EsuBft1027_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1027_3a-0001
Unique Name	EsuBft1027_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_257	contig	Scaffold_257:54710..59038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1027_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	432
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_3a	EsuBft1027_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_257 54710..59038 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_3a-0001-exon	EsuBft1027_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_257 54710..59038 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_3a-0001-exon	agat-five_prime_utr-154	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_257 54710..54766 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_3a-0001-cds	EsuBft1027_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_257 54767..54946 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_3a-0001-exon	agat-three_prime_utr-255	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_257 54947..59038 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1027_3a-0001	EsuBft1027_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_257 54767..54946 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_257:54710..59038+
coding sequence from alignment at Scaffold_257:54710..59038+

spliced messenger RNA

>EsuBft1027_3a-0001 ID=EsuBft1027_3a-0001|Name=EsuBft1027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4329bp|location=Sequence derived from alignment at Scaffold_257:54710..59038+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATTGCCGCACTACATTCAAATTTCGAACTGTCACGTGCCCCGATC
ACCATACATGTACTATGCGGACAACAGCAGTGTTGAACAAATGCTCAATC
GCGTTAACAGCTGCTTTTGGCGGCAACTCGCTGGCGTTTCCCCCCTCCCC
CTTCAAAAAAGCAACATAACACCACCGGTGGGAACAGCTTTTGAGATGGG
TGGCCCCAGGGCGTACAACATGTTGCGAAGAGAATAAAGTAGACCGCCCA
CCCCCCACCGTGTTTCCCCCCGATCACATAAACTACGAATGCAAGTTGTC
GCGGTGAGACACACAATAAACAACGATACACAGGAGCTGAGAGGTTCATG
GCCTCTTGGCACAAGGGCAAGGAGGAGGCCAGCCGACAACGAGCCATCAA
ACGAGGAGACAGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACG
GGGCGGTAGGGGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGA
GAAGAGACCGACCGCGTGACGTGACATGTTGCGGTCGAATTTCAACGACT
AATTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACTGTCTC
TAGGGATATCCCTGTCTCTGTGCGAGTTTGTTTGTGTCCTCGTCTTTGCT
