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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 400682.PAC_15698666 |
ProteomeId | EsuBft1026_9 |
Protein domains | SSF56672 |
Protein domains | G3DSA |
Owner | apollo_admin@sb-roscoff.fr |
Note | transposon ty3-g gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-g pe:1 sv:3 [Automatic annotation] |
Nb exon | 5 |
Max annot lvl | 33208|Metazoa |
Length | 2199 |
Hectar predicted targeting category | other localisation |
Evalue | 2.13e-10 |
EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | K02A2.6-like |
COG category | OU |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1026_9a-0001 ID=EsuBft1026_9a-0001|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2199bp|location=Sequence derived from alignment at Scaffold_385:259265..263010- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCCTGACTCCCAAGGCCCTTCTCCAACTCATGAACCAGGCCGTGTC GCTATGCTCCCCACAGCGCATGGAACAGGGCACGTCACGCGCCCACCTGG TGGGAGTCATGCGGCAGAGTCGGAACCTGCTCCAGCAGCACCCGATAGAC TCCCACGCGCCCGGCTCCCAGCAGATGCGCCTGCGCGGGGAACTGTGTCA GGACTGCTTCCGCAATTTCGTCACGACCTTGGACCAGAACGCGCCCTTCT TCGACCAAGGCGGCAGCCCCCCCCAAGGCACCGTCGTGTCGGTGTTGCAG TTGTCGTCGCGGCGGTTGGCGCCGGGACAGGACACCTTCACGCGCCAAGC CAAACGGCGGAGCTCCTCCATGGCGCTGCTGGACGACGGCGCCGTTCACC TGCCCCTGCAGGATTGCCGCGACTCCGCTACGGACCCGGATACGGAGGAC ACGGACGCCCAGGTTGGGGAGTTTGACGGCCCCCGATACCGGCCTCGGGC GGCAACTGCGGCCCTCTGCGCACCGCACGACAATCGCCCGCGCGCCGACC GCAACACGTTGGCACCACCCGACTTGCGGAAGCGAGGGTGTGCGCCCCAA GCCGGCGTCCCGGATGACGACGCGAGCGATTCACGGCGCCCGCGGACGCC CGACGGCCCGCTGCCACCCGCTGCCTGGGGACCGCCTGCCGACCGCGGAC ACTCCACCAGCGACCGGCGGTTGCCACCGGATGCACCGGCACCCGACGCC GACCAGAAGACGATCCAAGAGTTCATTACGACCATGCCAAGAGTCTGCGT TAACCACGGCTGCCGCACCACCGTCTTGCTCGACACCGGGGCACCGGGGG GGGTCGTACGCCCCGGTGGCGCTAGTCCAGGCGGCGGAGCGCACCGAGAA TGGGACCGACGCATCGTCGCCAGGCGAGGGCGAGGCCTCCTTCGCGCTGT CATCCCCAGTGACAGCGGCGTTGCATCAACGTCGATCATCGGCACGGCCA TACTGCCGCTGGTCTTTCCGCCGGTGGACCTCGTCTTCCGCGCGTGCGGG ATGGAGGACGGAAGCTCGCTGCGGTGGCCGATGGTCCTGGCCCACAAACA GGACTTCGCGGGGAGGGTCAGCGCCGAGGTGGAGGCGCTGCTGCCAGGAC CCCAGTCACACGCGGCCCAACTGCTGGTAGTCTTCCCTTTCGGACCTTTC GACTTGGAGAGCGACGCTGAGATCGGCGTCGCCAAGGGGGTTCAATGGTG