EsuBft1026_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1026_8a-0001
Unique NameEsuBft1026_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:253378..255123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1026_8
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from type-2 retrotransposable element r2dm os:drosophila mel [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length1693
Evalue1.95e-151
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_8aEsuBft1026_8aEctocarpus subulatus male Bft15bgeneScaffold_385 253378..255123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_8a-0001-exonEsuBft1026_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 253378..254531 -
EsuBft1026_8a-0001-exonagat-exon-96562Ectocarpus subulatus male Bft15bexonScaffold_385 254585..255123 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_8a-0001-exonagat-three_prime_utr-253Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 253378..253399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_8a-0001-cdsEsuBft1026_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 253400..254531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_8a-0001EsuBft1026_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 253400..255123 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1026_8a-0001 ID=EsuBft1026_8a-0001|Name=EsuBft1026_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1693bp|location=Sequence derived from alignment at Scaffold_385:253378..255123- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAACATAAGAGTACGCCCCCAGGCAGGTTTCCGAAGGAAGAGGGG
GTGCGTAGACCATGTATTCACGGTAGGGAAAATCATTCAAGGCAGAAAGA
GGACGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATAC
GACACCGTATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGAT
CAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAA
GCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAG
GGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCAT
CAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAG
GGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTC
GGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAA
GAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTAAAATGGAAGTGGG
GGATCGAGGAGATTGCAGTAGTGCACCAGTACACATACGTCGGAGTAGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGCACCCAATACTCGCAAACCGGCACCTCGAT
ACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTGCCGCCGCTAGA
GTACGCCGGAGAGGTATGGGGAGGAAACAAGAAGGTAGTGAAAGAACTCG
AGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAAGCGC
ACAAGTAATACAGCCGTGAGGGCAGAACTGGGGATCCAATCCCTACGGTC
GGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGG
GAGAGGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAA
AAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATG
GAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTAC
AGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGATGAACAG
AATCTGAGGAAAGAATCCAGGGATAAGGAGGGTCTGGAAGTGTACGGAAT
GTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATG
CAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGA
GAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTCAA
ATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCAGAAT
GTCCGTGGTACAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATA
GATGGGCAGGGAGATGTTTGAGGCATGGAATAGAGCGGAAAGG
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protein sequence of EsuBft1026_8a-0001

>EsuBft1026_8 ID=EsuBft1026_8|Name=EsuBft1026_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=556bp
MKNIRVRPQAGFRRKRGCVDHVFTVGKIIQGRKRTGKPTYCFFLDVKKAY
DTVWRNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQ
GVPQGCTLSPTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLFADDFV
GMSDTPEGLQLQIDAAKKFTDKWRLSANVKWKWGIEEIAVVHQYTYVGVG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPILANRHLD
TRIKLTVLKSVIVPPLEYAGEVWGGNKKVVKELEAAQMKAAKTILGCSKR
TSNTAVRAELGIQSLRSGRDARKLTWQYRMCGMGEERLPRIVWEAKWANK
KRGRQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKISVACAERDEQ
NLRKESRDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLR
ERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPWYKEREVYVTELGKI
DGQGDV
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mRNA from alignment at Scaffold_385:253378..255123-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1026_8a-0001 ID=EsuBft1026_8a-0001|Name=EsuBft1026_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1746bp|location=Sequence derived from alignment at Scaffold_385:253378..255123- (Ectocarpus subulatus male Bft15b)
ATGAAAAACATAAGAGTACGCCCCCAGGCAGGTTTCCGAAGGAAGAGGGG
GTGCGTAGACCATGTATTCACGGTAGGGAAAATCATTCAAGGCAGAAAGA
GGACGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATAC
GACACCGTATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGAT
CAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAA
GCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAG
GGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCAT
CAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAG
GGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTC
GGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAA
GAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTAAAGTAGAGTGCGG
CATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGT
GGGGGATCGAGGAGATTGCAGTAGTGCACCAGTACACATACGTCGGAGTA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGCACCCAATACTCGCAAACCGGCACCTC
GATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTGCCGCCGCT
AGAGTACGCCGGAGAGGTATGGGGAGGAAACAAGAAGGTAGTGAAAGAAC
TCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAAG
CGCACAAGTAATACAGCCGTGAGGGCAGAACTGGGGATCCAATCCCTACG
GTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGA
TGGGAGAGGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGCAAAC
AAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGT
ATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTC
TACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGATGAA
CAGAATCTGAGGAAAGAATCCAGGGATAAGGAGGGTCTGGAAGTGTACGG
AATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGG
ATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTT
CGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTT
CAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCAG
AATGTCCGTGGTACAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAA
ATAGATGGGCAGGGAGATGTTTGAGGCATGGAATAGAGCGGAAAGG
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Coding sequence (CDS) from alignment at Scaffold_385:253378..255123-

>EsuBft1026_8a-0001 ID=EsuBft1026_8a-0001|Name=EsuBft1026_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1671bp|location=Sequence derived from alignment at Scaffold_385:253378..255123- (Ectocarpus subulatus male Bft15b)
ATGAAAAACATAAGAGTACGCCCCCAGGCAGGTTTCCGAAGGAAGAGGGG
GTGCGTAGACCATGTATTCACGGTAGGGAAAATCATTCAAGGCAGAAAGA
GGACGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATAC
GACACCGTATGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGAT
CAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAA
GCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAG
GGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCAT
CAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAG
GGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTC
GGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAA
GAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTAAAATGGAAGTGGG
GGATCGAGGAGATTGCAGTAGTGCACCAGTACACATACGTCGGAGTAGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTGCACCCAATACTCGCAAACCGGCACCTCGAT
ACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTGCCGCCGCTAGA
GTACGCCGGAGAGGTATGGGGAGGAAACAAGAAGGTAGTGAAAGAACTCG
AGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAAGCGC
ACAAGTAATACAGCCGTGAGGGCAGAACTGGGGATCCAATCCCTACGGTC
GGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGG
GAGAGGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAA
AAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATG
GAAGGGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTAC
AGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGATGAACAG
AATCTGAGGAAAGAATCCAGGGATAAGGAGGGTCTGGAAGTGTACGGAAT
GTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATG
CAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGA
GAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTCAA
ATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCAGAAT
GTCCGTGGTACAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATA
GATGGGCAGGGAGATGTTTGA
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