_257:45205..46115- (Ectocarpus subulatus male Bft15b)
ATGCCGGACGGCCACCCGTTCAGATATTGCTTCCTCCGCCCCGGAGCCGC
GAAACAGATCATAATTCAACGTCAGCACCCCCCCTCGCTCGTTTTTTGGC
TGCGTACAGGAGGACGAAGAATTATTTTTTCTTCCAATCGGCAGAGCATT
TATCTACGGAGTCTCCAGAGGGAGGGGGGACGGGTGGGCATGGCGAGCGA
GGTTCTTCCGGCCTCCGATGAAGCTGCTGTACCCAAACAAAGCTGGCACC
TATCGCCTGGTTCAGGCCCTCGACATGTGCTTACGTCGTGA
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