GACCCCAGGCACCGCGTCGAAGATCAAGCTCGTGAACCGCGCCACGGGCC CCAAGACCGTCGGACAAGGTGTGCAGGTAGCCACGGCGTACGGCACCAAC TGCGACGACCTGAAGCGGACGTTTCTCCTCAAGGAACCCGCGCCAACGCT GCTCATGCTTGCCCCGCCGCCCGCGACGCACCGCGTTGCCGTCGACTACC GCCCCCTCAATGATGTCACTAAGGATGATGACGGGGGGCTCGGCGCTTTG GCGACGATGCACCGCCGCACTAATGGTAGCAATTTCTTCATGCTACTCGA TTTGCCCTCGGCTTACCACCAGCTCTCCATCAAGGAAGCCGACTGCTACA AGATGGCCTTCATATACGCTCGGGGGCCGCTGTACGGGTTCACGCGTTGC GGCTTCGGCCTCACGATGATCCCCGCCGTCTTCTCGGCCCACCTGGGCGA CGCCCGTCGCCCGGTCGAAGCTCGAGGCGGCATCACCGCCTGGTGGCATA CCTCTGCTCGAAAATTCGCGGTCGCGTCGAAGGGTGGCGGGTCGGTATCC TCCCGTGGCGTCGGAGGCGTCAACGTCCGGAGCGGCACACCGTCGAGCAC TGGTCCCGCCGGGCCCTGGTTGCCCACCGGGCGGGAGGTGTCGTCAGGGA AGGATGCGTCGACTTGCGGTTCTGGTGTTCCAAGGAGGGCCGCGTCGAAC GCTGGCTGGACAACATCCTGTTGCACCGTGGACGAGCACGTTGCACTCAT CGAGGAGATTTTCGACCTTCTCCACGAGGCGGGGTACTCGGTGCACTTCA AGAAGTGCATGCTCGGCTTGTCGGAGGGGGAACTCCTGGGAGCCATGGTC GGCAGATCGGGCGTGCGGCCGACGCCATCCAAGATCAAGGCCGTGGAGGA AATGGAGATACCGGCGACGGACGGGGAGGTGCGGTCGCTCCTAGGCTGA back to topprotein sequence of EsuBft1026_9a-0001 >EsuBft1026_9 ID=EsuBft1026_9|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=732bp
MVLTPKALLQLMNQAVSLCSPQRMEQGTSRAHLVGVMRQSRNLLQQHPID SHAPGSQQMRLRGELCQDCFRNFVTTLDQNAPFFDQGGSPPQGTVVSVLQ LSSRRLAPGQDTFTRQAKRRSSSMALLDDGAVHLPLQDCRDSATDPDTED TDAQVGEFDGPRYRPRAATAALCAPHDNRPRADRNTLAPPDLRKRGCAPQ AGVPDDDASDSRRPRTPDGPLPPAAWGPPADRGHSTSDRRLPPDAPAPDA DQKTIQEFITTMPRVCVNHGCRTTVLLDTGAPGGVVRPGGASPGGGAHRE WDRRIVARRGRGLLRAVIPSDSGVASTSIIGTAILPLVFPPVDLVFRACG MEDGSSLRWPMVLAHKQDFAGRVSAEVEALLPGPQSHAAQLLVVFPFGPF DLESDAEIGVAKGVQWWTPGTASKIKLVNRATGPKTVGQGVQVATAYGTN CDDLKRTFLLKEPAPTLLMLAPPPATHRVAVDYRPLNDVTKDDDGGLGAL ATMHRRTNGSNFFMLLDLPSAYHQLSIKEADCYKMAFIYARGPLYGFTRC GFGLTMIPAVFSAHLGDARRPVEARGGITAWWHTSARKFAVASKGGGSVS SRGVGGVNVRSGTPSSTGPAGPWLPTGREVSSGKDASTCGSGVPRRAASN AGWTTSCCTVDEHVALIEEIFDLLHEAGYSVHFKKCMLGLSEGELLGAMV GRSGVRPTPSKIKAVEEMEIPATDGEVRSLLG back to topmRNA from alignment at Scaffold_385:259265..263010- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1026_9a-0001 ID=EsuBft1026_9a-0001|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3746bp|location=Sequence derived from alignment at Scaffold_385:259265..263010- (Ectocarpus subulatus male Bft15b) ATGGTCCTGACTCCCAAGGCCCTTCTCCAACTCATGAACCAGGCCGTGTC
