EsuBft1027_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1027_4a-0001
Unique Name	EsuBft1027_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_257	contig	Scaffold_257:51180..52799 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1027_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	162
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_4a	EsuBft1027_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_257 51180..52799 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_4a-0001-exon	EsuBft1027_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_257 51180..52799 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_4a-0001-cds	EsuBft1027_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_257 51180..51509 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_4a-0001-exon	agat-three_prime_utr-256	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_257 51510..52799 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_4a-0001	EsuBft1027_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_257 51180..51509 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_257:51180..52799+
coding sequence from alignment at Scaffold_257:51180..52799+

spliced messenger RNA

>EsuBft1027_4a-0001 ID=EsuBft1027_4a-0001|Name=EsuBft1027_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1620bp|location=Sequence derived from alignment at Scaffold_257:51180..52799+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGCTATGAAACTAGATGGCGTACAGTCTCTCCCGCTGGAGTTCAA
CTCGTACGCTGAGACAGTGATTTCGATGCTGCGGGACAGGAGCTCCGGCC
TGACGGACGCCAAGTTGCTGAAGCACCTCCAGAACGTGTGCATCGTGTAC
GCGTGCTTGGCGGTCAAGCGCAACGCCGGGATTGTCTCCACACAGGCCAA
GCACGCGGCAGCGGCGCAGGGGTACAAGGACATCGCTGTCCCTGGCTTCT
TCAAGTGGCTCCAGGAAAACTTGGACAAGGAGGATTTCTTCTTGCAGCCG
TGGCTCACGTTCGAGGTCATGGGGAANNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCGTTTGCTGTCGCG
TTCAGACTGTCTCTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGT
CCTCGTCTGTCTTTGGTTTATTTCGTTTTTGTTTTGTTTTTTTTACTGGC
ACGAACTGTTGTTGACCCTTGGGGTCCTTCCGGAAGGCTACCTCCCAGGC
TGGTGGTGCGCACGTTCCACTATTTGTTTATTTATTTGTTTCTGATTCTA
TTGTTTTCTTGTATTTTATC

protein sequence of EsuBft1027_4a-0001

>EsuBft1027_4 ID=EsuBft1027_4|Name=EsuBft1027_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=110bp
MDAMKLDGVQSLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVY
ACLAVKRNAGIVSTQAKHAAAAQGYKDIAVPGFFKWLQENLDKEDFFLQP
WLTFEVMGXX

mRNA from alignment at Scaffold_257:51180..52799+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1027_4a-0001 ID=EsuBft1027_4a-0001|Name=EsuBft1027_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1620bp|location=Sequence derived from alignment at Scaffold_257:51180..52799+ (Ectocarpus subulatus male Bft15b)
ATGGATGCTATGAAACTAGATGGCGTACAGTCTCTCCCGCTGGAGTTCAA
CTCGTACGCTGAGACAGTGATTTCGATGCTGCGGGACAGGAGCTCCGGCC
TGACGGACGCCAAGTTGCTGAAGCACCTCCAGAACGTGTGCATCGTGTAC
GCGTGCTTGGCGGTCAAGCGCAACGCCGGGATTGTCTCCACACAGGCCAA
GCACGCGGCAGCGGCGCAGGGGTACAAGGACATCGCTGTCCCTGGCTTCT
TCAAGTGGCTCCAGGAAAACTTGGACAAGGAGGATTTCTTCTTGCAGCCG
TGGCTCACGTTCGAGGTCATGGGGAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCCCGTTTGCTGTCGCG
TTCAGACTGTCTCTACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGT
CCTCGTCTGTCTTTGGTTTATTTCGTTTTTGTTTTGTTTTTTTTACTGGC
ACGAACTGTTGTTGACCCTTGGGGTCCTTCCGGAAGGCTACCTCCCAGGC
TGGTGGTGCGCACGTTCCACTATTTGTTTATTTATTTGTTTCTGATTCTA
TTGTTTTCTTGTATTTTATC

Coding sequence (CDS) from alignment at Scaffold_257:51180..52799+

>EsuBft1027_4a-0001 ID=EsuBft1027_4a-0001|Name=EsuBft1027_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_257:51180..52799+ (Ectocarpus subulatus male Bft15b)
ATGGATGCTATGAAACTAGATGGCGTACAGTCTCTCCCGCTGGAGTTCAA
CTCGTACGCTGAGACAGTGATTTCGATGCTGCGGGACAGGAGCTCCGGCC
TGACGGACGCCAAGTTGCTGAAGCACCTCCAGAACGTGTGCATCGTGTAC
GCGTGCTTGGCGGTCAAGCGCAACGCCGGGATTGTCTCCACACAGGCCAA
GCACGCGGCAGCGGCGCAGGGGTACAAGGACATCGCTGTCCCTGGCTTCT
TCAAGTGGCTCCAGGAAAACTTGGACAAGGAGGATTTCTTCTTGCAGCCG
TGGCTCACGTTCGAGGTCATGGGGAANNNN