EsuBft1027_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1027_2a-0001
Unique NameEsuBft1027_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_257contigScaffold_257:63543..64034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1027_2
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length40
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_2aEsuBft1027_2aEctocarpus subulatus male Bft15bgeneScaffold_257 63543..64034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_2a-0001-exonagat-exon-93312Ectocarpus subulatus male Bft15bexonScaffold_257 63543..63770 -
EsuBft1027_2a-0001-exonEsuBft1027_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_257 63861..64034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_2a-0001-cdsEsuBft1027_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_257 63543..63770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_2a-0001EsuBft1027_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_257 63543..64034 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1027_2a-0001 ID=EsuBft1027_2a-0001|Name=EsuBft1027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=402bp|location=Sequence derived from alignment at Scaffold_257:63543..64034- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAACTGGCTGCCATCGCTGGCACTCCTCGCTGGCGGGGGGGGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGGCTATCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTCTTGCT
GTGACCTTGGCCGCCCTTGATAAGCGAAAGAGGAAAGACGTGGAAAAATG
CGCTTGGGCACAGATGTTGGAGGATAAGGACCTCGACGACAGCAACAGCA
TAACCTCCAAGCAGTTTCGCCTTGACTTCCGCGTGCCCTACAGCTTCTTT
CTGCGGCTCGGGGCGTTGGTGAAGAGCAAGGACTGGTTCACCACTTCTGG
CTGCGATGCAGCAGGTCGGCAAAGCCACCCAGTGGAGCACAAGGTAGGCT
GA
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protein sequence of EsuBft1027_2a-0001

>EsuBft1027_2 ID=EsuBft1027_2|Name=EsuBft1027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=133bp
MWNWLPSLALLAGGGGATRLTPPYISSLGYLPMAETGVGDALLPATALLA
VTLAALDKRKRKDVEKCAWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFF
LRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVG
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mRNA from alignment at Scaffold_257:63543..64034-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1027_2a-0001 ID=EsuBft1027_2a-0001|Name=EsuBft1027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=492bp|location=Sequence derived from alignment at Scaffold_257:63543..64034- (Ectocarpus subulatus male Bft15b)
ATGTGGAACTGGCTGCCATCGCTGGCACTCCTCGCTGGCGGGGGGGGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGGCTATCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTCTTGCT
GTGACCTTGGCCGCCCTTGATAAGGTCCAACGCAACGACTTGTCGCAAAA
AGACCTCTAAGAGGAGGAGGATCGTGCGCCCGACCTTCCCCGCCCGTAAC
TCTTCAGAGGACAGCGAAAGAGGAAAGACGTGGAAAAATGCGCTTGGGCA
CAGATGTTGGAGGATAAGGACCTCGACGACAGCAACAGCATAACCTCCAA
GCAGTTTCGCCTTGACTTCCGCGTGCCCTACAGCTTCTTTCTGCGGCTCG
GGGCGTTGGTGAAGAGCAAGGACTGGTTCACCACTTCTGGCTGCGATGCA
GCAGGTCGGCAAAGCCACCCAGTGGAGCACAAGGTAGGCTGA
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Coding sequence (CDS) from alignment at Scaffold_257:63543..64034-

>EsuBft1027_2a-0001 ID=EsuBft1027_2a-0001|Name=EsuBft1027_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=402bp|location=Sequence derived from alignment at Scaffold_257:63543..64034- (Ectocarpus subulatus male Bft15b)
ATGTGGAACTGGCTGCCATCGCTGGCACTCCTCGCTGGCGGGGGGGGTGC
CACTCGCTTGACTCCACCCTACATCAGCAGCCTGGGCTATCTTCCGATGG
CCGAAACCGGTGTGGGTGATGCCCTGCTACCAGCAACCGCTCTTCTTGCT
GTGACCTTGGCCGCCCTTGATAAGCGAAAGAGGAAAGACGTGGAAAAATG
CGCTTGGGCACAGATGTTGGAGGATAAGGACCTCGACGACAGCAACAGCA
TAACCTCCAAGCAGTTTCGCCTTGACTTCCGCGTGCCCTACAGCTTCTTT
CTGCGGCTCGGGGCGTTGGTGAAGAGCAAGGACTGGTTCACCACTTCTGG
CTGCGATGCAGCAGGTCGGCAAAGCCACCCAGTGGAGCACAAGGTAGGCT
GA
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