TTATTCTGTTTTATTTTGTCTTTTGTTTTGTTTTTTACTGGCACGTACCC
CCGCCCCTTCCTTTGGCCGTCGACCTGCCTCCATGTAGTGGGAGGCTACC
CCCCCAGGCTGGTGGTGCGGCCGTTCCACTCGTCTAATTATTTATTTTAT
TTTATTTAAATTGTTTCTGATTCTATTTTGTTTTCTTGTATTTTATCGCT
CTGCTGACCCTTGGGGTCCATTTTATTTTGGTATACCTTTTCTAGGTACG
TTAGCCTGTGACCACGGAAATTGGCCGAGTCAAGTGATGGATTAGTACGG
AGAGATTGAGACAGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTT
AATGTGAAGACAACAACAACAACAACAACACTCATGCACCAAGTCAAAAC
TGTAGTCACAAACCCTTGTGCGTTTCGCAGTGTGTCGTTCTGCCCTCGGT
ACGGTGATCCCCTCCCTGGTCGACCTACTCTACAACGATGATGGAACTTA
TGTGCATGTGGCACACCGGTGCTGTGTCACTTTGGCCGATTGGCATGACT
TCCGGAACAATATTCTAAATCTCAGCGAAATAAACAGTGGTGTGTATTCT
TNAGACCGGGATGGTTTTTAATGTGAAGACAACAACAACAACAACAACAC
TCATGCACCAAGTCAAAACTGTAGTCACAAACCCTTGTGCGTTTCGCAGT
GTGTCGTTCTGCCCTCGGTACGGTGATCCCCTCCCTGGTCGACCTACTCT
ACAACGATGATGGAACTTATGTGCATGTGGCACACCGGTGCTGTGTCACT
TTGGCCGATTGGCATGACTTCCGGAACAATATTCTAAATCTCAGCGAAAT
AAACAGTGGTGTGTATTCTTGAAATAGTTTCCGCGCCACGGCCCTTCGAA
ATAAGTCGGATAGAAGAAAACCGATCGAAAATAGTAAGACCAGTGGCGAC
ATGGGAGTGAACCGCTACCCGTCAACATTCGAAATATGTGTCACCTTTGC
GCGTACACACGAGCGAGAGTGCGTTACGATCGCTGCCAATCTCACCCGTT
CTTCCTACCTCTCTCTACCTTGTTCCCGTGCACCCCTGGCCCAGTTTCGT
CGAAGGACAACCTGGGGACCAACTACCGTCGGGCAGCCAAGACGAAGACG
CCATCGAGTACCTTCTGGACGGAGTCTACCACATGAATCCGGAACGGGGA
ACGCAGAGGACCCGATCGAGTTGGAAGAGAGAGGTGGCGGTGAGGGAGAG
GGTTGGGAAGATGACTCTGGGGAATCGTCACCGACGGAGAGCGAGGACGG
CTGGAGGAGTGGAAAGCAGCGGTGATGACTCACCGGCGGGGGAGGGGGGG
ATGAAAAAGGAGCCAGAAGACGATACGCCGGGCAACGGGGATGATGTCCC
CTACGAAGAAATCGCACGAGAAGAGGCCGGTTTTCCGCAGAGGCCCAACA
AGTGGATGCACCAGTATCTCCTGACATTCTGTTCGTCATCGCCCGCTACG
GCAACGCCTACTTCCTCTGCTGCGGTAGTTGCCCCGTCGTCATGGGTGCA
ACACGGTCTGCAACACGGTCCGCCCTCCCGGGATTCACCGGGGCGCGGAA
GAGGGTTGGTGTTGGTGGGAGAGCGGCACGTCCCCTTGCTAGCGCGGCTG
GACACGTGAGAATTTAGAGAGAGTTTGTGTGTGTGCGTTTTTTTTGTGTA
CGGGCTATGGCAGCCATGCTTGTCATGCCCTCTCCCCCTCTGTCCCCTTG
TGCCCAAGTTTTTTTGTAAAGACGTTGTTTGCACCGTCCGGCATGCCTTC
TCTTTGGGTGTTTTTTTTCTTGTAGCGATTGTGTGTTTTTTTTGGCGTAC
GGGCCACGGCAGTAACGCTTGTCATGCCCCCCCCCTCCCCTTTGTTCCCA
CGTTTTTTGTAAAGACGTCGTTGCACCGTCCGACATGTCTTCTCTTTGGG
TATGTTCATTTGTCTTGTAGCGTTTGGTTTATTTTTGTGTACGGGCTGTG
GCAGCCATGCTTGTCATGCCCTCCCCCCCTCGGTCCCCTTGTGCCCAAGT
TTTATTGTAAAGACGTTGTTTGCACCGTCCGACATGCCTTCTCTTTGGGT
GTTTTTTTTCTTGTAAACGGTTGTGATTTTTTTTGGCGTACGGGCTACGG
CAGTAACGCTTGTCATGCCCCCCCCCCCTTCGTCCCCACGTTTTCCNCCC