GCTATGCTCCCCACAGCGCATGGAACAGGGCACGTCACGCGCCCACCTGG
TGGGAGTCATGCGGCAGAGTCGGAACCTGCTCCAGCAGCACCCGATAGAC
TCCCACGCGCCCGGCTCCCAGCAGATGCGCCTGCGCGGGGAACTGTGTCA
GGACTGCTTCCGCAATTTCGTCACGACCTTGGACCAGAACGCGCCCTTCT
TCGACCAAGGCGGCAGCCCCCCCCAAGGCACCGTCGTGTCGGTGTTGCAG
TTGTCGTCGCGGCGGTTGGCGCCGGGACAGGACACCTTCACGCGCCAAGC
CAAACGGCGGAGCTCCTCCATGGCGCTGCTGGACGACGGCGCCGTTCACC
TGCCCCTGCAGGATTGCCGCGACTCCGCTACGGACCCGGATACGGAGGAC
ACGGACGCCCAGGTTGGGGAGTTTGACGGCCCCCGATACCGGCCTCGGGC
GGCAACTGCGGCCCTCTGCGCACCGCACGACAATCGCCCGCGCGCCGACC
GCAACACGTTGGCACCACCCGACTTGCGGAAGCGAGGGTGTGCGCCCCAA
GCCGGCGTCCCGGATGACGACGCGAGCGATTCACGGCGCCCGCGGACGCC
CGACGGCCCGCTGCCACCCGCTGCCTGGGGACCGCCTGCCGACCGCGGAC
ACTCCACCAGCGACCGGCGGTTGCCACCGGATGCACCGGCACCCGACGCC
GACCAGAAGACGATCCAAGAGTTCATTACGACCATGCCAAGAGTCTGCGT
TAACCACGTCCGGTGACTCCCGTTCAAGCGTATGGTGCAAGACCACTACT
GTCGGTACCAACGCACTGACGACCCCCTTCCCCTTCAGGGCCTGACCCGC
GCCCACCGTCTTCCCGGCCCCGCACCGCCGTGGAGGACTTCGACGGCAAC
CTCCTGTACGCGGAAGAAGGCTGCCCTGGGTGGGTTGCTCTGAACGCCGC
GGCAACCGAGGGGGCGCCGGAGGCCCACTCCTGAGGTTTGTGCCCTGGAG
AACACCCCTTCGAAGGACTCTCCGGAGAACACACCTACACATCGCGGGCG
GGAACCTGTGAAGGATGCTGCTTGCGTGGCCGTCTCTGCAGCCGCTCCCG
CCTCTGTTGCGCTGCTGTCTAAGGGCTCCAACAAACCTGGGTAACGGCGT
ACTTCTAGAACGCTGCTCCGGGTGTAGGGCTGCCGCACCACCGTCTTGCT
CGACACCGGGGCACCGGGGGGGGTCGTACGCCCCGGTGGCGCTAGTCCAG
GCGGCGGAGCGCACCGAGAATGGGACCGACGCATCGTCGCCAGGCGAGGG
CGAGGCCTCCTTCGCGCTGTCATCCCCAGTGACAGCGGCGTTGCATCAAC
GTCGATCATCGGCACGGCCATACTGCCGCTGGTCTTTCCGCCGGTGGACC
TCGTCTTCCGCGCGTGCGTTCGTGTCGTTGAGGGACTGCCGTTAGGTCTG
ATCCTGGGTGCGGCCTTCATGCGACACTAGGGCAGCATAATCGGCTTTGA
CCGAGCGGGCGTGTTCAAGCCCACGAGGGGCTCCCACGGCGCACTCTTCC
TGCCCCCGGAAGCCGACGACGAACCCACGACCGTGGCGGGGTCGCCTGCA
CGCGCTACAACCAGCGTAGTGTTCCGCTCTTGTGCGCCGGCAAGTTTGGC
GTTCGCTCCGGTCGGACCCGATGTGAACGGACCGGGGTCGTCCTCGCGGC
GGCCCGCCCTCCTGCTACAGATGGCGCGGCGGCCCGCCCCCCTACTACAG
ATGGCGCCGGGCCCACCCACGAGGGGCTTCTGCGCCGTGGAATGGTGCGC
TGAGGAGAGAGGGGAGAAAGGTGACGAGAGGTTGGCTACCTCTGCTACCC
CAGCTAGCGGTCGCTGAGGAAATTGATCTTAGCTCGACTGCAGGGGATGG
AGGACGGAAGCTCGCTGCGGTGGCCGATGGTCCTGGCCCACAAACAGGAC
TTCGCGGGGAGGGTCAGCGCCGAGGTGGAGGCGCTGCTGCCAGGACCCCA
GTCACACGCGGCCCAACTGCTGGTAGTCTTCCCTTTCGGACCTTTCGACT
