EsuBft1026_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1026_9a-0001
Unique NameEsuBft1026_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:259265..263010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog400682.PAC_15698666
ProteomeIdEsuBft1026_9
Protein domainsSSF56672
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Notetransposon ty3-g gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-g pe:1 sv:3 [Automatic annotation]
Nb exon5
Max annot lvl33208|Metazoa
Length2199
Hectar predicted targeting categoryother localisation
Evalue2.13e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa
Date last modified2016-06-14
Date creation2016-06-14
DescriptionK02A2.6-like
COG categoryOU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_9aEsuBft1026_9aEctocarpus subulatus male Bft15bgeneScaffold_385 259265..263010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_9a-0001EsuBft1026_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 259265..263010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_9a-0001-exonEsuBft1026_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 259265..259739 -
EsuBft1026_9a-0001-exonagat-exon-96565Ectocarpus subulatus male Bft15bexonScaffold_385 260039..260334 -
EsuBft1026_9a-0001-exonagat-exon-96564Ectocarpus subulatus male Bft15bexonScaffold_385 260687..261067 -
EsuBft1026_9a-0001-exonagat-exon-96563Ectocarpus subulatus male Bft15bexonScaffold_385 261544..261783 -
EsuBft1026_9a-0001-exonagat-exon-96566Ectocarpus subulatus male Bft15bexonScaffold_385 262204..263010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_9a-0001-cdsEsuBft1026_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 259265..259739 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1026_9a-0001 ID=EsuBft1026_9a-0001|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2199bp|location=Sequence derived from alignment at Scaffold_385:259265..263010- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCTGACTCCCAAGGCCCTTCTCCAACTCATGAACCAGGCCGTGTC
GCTATGCTCCCCACAGCGCATGGAACAGGGCACGTCACGCGCCCACCTGG
TGGGAGTCATGCGGCAGAGTCGGAACCTGCTCCAGCAGCACCCGATAGAC
TCCCACGCGCCCGGCTCCCAGCAGATGCGCCTGCGCGGGGAACTGTGTCA
GGACTGCTTCCGCAATTTCGTCACGACCTTGGACCAGAACGCGCCCTTCT
TCGACCAAGGCGGCAGCCCCCCCCAAGGCACCGTCGTGTCGGTGTTGCAG
TTGTCGTCGCGGCGGTTGGCGCCGGGACAGGACACCTTCACGCGCCAAGC
CAAACGGCGGAGCTCCTCCATGGCGCTGCTGGACGACGGCGCCGTTCACC