CCCCCCCCCCCCCCCCCTTCGTCCCCACGTTTTCCTGTAAAGACTTTGTT
GCACCATCCGACAATGTCTTCTCTTTGGGTGTTGAGTTTTTTCTTGTCAA
CTGTTGTGTGTTTAATTTTGCGTATGGGCTTCGGCAGCCATGCTTGTCAT
GCCCTCTCCCCCTCGGTCCCCTTGTGCCCAAATTTTATCGTAAAGGCGTT
TTGTTTGCACCGTCCGATATGCCTTCTCTTTGGGTGTTTGTTTTTTTTCT
TGTAAACGGTTGTGATTTTTTTTGCTTGTGATCTGCGGCAGTAATGCTTG
TCATGCCCCCCCCCCTTCCCCACGTTGCTAGCAAAGACGTTATTGCACCC
TGTTCCCCCGACCCTGTTATGCCGGTTGTTTCGCCGTGCGTGTGTGTGAC
CAGCGTCGTCTGCACGGTCTTCGCGCTCATCAACGACATCTGGTAGATGC
TTGCAAAGCAGTTGCCCCTGCCGAGTATGGTCAGCCAGGCCAGTACCTGC
ACCAGCAAGTGCATCAAGGAATGTACACACGGGATATCGCGGTGTCAATT
AGTGATGTGATGTGGTTGCGTGTACCGTATGTCGTGTGGAAGCATCTAAC
GGGCGGGAGGACTGAGCATTGCGCCGTACGCTAGCCAACAGAACGACTGC
CAGTTTAGCTATGCGATGTCGCGCCGACTGCAGCGCTCTTCTCCTGCGTT
ATCTCGGACGCCAGTTCAACCCGATGTGACTTCACAACGGTGGTGCTGCA
GTTGTACATAGCAGCAGTTGAACCAAAAGTTTACATCATGCTGTACCTAC
AGACAACACCGACGAAACACTGTCCGGTGAACATATGCTGTTGTGCACGA
CAGCAGAGCGGCCGGGTGCACTTTTTTCGAGGGTTGGAGAGCACGGCCGG
TGGTCACCAACCGCGTCTCGTCAACGACATGCCCAGGAGACGGCATGCAG
CTGATACACAATACAACATGCGCCTGGTTCCTCCGCCTAATGCACTCTAC
ACAACAGCAGCAGCAGCAGTCCCCTCCTTGTTGGTTGTGGACAGAGCACC
TGAACTGCTGTACGTTTTGAGTAACGTGTTCGAGCCCGACTGAACACGGG
GCTATTTTGCCAGTTGTCATTTTTTTTTTTTTCTTAATATAACACAACGA
GTCCATCTCTATCATAGAGAAGAGTCAGAGACAGATTAACAATGGAATCA
TAGCGTCAGAGAAAACTACCTGTGTGTCTACGATTTCCCAGACAGCATAT
AGGGACATCTCCCCTGTGGGTAACAGGCTCAACAAATCAGTTTGGTAGCT
GTCTTGTGTGTCTCATATATGTTATGTTGGGAAGGTGCAGACGAGAGGTG
TTGGGTACTGTTGGTTAGTCGGGCGTTTTGTGTGTGGCACCCTGTTAGTT
GTAGGACATAACAGTCTCCATCAGTTTACATACGTATTTTTAGTTTGGTA
TGCATATGTGCGGAGTATGTGCGCCTGAT

protein sequence of EsuBft1027_3a-0001

>EsuBft1027_3 ID=EsuBft1027_3|Name=EsuBft1027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MYYADNSSVEQMLNRVNSCFWRQLAGVSPLPLQKSNITPPVGTAFEMGGP
RAYNMLRRE

mRNA from alignment at Scaffold_257:54710..59038+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1027_3a-0001 ID=EsuBft1027_3a-0001|Name=EsuBft1027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4329bp|location=Sequence derived from alignment at Scaffold_257:54710..59038+ (Ectocarpus subulatus male Bft15b)
ATGGAATTGCCGCACTACATTCAAATTTCGAACTGTCACGTGCCCCGATC
ACCATACATGTACTATGCGGACAACAGCAGTGTTGAACAAATGCTCAATC
GCGTTAACAGCTGCTTTTGGCGGCAACTCGCTGGCGTTTCCCCCCTCCCC
CTTCAAAAAAGCAACATAACACCACCGGTGGGAACAGCTTTTGAGATGGG
TGGCCCCAGGGCGTACAACATGTTGCGAAGAGAATAAAGTAGACCGCCCA
CCCCCCACCGTGTTTCCCCCCGATCACATAAACTACGAATGCAAGTTGTC