TGGAGAGCGACGCTGAGATCGGCGTCGCCAAGGGGGTTCAATGGTGGACC
CCAGGCACCGCGTCGAAGATCAAGCTCGTGAACCGCGCCACGGGCCCCAA
GACCGTCGGACAAGGTGTGCAGGTAGCCACGGCGTACGGCACCAACTGCG
ACGACCTGAAGCGGACGTTTCTCCTCAAGGAACCCGCGCCAACGCTGCTC
ATGCTTGCCCCGCCGCCCGCGACGGTATACACGCCGCTAGCCAGTCGACG
AGCCGGACATGCGCGTGAGCGACGCCAACACCGGGCAGCTCGGCCACCAG
AGCCGCCTCTAGCTATTGGCCTTTATTACTCGTGCCGAGGCAATGGGCTG
TTCCCCGTCAACCCCAAGATCGTCGCGGCCCTCCCTGCCGATGAGGTGCC
GATCCCGTTGGAGCACAAGAGCGTTTCGCCCATTGCGTGCAGACAGCAGC
AGTACAACCCCGTCCAAGCCCAGATCGTCAACAAACCAACCGACTTCTGG
GTGGAAGCGGACGTCATCCGCTACTCACATTCTCATGATGCAGCCGGACA
TCCATCGTCAAGAAGAAAGACGATAGCACCGCGTTGCCGTCGACTACCGC
CCCCTCAATGATGTCACTAAGGATGATGACGGGGGGCTCGGCGCTTTGGC
GACGATGCACCGCCGCACTAATGGTAGCAATTTCTTCATGCTACTCGATT
TGCCCTCGGCTTACCACCAGCTCTCCATCAAGGAAGCCGACTGCTACAAG
ATGGCCTTCATATACGCTCGGGGGCCGCTGTACGGGTTCACGCGTTGCGG
CTTCGGCCTCACGATGATCCCCGCCGTCTTCTCGGCCCACCTGGGCGACG
CCCGTCGCCCGGTCGAAGCTCGGTCAGTACCTGCGTGCAGCGGCGGCCAA
CAAGCAGAGTTCGGGCGAGGCATCTATTTTTACTCCAGCTGTTTATGCTC
TCGCACACTCCAGCGTGGTCCAGTCCAGCTCGATGGCGCCGTCGATTCGT
AGCAGGCGTTCAAGCGCCAGCGGCGCTCTGCCGGCACCGCAGCCCAATAC
AACAGCCCGGGGGCAGCCGGGGGGCCAGGGCGGTCCGAACGTAATCGTAG
CTCTTGAGGCGGTGGCAGGCGTCACTTTCCAGGAGCTCCGGTGTTAGCTG
GGGGGCATAGAAGACGGGTAGAGGCGGCATCACCGCCTGGTGGCATACCT
CTGCTCGAAAATTCGCGGTCGCGTCGAAGGGTGGCGGGTCGGTATCCTCC
CGTGGCGTCGGAGGCGTCAACGTCCGGAGCGGCACACCGTCGAGCACTGG
TCCCGCCGGGCCCTGGTTGCCCACCGGGCGGGAGGTGTCGTCAGGGAAGG
ATGCGTCGACTTGCGGTTCTGGTGTTCCAAGGAGGGCCGCGTCGAACGCT
GGCTGGACAACATCCTGTTGCACCGTGGACGAGCACGTTGCACTCATCGA
GGAGATTTTCGACCTTCTCCACGAGGCGGGGTACTCGGTGCACTTCAAGA
AGTGCATGCTCGGCTTGTCGGAGGGGGAACTCCTGGGAGCCATGGTCGGC
AGATCGGGCGTGCGGCCGACGCCATCCAAGATCAAGGCCGTGGAGGAAAT
GGAGATACCGGCGACGGACGGGGAGGTGCGGTCGCTCCTAGGCTGA back to topCoding sequence (CDS) from alignment at Scaffold_385:259265..263010- >EsuBft1026_9a-0001 ID=EsuBft1026_9a-0001|Name=EsuBft1026_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2199bp|location=Sequence derived from alignment at Scaffold_385:259265..263010- (Ectocarpus subulatus male Bft15b) ATGGTCCTGACTCCCAAGGCCCTTCTCCAACTCATGAACCAGGCCGTGTC GCTATGCTCCCCACAGCGCATGGAACAGGGCACGTCACGCGCCCACCTGG TGGGAGTCATGCGGCAGAGTCGGAACCTGCTCCAGCAGCACCCGATAGAC