EsuBft1026_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1026_7a-0001
Unique NameEsuBft1026_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:245583..248360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1026_7
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from type-2 retrotransposable element r2dm os:drosophila mel [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length2622
Hectar predicted targeting categoryother localisation
Evalue2.32e-51
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_7aEsuBft1026_7aEctocarpus subulatus male Bft15bgeneScaffold_385 245583..248360 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_7a-0001-exonEsuBft1026_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 245583..246944 +
EsuBft1026_7a-0001-exonagat-exon-96560Ectocarpus subulatus male Bft15bexonScaffold_385 247042..247824 +
EsuBft1026_7a-0001-exonagat-exon-96561Ectocarpus subulatus male Bft15bexonScaffold_385 247884..248360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_7a-0001-cdsEsuBft1026_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 245583..246944 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_7a-0001-exonagat-three_prime_utr-252Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 248337..248360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_7a-0001EsuBft1026_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 245583..248336 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1026_7a-0001 ID=EsuBft1026_7a-0001|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2622bp|location=Sequence derived from alignment at Scaffold_385:245583..248360+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGT
GGGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTA
ACGCCAGGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTC
CATAGCCGTGACCATCTCGTGGTACTAATGGACGCCAACGCACGTACTGG
CAGGAGGCGAGACGGATGCTGCGAAGCCAAGATTATGGGCGCGTACGGAC
GCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGAC
AACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAGGTGGAGT
GCAGCACACATTCCAGAGCTCGAACAATGGGAAGGAGAAGTACCGCCTCG
ACTTCATCCTCATACGTCAGACGGACCGGCGTTTCGTGCGTAACATCTCC
GTCAAACGTGTCAACTTCAAGGACTCTGACCACAACCTCGTCCTTACGAC
TGTCCGCCTCCTTCCCCGTGTCGCACCCAACCGACCAGTGCGGGGGAACG
GCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAA
CACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCAC
GGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGG
TGATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGG
CAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTT
CAAGGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACA
GCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAG
CGCAGCATCGCGAGGTGGAAAGCACTGGAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGACACGATGGAGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCACA
CCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCG
CGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAG
GCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTT
CGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCA
TGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGAC
GTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAA
CTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGG
ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTAC
ACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGGCGGA
CGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCT
CGCGCTCGCCGGAGAGTCTCGAGCAGATGGTGTCGGTCATCGTGCGCGTG
GCCGGCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGTG
CATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCG
GCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATC
TCCGCGGACGGGAAGGCCGAGCGTGCAAGTGCTACCGCCGGAACAGCTGA
AGTGGTGGAGGCTCCCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGG
AGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTGC
ATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCA
GGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCA
AACGGAGACTGTGTTTCGCGGGCTTTGTTATATGCATGGAGGACAACCGC
CTCCCCAAGCGCACGCTGTTGGGAGTGATGGCGGGGGGCGTAGGATACCG
GGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGG
TCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAACAGAGCGCC
AAGGACTCGGAGGTGTGGAACAACGAGGTCGAGGACGGGGCGGCATGACT
CATGAGGAAATACCACAGGCAG
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protein sequence of EsuBft1026_7a-0001

>EsuBft1026_7 ID=EsuBft1026_7|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=865bp
MKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNARDSFWTALDAAIREV
HSRDHLVVLMDANARTGRRRDGCCEAKIMGAYGRDIMNNNGERLLGLASD
NQLSLTNTYFRTPKGGVQHTFQSSNNGKEKYRLDFILIRQTDRRFVRNIS
VKRVNFKDSDHNLVLTTVRLLPRVAPNRPVRGNGGSSRIRIDLERLRKDK
HLRVAFQNRASSRPPPTALRRPTGETAAELTATVMSAAAETAPLARCARG
QRGWYTSEAQHEISEAFKEIKAAQQQLRGASKNSAFEATLKAMLKAARKK
RSIARWKALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XHDGGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTK
AYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFD
VGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEY
TGKKGRSAGKKTTVVADAEALWAMLYADDAAIVSRSPESLEQMVSVIVRV
AGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTI
SADGKAERASATAGTAEVVEAPLYGCASWSLTAEHYTKLNGTHRQFLTRC
IGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVICMEDNR
LPKRTLLGVMAGGVGYRGGQESDWVSRLGEDLVVFNMGDEKEGGKWKQSA
KDSEVWNNEVEDGAA
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mRNA from alignment at Scaffold_385:245583..248360+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1026_7a-0001 ID=EsuBft1026_7a-0001|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2778bp|location=Sequence derived from alignment at Scaffold_385:245583..248360+ (Ectocarpus subulatus male Bft15b)
ATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGT GGGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTA ACGCCAGGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTC CATAGCCGTGACCATCTCGTGGTACTAATGGACGCCAACGCACGTACTGG CAGGAGGCGAGACGGATGCTGCGAAGCCAAGATTATGGGCGCGTACGGAC GCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGAC AACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAGGTGGAGT GCAGCACACATTCCAGAGCTCGAACAATGGGAAGGAGAAGTACCGCCTCG ACTTCATCCTCATACGTCAGACGGACCGGCGTTTCGTGCGTAACATCTCC GTCAAACGTGTCAACTTCAAGGACTCTGACCACAACCTCGTCCTTACGAC TGTCCGCCTCCTTCCCCGTGTCGCACCCAACCGACCAGTGCGGGGGAACG GCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAA CACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCAC GGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGG TGATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGG CAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTT CAAGGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACA GCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAG CGCAGCATCGCGAGGTGGAAAGCACTGGAAANNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NGACACGATGGAGTGCGGCAACTACGGGGGCATCTCTCTTGTCGCACACG CCGGCAAGGTGCTGCTTACGGTTGTCGCTACACGACTGAGCCACTACTGC GAGCGATAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCACACCG GTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGA GGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCA TACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGG CGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGA GGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTG GGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTT GTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACC CCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACG GGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGGCGGACGC GGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGC GCTCGCCGGAGAGTCTCGAGCAGATGGTGTCGGTCATCGTGCGCGTGGCC GGCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGTGCAT GCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCC AGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCC GCGGACGGGAAGGCCGAGCGTGCAAGTGCTACCGCCGGAACAGTGATTCG ATGTACGACAGGCGACGGGCCGACCGCTAGCTCAAGATCCGGCTAATCCA GGCTGAAGTGGTGGAGGCTCCCCTATATGGGTGCGCCTCGTGGAGCCTAA CAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACA CGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTA TGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCG TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATATGCATGGAGGAC AACCGCCTCCCCAAGCGCACGCTGTTGGGAGTGATGGCGGGGGGCGTAGG ATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACC TCGTGGTCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAACAG AGCGCCAAGGACTCGGAGGTGTGGAACAACGAGGTCGAGGACGGGGCGGC ATGACTCATGAGGAAATACCACAGGCAG
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Coding sequence (CDS) from alignment at Scaffold_385:245583..248360+

>EsuBft1026_7a-0001 ID=EsuBft1026_7a-0001|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2598bp|location=Sequence derived from alignment at Scaffold_385:245583..248360+ (Ectocarpus subulatus male Bft15b)
ATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGT
GGGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTA
ACGCCAGGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTC
CATAGCCGTGACCATCTCGTGGTACTAATGGACGCCAACGCACGTACTGG
CAGGAGGCGAGACGGATGCTGCGAAGCCAAGATTATGGGCGCGTACGGAC
GCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGAC
AACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAGGTGGAGT
GCAGCACACATTCCAGAGCTCGAACAATGGGAAGGAGAAGTACCGCCTCG
ACTTCATCCTCATACGTCAGACGGACCGGCGTTTCGTGCGTAACATCTCC
GTCAAACGTGTCAACTTCAAGGACTCTGACCACAACCTCGTCCTTACGAC
TGTCCGCCTCCTTCCCCGTGTCGCACCCAACCGACCAGTGCGGGGGAACG
GCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAA
CACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCAC
GGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGG
TGATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGG
CAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTT
CAAGGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACA
GCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAG
CGCAGCATCGCGAGGTGGAAAGCACTGGAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGACACGATGGAGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCACA
CCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCG
CGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAG
GCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTT
CGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCA
TGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGAC
GTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAA
CTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGG
ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTAC
ACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGGCGGA
CGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCT
CGCGCTCGCCGGAGAGTCTCGAGCAGATGGTGTCGGTCATCGTGCGCGTG
GCCGGCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGTG
CATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCG
GCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATC
TCCGCGGACGGGAAGGCCGAGCGTGCAAGTGCTACCGCCGGAACAGCTGA
AGTGGTGGAGGCTCCCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGG
AGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTGC
ATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCA
GGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCA
AACGGAGACTGTGTTTCGCGGGCTTTGTTATATGCATGGAGGACAACCGC
CTCCCCAAGCGCACGCTGTTGGGAGTGATGGCGGGGGGCGTAGGATACCG
GGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGG
TCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAACAGAGCGCC
AAGGACTCGGAGGTGTGGAACAACGAGGTCGAGGACGGGGCGGCATGA
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