EsuBft1027_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1027_11a-0001
Unique NameEsuBft1027_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_257contigScaffold_257:1479..2602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1027_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length89
Hectar predicted targeting categoryother localisation
Evalue5.34e-139
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_11aEsuBft1027_11aEctocarpus subulatus male Bft15bgeneScaffold_257 1479..2602 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_11a-0001-exonagat-exon-93329Ectocarpus subulatus male Bft15bexonScaffold_257 1479..1625 +
EsuBft1027_11a-0001-exonagat-exon-93330Ectocarpus subulatus male Bft15bexonScaffold_257 1681..2053 +
EsuBft1027_11a-0001-exonEsuBft1027_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_257 2229..2602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_11a-0001-cdsEsuBft1027_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_257 1479..1625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1027_11a-0001EsuBft1027_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_257 1479..2602 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1027_11a-0001 ID=EsuBft1027_11a-0001|Name=EsuBft1027_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=894bp|location=Sequence derived from alignment at Scaffold_257:1479..2602+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGGGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTTATCATGGA
CAACTTGCACGCGCAGACCACAGACGAGTTCAAGGAGTATCTTGCGAAGC
ACTGCAATACTCTCGCCTGGTATGGCCCTTCGGAGTACACGAACGAGATG
GACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTC
GCTGACGGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGAGCGG
CCATGGCAAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTTTCGAA
AAGTGCGGGATGGCCATGACCGTGGATGGCTCGGGCGATGATCGAATCAC
CTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGACAGTA
GCGACGACGAACAAGGTCCGGAGAACGGCAACGATGCGCCTGAGGGGCGG
GCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTTGACTC
CAGCGATGAAGACGACGGCGACATCTCTCAACCCCAGACCGACGAGCTAG
CTCTTCTGGACGGCGATGACGACAGCATGGACCAACAAGACCCGGTGGAT
GAGATACAGGGAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTAA
ATCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGGC
TGGGCATGGGGTGGTTTGGAGGGCTGATCGCTCAACAATCTCAGAAGGAG
ACTCGCCACCTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTAC
GCGCAAGATGAAGTTGCCCTTAGACAAGTACAGCGGAGATTCGGATGCGG
CTGTAGGCTCCTGTTTTTTTTTTTTCTTATCACACAACAAATAA
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protein sequence of EsuBft1027_11a-0001

>EsuBft1027_11 ID=EsuBft1027_11|Name=EsuBft1027_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=297bp
MRGRGELPKARSILIMDNLHAQTTDEFKEYLAKHCNTLAWYGPSEYTNEM
DIWLEQSDNLERWETASLTASDRRVLITQWMGAAMARLNSQQAYRYRLFE
KCGMAMTVDGSGDDRITLEGLDKPYTFANDEDSSDDEQGPENGNDAPEGR
AEEGDGGRETLMEGVDSSDEDDGDISQPQTDELALLDGDDDSMDQQDPVD
EIQGMEIPAGFRIQEAKSVALDRLLLRRGVLVRLGMGWFGGLIAQQSQKE
TRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSCFFFFLSHNK
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mRNA from alignment at Scaffold_257:1479..2602+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1027_11a-0001 ID=EsuBft1027_11a-0001|Name=EsuBft1027_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1124bp|location=Sequence derived from alignment at Scaffold_257:1479..2602+ (Ectocarpus subulatus male Bft15b)
ATGCGCGGGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTTATCATGGA
CAACTTGCACGCGCAGACCACAGACGAGTTCAAGGAGTATCTTGCGAAGC
ACTGCAATACTCTCGCCTGGTATGGCCCTTCGGAGTACACGAACGAGGTG
CAGCCAGTTGATGCAGGAGCCGGACGATTTCAAGGTGCAAGTCGGGAGGC
AGATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACC
GCGTCGCTGACGGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGG
AGCGGCCATGGCAAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTT
TCGAAAAGTGCGGGATGGCCATGACCGTGGATGGCTCGGGCGATGATCGA
ATCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGA
CAGTAGCGACGACGAACAAGGTCCGGAGAACGGCAACGATGCGCCTGAGG
GGCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTT
GACTCCAGCGATGAAGACGACGGCGGTAAGTTTGTTTTGCACAGAACCAA
CTCTTAGTCTTCTTTTTGTTGATGACGATGTCCTTCATGTTGACGTTAGC
TTGTTTCCGCGCACGGCTACACTCAAATTATGATAAGTTCAGGTTGAGTT
TGACGACGTGACACCCTAACTTCTTGTGTTTCCCGCTGCCTCGTTCGCAG
ACATCTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACGGCGATGAC
GACAGCATGGACCAACAAGACCCGGTGGATGAGATACAGGGAATGGAGAT
CCCGGCAGGCTTTCGTATTCAAGAAGCTAAATCCGTTGCTCTTGACAGAT
TGCTTTTGCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGA
GGGCTGATCGCTCAACAATCTCAGAAGGAGACTCGCCACCTGTACGACTA
CTGTGTGCAGCTGGAGCTAGACCAGAGTACGCGCAAGATGAAGTTGCCCT
TAGACAAGTACAGCGGAGATTCGGATGCGGCTGTAGGCTCCTGTTTTTTT
TTTTTCTTATCACACAACAAATAA
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Coding sequence (CDS) from alignment at Scaffold_257:1479..2602+

>EsuBft1027_11a-0001 ID=EsuBft1027_11a-0001|Name=EsuBft1027_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=894bp|location=Sequence derived from alignment at Scaffold_257:1479..2602+ (Ectocarpus subulatus male Bft15b)
ATGCGCGGGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTTATCATGGA
CAACTTGCACGCGCAGACCACAGACGAGTTCAAGGAGTATCTTGCGAAGC
ACTGCAATACTCTCGCCTGGTATGGCCCTTCGGAGTACACGAACGAGATG
GACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTC
GCTGACGGCTTCTGATCGGCGCGTCCTGATCACTCAGTGGATGGGAGCGG
CCATGGCAAGACTCAACAGCCAACAGGCGTACCGATACCGTCTTTTCGAA
AAGTGCGGGATGGCCATGACCGTGGATGGCTCGGGCGATGATCGAATCAC
CTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGACAGTA
GCGACGACGAACAAGGTCCGGAGAACGGCAACGATGCGCCTGAGGGGCGG
GCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGAGGGCGTTGACTC
CAGCGATGAAGACGACGGCGACATCTCTCAACCCCAGACCGACGAGCTAG
CTCTTCTGGACGGCGATGACGACAGCATGGACCAACAAGACCCGGTGGAT
GAGATACAGGGAATGGAGATCCCGGCAGGCTTTCGTATTCAAGAAGCTAA
ATCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTTAGGC
TGGGCATGGGGTGGTTTGGAGGGCTGATCGCTCAACAATCTCAGAAGGAG
ACTCGCCACCTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGAGTAC
GCGCAAGATGAAGTTGCCCTTAGACAAGTACAGCGGAGATTCGGATGCGG
CTGTAGGCTCCTGTTTTTTTTTTTTCTTATCACACAACAAATAA
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