TGCCCCTGCAGGATTGCCGCGACTCCGCTACGGACCCGGATACGGAGGAC
ACGGACGCCCAGGTTGGGGAGTTTGACGGCCCCCGATACCGGCCTCGGGC
GGCAACTGCGGCCCTCTGCGCACCGCACGACAATCGCCCGCGCGCCGACC
GCAACACGTTGGCACCACCCGACTTGCGGAAGCGAGGGTGTGCGCCCCAA
GCCGGCGTCCCGGATGACGACGCGAGCGATTCACGGCGCCCGCGGACGCC
CGACGGCCCGCTGCCACCCGCTGCCTGGGGACCGCCTGCCGACCGCGGAC
ACTCCACCAGCGACCGGCGGTTGCCACCGGATGCACCGGCACCCGACGCC
GACCAGAAGACGATCCAAGAGTTCATTACGACCATGCCAAGAGTCTGCGT
TAACCACGGCTGCCGCACCACCGTCTTGCTCGACACCGGGGCACCGGGGG
GGGTCGTACGCCCCGGTGGCGCTAGTCCAGGCGGCGGAGCGCACCGAGAA
TGGGACCGACGCATCGTCGCCAGGCGAGGGCGAGGCCTCCTTCGCGCTGT
CATCCCCAGTGACAGCGGCGTTGCATCAACGTCGATCATCGGCACGGCCA
TACTGCCGCTGGTCTTTCCGCCGGTGGACCTCGTCTTCCGCGCGTGCGGG
ATGGAGGACGGAAGCTCGCTGCGGTGGCCGATGGTCCTGGCCCACAAACA
GGACTTCGCGGGGAGGGTCAGCGCCGAGGTGGAGGCGCTGCTGCCAGGAC
CCCAGTCACACGCGGCCCAACTGCTGGTAGTCTTCCCTTTCGGACCTTTC
GACTTGGAGAGCGACGCTGAGATCGGCGTCGCCAAGGGGGTTCAATGGTG
GACCCCAGGCACCGCGTCGAAGATCAAGCTCGTGAACCGCGCCACGGGCC
CCAAGACCGTCGGACAAGGTGTGCAGGTAGCCACGGCGTACGGCACCAAC
TGCGACGACCTGAAGCGGACGTTTCTCCTCAAGGAACCCGCGCCAACGCT
GCTCATGCTTGCCCCGCCGCCCGCGACGCACCGCGTTGCCGTCGACTACC
GCCCCCTCAATGATGTCACTAAGGATGATGACGGGGGGCTCGGCGCTTTG
GCGACGATGCACCGCCGCACTAATGGTAGCAATTTCTTCATGCTACTCGA
TTTGCCCTCGGCTTACCACCAGCTCTCCATCAAGGAAGCCGACTGCTACA
AGATGGCCTTCATATACGCTCGGGGGCCGCTGTACGGGTTCACGCGTTGC
GGCTTCGGCCTCACGATGATCCCCGCCGTCTTCTCGGCCCACCTGGGCGA
CGCCCGTCGCCCGGTCGAAGCTCGAGGCGGCATCACCGCCTGGTGGCATA
CCTCTGCTCGAAAATTCGCGGTCGCGTCGAAGGGTGGCGGGTCGGTATCC
TCCCGTGGCGTCGGAGGCGTCAACGTCCGGAGCGGCACACCGTCGAGCAC
TGGTCCCGCCGGGCCCTGGTTGCCCACCGGGCGGGAGGTGTCGTCAGGGA
AGGATGCGTCGACTTGCGGTTCTGGTGTTCCAAGGAGGGCCGCGTCGAAC
GCTGGCTGGACAACATCCTGTTGCACCGTGGACGAGCACGTTGCACTCAT
CGAGGAGATTTTCGACCTTCTCCACGAGGCGGGGTACTCGGTGCACTTCA
AGAAGTGCATGCTCGGCTTGTCGGAGGGGGAACTCCTGGGAGCCATGGTC
GGCAGATCGGGCGTGCGGCCGACGCCATCCAAGATCAAGGCCGTGGAGGA
AATGGAGATACCGGCGACGGACGGGGAGGTGCGGTCGCTCCTAGGCTGA
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protein sequence of EsuBft1026_9a-0001

>EsuBft1026_9 ID=EsuBft1026_9|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=732bp
MVLTPKALLQLMNQAVSLCSPQRMEQGTSRAHLVGVMRQSRNLLQQHPID
SHAPGSQQMRLRGELCQDCFRNFVTTLDQNAPFFDQGGSPPQGTVVSVLQ
LSSRRLAPGQDTFTRQAKRRSSSMALLDDGAVHLPLQDCRDSATDPDTED
TDAQVGEFDGPRYRPRAATAALCAPHDNRPRADRNTLAPPDLRKRGCAPQ
AGVPDDDASDSRRPRTPDGPLPPAAWGPPADRGHSTSDRRLPPDAPAPDA
DQKTIQEFITTMPRVCVNHGCRTTVLLDTGAPGGVVRPGGASPGGGAHRE
WDRRIVARRGRGLLRAVIPSDSGVASTSIIGTAILPLVFPPVDLVFRACG
MEDGSSLRWPMVLAHKQDFAGRVSAEVEALLPGPQSHAAQLLVVFPFGPF