GCGGTGAGACACACAATAAACAACGATACACAGGAGCTGAGAGGTTCATG
GCCTCTTGGCACAAGGGCAAGGAGGAGGCCAGCCGACAACGAGCCATCAA
ACGAGGAGACAGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCAACG
GGGCGGTAGGGGGGCGGAAGGAAACGGCGCGGCGGGAAGAAAGCAAGCGA
GAAGAGACCGACCGCGTGACGTGACATGTTGCGGTCGAATTTCAACGACT
AATTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACTGTCTC
TAGGGATATCCCTGTCTCTGTGCGAGTTTGTTTGTGTCCTCGTCTTTGCT
TTATTCTGTTTTATTTTGTCTTTTGTTTTGTTTTTTACTGGCACGTACCC
CCGCCCCTTCCTTTGGCCGTCGACCTGCCTCCATGTAGTGGGAGGCTACC
CCCCCAGGCTGGTGGTGCGGCCGTTCCACTCGTCTAATTATTTATTTTAT
TTTATTTAAATTGTTTCTGATTCTATTTTGTTTTCTTGTATTTTATCGCT
CTGCTGACCCTTGGGGTCCATTTTATTTTGGTATACCTTTTCTAGGTACG
TTAGCCTGTGACCACGGAAATTGGCCGAGTCAAGTGATGGATTAGTACGG
AGAGATTGAGACAGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTT
AATGTGAAGACAACAACAACAACAACAACACTCATGCACCAAGTCAAAAC
TGTAGTCACAAACCCTTGTGCGTTTCGCAGTGTGTCGTTCTGCCCTCGGT
ACGGTGATCCCCTCCCTGGTCGACCTACTCTACAACGATGATGGAACTTA
TGTGCATGTGGCACACCGGTGCTGTGTCACTTTGGCCGATTGGCATGACT
TCCGGAACAATATTCTAAATCTCAGCGAAATAAACAGTGGTGTGTATTCT
TNAGACCGGGATGGTTTTTAATGTGAAGACAACAACAACAACAACAACAC
TCATGCACCAAGTCAAAACTGTAGTCACAAACCCTTGTGCGTTTCGCAGT
GTGTCGTTCTGCCCTCGGTACGGTGATCCCCTCCCTGGTCGACCTACTCT
ACAACGATGATGGAACTTATGTGCATGTGGCACACCGGTGCTGTGTCACT
TTGGCCGATTGGCATGACTTCCGGAACAATATTCTAAATCTCAGCGAAAT
AAACAGTGGTGTGTATTCTTGAAATAGTTTCCGCGCCACGGCCCTTCGAA
ATAAGTCGGATAGAAGAAAACCGATCGAAAATAGTAAGACCAGTGGCGAC
ATGGGAGTGAACCGCTACCCGTCAACATTCGAAATATGTGTCACCTTTGC
GCGTACACACGAGCGAGAGTGCGTTACGATCGCTGCCAATCTCACCCGTT
CTTCCTACCTCTCTCTACCTTGTTCCCGTGCACCCCTGGCCCAGTTTCGT
CGAAGGACAACCTGGGGACCAACTACCGTCGGGCAGCCAAGACGAAGACG
CCATCGAGTACCTTCTGGACGGAGTCTACCACATGAATCCGGAACGGGGA
ACGCAGAGGACCCGATCGAGTTGGAAGAGAGAGGTGGCGGTGAGGGAGAG
GGTTGGGAAGATGACTCTGGGGAATCGTCACCGACGGAGAGCGAGGACGG
CTGGAGGAGTGGAAAGCAGCGGTGATGACTCACCGGCGGGGGAGGGGGGG
ATGAAAAAGGAGCCAGAAGACGATACGCCGGGCAACGGGGATGATGTCCC
CTACGAAGAAATCGCACGAGAAGAGGCCGGTTTTCCGCAGAGGCCCAACA
AGTGGATGCACCAGTATCTCCTGACATTCTGTTCGTCATCGCCCGCTACG
GCAACGCCTACTTCCTCTGCTGCGGTAGTTGCCCCGTCGTCATGGGTGCA
ACACGGTCTGCAACACGGTCCGCCCTCCCGGGATTCACCGGGGCGCGGAA
GAGGGTTGGTGTTGGTGGGAGAGCGGCACGTCCCCTTGCTAGCGCGGCTG
GACACGTGAGAATTTAGAGAGAGTTTGTGTGTGTGCGTTTTTTTTGTGTA
CGGGCTATGGCAGCCATGCTTGTCATGCCCTCTCCCCCTCTGTCCCCTTG
TGCCCAAGTTTTTTTGTAAAGACGTTGTTTGCACCGTCCGGCATGCCTTC
TCTTTGGGTGTTTTTTTTCTTGTAGCGATTGTGTGTTTTTTTTGGCGTAC