TCCCACGCGCCCGGCTCCCAGCAGATGCGCCTGCGCGGGGAACTGTGTCA GGACTGCTTCCGCAATTTCGTCACGACCTTGGACCAGAACGCGCCCTTCT TCGACCAAGGCGGCAGCCCCCCCCAAGGCACCGTCGTGTCGGTGTTGCAG TTGTCGTCGCGGCGGTTGGCGCCGGGACAGGACACCTTCACGCGCCAAGC CAAACGGCGGAGCTCCTCCATGGCGCTGCTGGACGACGGCGCCGTTCACC TGCCCCTGCAGGATTGCCGCGACTCCGCTACGGACCCGGATACGGAGGAC ACGGACGCCCAGGTTGGGGAGTTTGACGGCCCCCGATACCGGCCTCGGGC GGCAACTGCGGCCCTCTGCGCACCGCACGACAATCGCCCGCGCGCCGACC GCAACACGTTGGCACCACCCGACTTGCGGAAGCGAGGGTGTGCGCCCCAA GCCGGCGTCCCGGATGACGACGCGAGCGATTCACGGCGCCCGCGGACGCC CGACGGCCCGCTGCCACCCGCTGCCTGGGGACCGCCTGCCGACCGCGGAC ACTCCACCAGCGACCGGCGGTTGCCACCGGATGCACCGGCACCCGACGCC GACCAGAAGACGATCCAAGAGTTCATTACGACCATGCCAAGAGTCTGCGT TAACCACGGCTGCCGCACCACCGTCTTGCTCGACACCGGGGCACCGGGGG GGGTCGTACGCCCCGGTGGCGCTAGTCCAGGCGGCGGAGCGCACCGAGAA TGGGACCGACGCATCGTCGCCAGGCGAGGGCGAGGCCTCCTTCGCGCTGT CATCCCCAGTGACAGCGGCGTTGCATCAACGTCGATCATCGGCACGGCCA TACTGCCGCTGGTCTTTCCGCCGGTGGACCTCGTCTTCCGCGCGTGCGGG ATGGAGGACGGAAGCTCGCTGCGGTGGCCGATGGTCCTGGCCCACAAACA GGACTTCGCGGGGAGGGTCAGCGCCGAGGTGGAGGCGCTGCTGCCAGGAC CCCAGTCACACGCGGCCCAACTGCTGGTAGTCTTCCCTTTCGGACCTTTC GACTTGGAGAGCGACGCTGAGATCGGCGTCGCCAAGGGGGTTCAATGGTG GACCCCAGGCACCGCGTCGAAGATCAAGCTCGTGAACCGCGCCACGGGCC CCAAGACCGTCGGACAAGGTGTGCAGGTAGCCACGGCGTACGGCACCAAC TGCGACGACCTGAAGCGGACGTTTCTCCTCAAGGAACCCGCGCCAACGCT GCTCATGCTTGCCCCGCCGCCCGCGACGCACCGCGTTGCCGTCGACTACC GCCCCCTCAATGATGTCACTAAGGATGATGACGGGGGGCTCGGCGCTTTG GCGACGATGCACCGCCGCACTAATGGTAGCAATTTCTTCATGCTACTCGA TTTGCCCTCGGCTTACCACCAGCTCTCCATCAAGGAAGCCGACTGCTACA AGATGGCCTTCATATACGCTCGGGGGCCGCTGTACGGGTTCACGCGTTGC GGCTTCGGCCTCACGATGATCCCCGCCGTCTTCTCGGCCCACCTGGGCGA CGCCCGTCGCCCGGTCGAAGCTCGAGGCGGCATCACCGCCTGGTGGCATA CCTCTGCTCGAAAATTCGCGGTCGCGTCGAAGGGTGGCGGGTCGGTATCC TCCCGTGGCGTCGGAGGCGTCAACGTCCGGAGCGGCACACCGTCGAGCAC TGGTCCCGCCGGGCCCTGGTTGCCCACCGGGCGGGAGGTGTCGTCAGGGA AGGATGCGTCGACTTGCGGTTCTGGTGTTCCAAGGAGGGCCGCGTCGAAC GCTGGCTGGACAACATCCTGTTGCACCGTGGACGAGCACGTTGCACTCAT CGAGGAGATTTTCGACCTTCTCCACGAGGCGGGGTACTCGGTGCACTTCA AGAAGTGCATGCTCGGCTTGTCGGAGGGGGAACTCCTGGGAGCCATGGTC GGCAGATCGGGCGTGCGGCCGACGCCATCCAAGATCAAGGCCGTGGAGGA AATGGAGATACCGGCGACGGACGGGGAGGTGCGGTCGCTCCTAGGCTGA back to top
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