DLESDAEIGVAKGVQWWTPGTASKIKLVNRATGPKTVGQGVQVATAYGTN
CDDLKRTFLLKEPAPTLLMLAPPPATHRVAVDYRPLNDVTKDDDGGLGAL
ATMHRRTNGSNFFMLLDLPSAYHQLSIKEADCYKMAFIYARGPLYGFTRC
GFGLTMIPAVFSAHLGDARRPVEARGGITAWWHTSARKFAVASKGGGSVS
SRGVGGVNVRSGTPSSTGPAGPWLPTGREVSSGKDASTCGSGVPRRAASN
AGWTTSCCTVDEHVALIEEIFDLLHEAGYSVHFKKCMLGLSEGELLGAMV
GRSGVRPTPSKIKAVEEMEIPATDGEVRSLLG
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mRNA from alignment at Scaffold_385:259265..263010-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1026_9a-0001 ID=EsuBft1026_9a-0001|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3746bp|location=Sequence derived from alignment at Scaffold_385:259265..263010- (Ectocarpus subulatus male Bft15b)
ATGGTCCTGACTCCCAAGGCCCTTCTCCAACTCATGAACCAGGCCGTGTC GCTATGCTCCCCACAGCGCATGGAACAGGGCACGTCACGCGCCCACCTGG TGGGAGTCATGCGGCAGAGTCGGAACCTGCTCCAGCAGCACCCGATAGAC TCCCACGCGCCCGGCTCCCAGCAGATGCGCCTGCGCGGGGAACTGTGTCA GGACTGCTTCCGCAATTTCGTCACGACCTTGGACCAGAACGCGCCCTTCT TCGACCAAGGCGGCAGCCCCCCCCAAGGCACCGTCGTGTCGGTGTTGCAG TTGTCGTCGCGGCGGTTGGCGCCGGGACAGGACACCTTCACGCGCCAAGC CAAACGGCGGAGCTCCTCCATGGCGCTGCTGGACGACGGCGCCGTTCACC TGCCCCTGCAGGATTGCCGCGACTCCGCTACGGACCCGGATACGGAGGAC ACGGACGCCCAGGTTGGGGAGTTTGACGGCCCCCGATACCGGCCTCGGGC GGCAACTGCGGCCCTCTGCGCACCGCACGACAATCGCCCGCGCGCCGACC GCAACACGTTGGCACCACCCGACTTGCGGAAGCGAGGGTGTGCGCCCCAA GCCGGCGTCCCGGATGACGACGCGAGCGATTCACGGCGCCCGCGGACGCC CGACGGCCCGCTGCCACCCGCTGCCTGGGGACCGCCTGCCGACCGCGGAC ACTCCACCAGCGACCGGCGGTTGCCACCGGATGCACCGGCACCCGACGCC GACCAGAAGACGATCCAAGAGTTCATTACGACCATGCCAAGAGTCTGCGT TAACCACGTCCGGTGACTCCCGTTCAAGCGTATGGTGCAAGACCACTACT GTCGGTACCAACGCACTGACGACCCCCTTCCCCTTCAGGGCCTGACCCGC GCCCACCGTCTTCCCGGCCCCGCACCGCCGTGGAGGACTTCGACGGCAAC CTCCTGTACGCGGAAGAAGGCTGCCCTGGGTGGGTTGCTCTGAACGCCGC GGCAACCGAGGGGGCGCCGGAGGCCCACTCCTGAGGTTTGTGCCCTGGAG AACACCCCTTCGAAGGACTCTCCGGAGAACACACCTACACATCGCGGGCG GGAACCTGTGAAGGATGCTGCTTGCGTGGCCGTCTCTGCAGCCGCTCCCG CCTCTGTTGCGCTGCTGTCTAAGGGCTCCAACAAACCTGGGTAACGGCGT ACTTCTAGAACGCTGCTCCGGGTGTAGGGCTGCCGCACCACCGTCTTGCT CGACACCGGGGCACCGGGGGGGGTCGTACGCCCCGGTGGCGCTAGTCCAG GCGGCGGAGCGCACCGAGAATGGGACCGACGCATCGTCGCCAGGCGAGGG CGAGGCCTCCTTCGCGCTGTCATCCCCAGTGACAGCGGCGTTGCATCAAC GTCGATCATCGGCACGGCCATACTGCCGCTGGTCTTTCCGCCGGTGGACC TCGTCTTCCGCGCGTGCGTTCGTGTCGTTGAGGGACTGCCGTTAGGTCTG ATCCTGGGTGCGGCCTTCATGCGACACTAGGGCAGCATAATCGGCTTTGA CCGAGCGGGCGTGTTCAAGCCCACGAGGGGCTCCCACGGCGCACTCTTCC TGCCCCCGGAAGCCGACGACGAACCCACGACCGTGGCGGGGTCGCCTGCA