GGGCCACGGCAGTAACGCTTGTCATGCCCCCCCCCTCCCCTTTGTTCCCA
CGTTTTTTGTAAAGACGTCGTTGCACCGTCCGACATGTCTTCTCTTTGGG
TATGTTCATTTGTCTTGTAGCGTTTGGTTTATTTTTGTGTACGGGCTGTG
GCAGCCATGCTTGTCATGCCCTCCCCCCCTCGGTCCCCTTGTGCCCAAGT
TTTATTGTAAAGACGTTGTTTGCACCGTCCGACATGCCTTCTCTTTGGGT
GTTTTTTTTCTTGTAAACGGTTGTGATTTTTTTTGGCGTACGGGCTACGG
CAGTAACGCTTGTCATGCCCCCCCCCCCTTCGTCCCCACGTTTTCCNCCC
CCCCCCCCCCCCCCCCCTTCGTCCCCACGTTTTCCTGTAAAGACTTTGTT
GCACCATCCGACAATGTCTTCTCTTTGGGTGTTGAGTTTTTTCTTGTCAA
CTGTTGTGTGTTTAATTTTGCGTATGGGCTTCGGCAGCCATGCTTGTCAT
GCCCTCTCCCCCTCGGTCCCCTTGTGCCCAAATTTTATCGTAAAGGCGTT
TTGTTTGCACCGTCCGATATGCCTTCTCTTTGGGTGTTTGTTTTTTTTCT
TGTAAACGGTTGTGATTTTTTTTGCTTGTGATCTGCGGCAGTAATGCTTG
TCATGCCCCCCCCCCTTCCCCACGTTGCTAGCAAAGACGTTATTGCACCC
TGTTCCCCCGACCCTGTTATGCCGGTTGTTTCGCCGTGCGTGTGTGTGAC
CAGCGTCGTCTGCACGGTCTTCGCGCTCATCAACGACATCTGGTAGATGC
TTGCAAAGCAGTTGCCCCTGCCGAGTATGGTCAGCCAGGCCAGTACCTGC
ACCAGCAAGTGCATCAAGGAATGTACACACGGGATATCGCGGTGTCAATT
AGTGATGTGATGTGGTTGCGTGTACCGTATGTCGTGTGGAAGCATCTAAC
GGGCGGGAGGACTGAGCATTGCGCCGTACGCTAGCCAACAGAACGACTGC
CAGTTTAGCTATGCGATGTCGCGCCGACTGCAGCGCTCTTCTCCTGCGTT
ATCTCGGACGCCAGTTCAACCCGATGTGACTTCACAACGGTGGTGCTGCA
GTTGTACATAGCAGCAGTTGAACCAAAAGTTTACATCATGCTGTACCTAC
AGACAACACCGACGAAACACTGTCCGGTGAACATATGCTGTTGTGCACGA
CAGCAGAGCGGCCGGGTGCACTTTTTTCGAGGGTTGGAGAGCACGGCCGG
TGGTCACCAACCGCGTCTCGTCAACGACATGCCCAGGAGACGGCATGCAG
CTGATACACAATACAACATGCGCCTGGTTCCTCCGCCTAATGCACTCTAC
ACAACAGCAGCAGCAGCAGTCCCCTCCTTGTTGGTTGTGGACAGAGCACC
TGAACTGCTGTACGTTTTGAGTAACGTGTTCGAGCCCGACTGAACACGGG
GCTATTTTGCCAGTTGTCATTTTTTTTTTTTTCTTAATATAACACAACGA
GTCCATCTCTATCATAGAGAAGAGTCAGAGACAGATTAACAATGGAATCA
TAGCGTCAGAGAAAACTACCTGTGTGTCTACGATTTCCCAGACAGCATAT
AGGGACATCTCCCCTGTGGGTAACAGGCTCAACAAATCAGTTTGGTAGCT
GTCTTGTGTGTCTCATATATGTTATGTTGGGAAGGTGCAGACGAGAGGTG
TTGGGTACTGTTGGTTAGTCGGGCGTTTTGTGTGTGGCACCCTGTTAGTT
GTAGGACATAACAGTCTCCATCAGTTTACATACGTATTTTTAGTTTGGTA
TGCATATGTGCGGAGTATGTGCGCCTGAT

Coding sequence (CDS) from alignment at Scaffold_257:54710..59038+

>EsuBft1027_3a-0001 ID=EsuBft1027_3a-0001|Name=EsuBft1027_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_257:54710..59038+ (Ectocarpus subulatus male Bft15b)
ATGTACTATGCGGACAACAGCAGTGTTGAACAAATGCTCAATCGCGTTAA
CAGCTGCTTTTGGCGGCAACTCGCTGGCGTTTCCCCCCTCCCCCTTCAAA
AAAGCAACATAACACCACCGGTGGGAACAGCTTTTGAGATGGGTGGCCCC
AGGGCGTACAACATGTTGCGAAGAGAATAA