CGCGCTACAACCAGCGTAGTGTTCCGCTCTTGTGCGCCGGCAAGTTTGGC GTTCGCTCCGGTCGGACCCGATGTGAACGGACCGGGGTCGTCCTCGCGGC GGCCCGCCCTCCTGCTACAGATGGCGCGGCGGCCCGCCCCCCTACTACAG ATGGCGCCGGGCCCACCCACGAGGGGCTTCTGCGCCGTGGAATGGTGCGC TGAGGAGAGAGGGGAGAAAGGTGACGAGAGGTTGGCTACCTCTGCTACCC CAGCTAGCGGTCGCTGAGGAAATTGATCTTAGCTCGACTGCAGGGGATGG AGGACGGAAGCTCGCTGCGGTGGCCGATGGTCCTGGCCCACAAACAGGAC TTCGCGGGGAGGGTCAGCGCCGAGGTGGAGGCGCTGCTGCCAGGACCCCA GTCACACGCGGCCCAACTGCTGGTAGTCTTCCCTTTCGGACCTTTCGACT TGGAGAGCGACGCTGAGATCGGCGTCGCCAAGGGGGTTCAATGGTGGACC CCAGGCACCGCGTCGAAGATCAAGCTCGTGAACCGCGCCACGGGCCCCAA GACCGTCGGACAAGGTGTGCAGGTAGCCACGGCGTACGGCACCAACTGCG ACGACCTGAAGCGGACGTTTCTCCTCAAGGAACCCGCGCCAACGCTGCTC ATGCTTGCCCCGCCGCCCGCGACGGTATACACGCCGCTAGCCAGTCGACG AGCCGGACATGCGCGTGAGCGACGCCAACACCGGGCAGCTCGGCCACCAG AGCCGCCTCTAGCTATTGGCCTTTATTACTCGTGCCGAGGCAATGGGCTG TTCCCCGTCAACCCCAAGATCGTCGCGGCCCTCCCTGCCGATGAGGTGCC GATCCCGTTGGAGCACAAGAGCGTTTCGCCCATTGCGTGCAGACAGCAGC AGTACAACCCCGTCCAAGCCCAGATCGTCAACAAACCAACCGACTTCTGG GTGGAAGCGGACGTCATCCGCTACTCACATTCTCATGATGCAGCCGGACA TCCATCGTCAAGAAGAAAGACGATAGCACCGCGTTGCCGTCGACTACCGC CCCCTCAATGATGTCACTAAGGATGATGACGGGGGGCTCGGCGCTTTGGC GACGATGCACCGCCGCACTAATGGTAGCAATTTCTTCATGCTACTCGATT TGCCCTCGGCTTACCACCAGCTCTCCATCAAGGAAGCCGACTGCTACAAG ATGGCCTTCATATACGCTCGGGGGCCGCTGTACGGGTTCACGCGTTGCGG CTTCGGCCTCACGATGATCCCCGCCGTCTTCTCGGCCCACCTGGGCGACG CCCGTCGCCCGGTCGAAGCTCGGTCAGTACCTGCGTGCAGCGGCGGCCAA CAAGCAGAGTTCGGGCGAGGCATCTATTTTTACTCCAGCTGTTTATGCTC TCGCACACTCCAGCGTGGTCCAGTCCAGCTCGATGGCGCCGTCGATTCGT AGCAGGCGTTCAAGCGCCAGCGGCGCTCTGCCGGCACCGCAGCCCAATAC AACAGCCCGGGGGCAGCCGGGGGGCCAGGGCGGTCCGAACGTAATCGTAG CTCTTGAGGCGGTGGCAGGCGTCACTTTCCAGGAGCTCCGGTGTTAGCTG GGGGGCATAGAAGACGGGTAGAGGCGGCATCACCGCCTGGTGGCATACCT CTGCTCGAAAATTCGCGGTCGCGTCGAAGGGTGGCGGGTCGGTATCCTCC CGTGGCGTCGGAGGCGTCAACGTCCGGAGCGGCACACCGTCGAGCACTGG TCCCGCCGGGCCCTGGTTGCCCACCGGGCGGGAGGTGTCGTCAGGGAAGG ATGCGTCGACTTGCGGTTCTGGTGTTCCAAGGAGGGCCGCGTCGAACGCT GGCTGGACAACATCCTGTTGCACCGTGGACGAGCACGTTGCACTCATCGA GGAGATTTTCGACCTTCTCCACGAGGCGGGGTACTCGGTGCACTTCAAGA AGTGCATGCTCGGCTTGTCGGAGGGGGAACTCCTGGGAGCCATGGTCGGC AGATCGGGCGTGCGGCCGACGCCATCCAAGATCAAGGCCGTGGAGGAAAT GGAGATACCGGCGACGGACGGGGAGGTGCGGTCGCTCCTAGGCTGA
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Coding sequence (CDS) from alignment at Scaffold_385:259265..263010-

>EsuBft1026_9a-0001 ID=EsuBft1026_9a-0001|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2199bp|location=Sequence derived from alignment at Scaffold_385:259265..263010- (Ectocarpus subulatus male Bft15b)
ATGGTCCTGACTCCCAAGGCCCTTCTCCAACTCATGAACCAGGCCGTGTC
GCTATGCTCCCCACAGCGCATGGAACAGGGCACGTCACGCGCCCACCTGG
TGGGAGTCATGCGGCAGAGTCGGAACCTGCTCCAGCAGCACCCGATAGAC
TCCCACGCGCCCGGCTCCCAGCAGATGCGCCTGCGCGGGGAACTGTGTCA
GGACTGCTTCCGCAATTTCGTCACGACCTTGGACCAGAACGCGCCCTTCT
TCGACCAAGGCGGCAGCCCCCCCCAAGGCACCGTCGTGTCGGTGTTGCAG
TTGTCGTCGCGGCGGTTGGCGCCGGGACAGGACACCTTCACGCGCCAAGC
CAAACGGCGGAGCTCCTCCATGGCGCTGCTGGACGACGGCGCCGTTCACC
TGCCCCTGCAGGATTGCCGCGACTCCGCTACGGACCCGGATACGGAGGAC
ACGGACGCCCAGGTTGGGGAGTTTGACGGCCCCCGATACCGGCCTCGGGC
GGCAACTGCGGCCCTCTGCGCACCGCACGACAATCGCCCGCGCGCCGACC
GCAACACGTTGGCACCACCCGACTTGCGGAAGCGAGGGTGTGCGCCCCAA
GCCGGCGTCCCGGATGACGACGCGAGCGATTCACGGCGCCCGCGGACGCC
CGACGGCCCGCTGCCACCCGCTGCCTGGGGACCGCCTGCCGACCGCGGAC
ACTCCACCAGCGACCGGCGGTTGCCACCGGATGCACCGGCACCCGACGCC
GACCAGAAGACGATCCAAGAGTTCATTACGACCATGCCAAGAGTCTGCGT
TAACCACGGCTGCCGCACCACCGTCTTGCTCGACACCGGGGCACCGGGGG
GGGTCGTACGCCCCGGTGGCGCTAGTCCAGGCGGCGGAGCGCACCGAGAA
TGGGACCGACGCATCGTCGCCAGGCGAGGGCGAGGCCTCCTTCGCGCTGT
CATCCCCAGTGACAGCGGCGTTGCATCAACGTCGATCATCGGCACGGCCA
TACTGCCGCTGGTCTTTCCGCCGGTGGACCTCGTCTTCCGCGCGTGCGGG
ATGGAGGACGGAAGCTCGCTGCGGTGGCCGATGGTCCTGGCCCACAAACA
GGACTTCGCGGGGAGGGTCAGCGCCGAGGTGGAGGCGCTGCTGCCAGGAC
CCCAGTCACACGCGGCCCAACTGCTGGTAGTCTTCCCTTTCGGACCTTTC
GACTTGGAGAGCGACGCTGAGATCGGCGTCGCCAAGGGGGTTCAATGGTG
GACCCCAGGCACCGCGTCGAAGATCAAGCTCGTGAACCGCGCCACGGGCC
CCAAGACCGTCGGACAAGGTGTGCAGGTAGCCACGGCGTACGGCACCAAC
TGCGACGACCTGAAGCGGACGTTTCTCCTCAAGGAACCCGCGCCAACGCT
GCTCATGCTTGCCCCGCCGCCCGCGACGCACCGCGTTGCCGTCGACTACC
GCCCCCTCAATGATGTCACTAAGGATGATGACGGGGGGCTCGGCGCTTTG
GCGACGATGCACCGCCGCACTAATGGTAGCAATTTCTTCATGCTACTCGA
TTTGCCCTCGGCTTACCACCAGCTCTCCATCAAGGAAGCCGACTGCTACA
AGATGGCCTTCATATACGCTCGGGGGCCGCTGTACGGGTTCACGCGTTGC
GGCTTCGGCCTCACGATGATCCCCGCCGTCTTCTCGGCCCACCTGGGCGA
CGCCCGTCGCCCGGTCGAAGCTCGAGGCGGCATCACCGCCTGGTGGCATA
CCTCTGCTCGAAAATTCGCGGTCGCGTCGAAGGGTGGCGGGTCGGTATCC
TCCCGTGGCGTCGGAGGCGTCAACGTCCGGAGCGGCACACCGTCGAGCAC
TGGTCCCGCCGGGCCCTGGTTGCCCACCGGGCGGGAGGTGTCGTCAGGGA
AGGATGCGTCGACTTGCGGTTCTGGTGTTCCAAGGAGGGCCGCGTCGAAC
GCTGGCTGGACAACATCCTGTTGCACCGTGGACGAGCACGTTGCACTCAT
CGAGGAGATTTTCGACCTTCTCCACGAGGCGGGGTACTCGGTGCACTTCA
AGAAGTGCATGCTCGGCTTGTCGGAGGGGGAACTCCTGGGAGCCATGGTC
GGCAGATCGGGCGTGCGGCCGACGCCATCCAAGATCAAGGCCGTGGAGGA
AATGGAGATACCGGCGACGGACGGGGAGGTGCGGTCGCTCCTAGGCTGA
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