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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 6500.XP_005092035.1 |
ProteomeId | EsuBft1026_7 |
Owner | apollo_admin@sb-roscoff.fr |
Note | retrovirus-related pol polyprotein from type-2 retrotransposable element r2dm os:drosophila mel [Automatic annotation] |
Nb exon | 3 |
Max annot lvl | 33208|Metazoa |
Length | 2622 |
Hectar predicted targeting category | other localisation |
Evalue | 2.32e-51 |
EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | Ribonuclease H protein |
COG category | S |
Cross References
External references for this mRNA
Database | Accession |
GO | 0006259 |
GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1026_7a-0001 ID=EsuBft1026_7a-0001|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2622bp|location=Sequence derived from alignment at Scaffold_385:245583..248360+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGT GGGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTA ACGCCAGGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTC CATAGCCGTGACCATCTCGTGGTACTAATGGACGCCAACGCACGTACTGG CAGGAGGCGAGACGGATGCTGCGAAGCCAAGATTATGGGCGCGTACGGAC GCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGAC AACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAGGTGGAGT GCAGCACACATTCCAGAGCTCGAACAATGGGAAGGAGAAGTACCGCCTCG ACTTCATCCTCATACGTCAGACGGACCGGCGTTTCGTGCGTAACATCTCC GTCAAACGTGTCAACTTCAAGGACTCTGACCACAACCTCGTCCTTACGAC TGTCCGCCTCCTTCCCCGTGTCGCACCCAACCGACCAGTGCGGGGGAACG GCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAA CACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCAC GGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGG TGATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGG CAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTT CAAGGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACA GCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAG CGCAGCATCGCGAGGTGGAAAGCACTGGAAANNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NGACACGATGGAGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCACA CCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCG CGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAG GCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTT CGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCA TGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGAC GTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAA CTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGG ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTAC ACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGGCGGA CGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCT CGCGCTCGCCGGAGAGTCTCGAGCAGATGGTGTCGGTCATCGTGCGCGTG GCCGGCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGTG CATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCG GCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATC TCCGCGGACGGGAAGGCCGAGCGTGCAAGTGCTACCGCCGGAACAGCTGA AGTGGTGGAGGCTCCCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGG AGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTGC ATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCA GGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCA AACGGAGACTGTGTTTCGCGGGCTTTGTTATATGCATGGAGGACAACCGC CTCCCCAAGCGCACGCTGTTGGGAGTGATGGCGGGGGGCGTAGGATACCG GGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGG TCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAACAGAGCGCC AAGGACTCGGAGGTGTGGAACAACGAGGTCGAGGACGGGGCGGCATGACT CATGAGGAAATACCACAGGCAG back to topprotein sequence of EsuBft1026_7a-0001 >EsuBft1026_7 ID=EsuBft1026_7|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=865bp
MKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNARDSFWTALDAAIREV HSRDHLVVLMDANARTGRRRDGCCEAKIMGAYGRDIMNNNGERLLGLASD NQLSLTNTYFRTPKGGVQHTFQSSNNGKEKYRLDFILIRQTDRRFVRNIS VKRVNFKDSDHNLVLTTVRLLPRVAPNRPVRGNGGSSRIRIDLERLRKDK HLRVAFQNRASSRPPPTALRRPTGETAAELTATVMSAAAETAPLARCARG QRGWYTSEAQHEISEAFKEIKAAQQQLRGASKNSAFEATLKAMLKAARKK RSIARWKALEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XHDGGILPEEQSGFRPHRSTLDMLFAIQRLHELARKKSTAVFACFVDLTK AYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRARVRTDDGQYSEWFD VGQGLRQGCNLAPLLFNLFFAAMLMVAVAEFDKDPKVTADMVKIGTQVEY TGKKGRSAGKKTTVVADAEALWAMLYADDAAIVSRSPESLEQMVSVIVRV AGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTI SADGKAERASATAGTAEVVEAPLYGCASWSLTAEHYTKLNGTHRQFLTRC IGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVICMEDNR LPKRTLLGVMAGGVGYRGGQESDWVSRLGEDLVVFNMGDEKEGGKWKQSA KDSEVWNNEVEDGAA back to topmRNA from alignment at Scaffold_385:245583..248360+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1026_7a-0001 ID=EsuBft1026_7a-0001|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2778bp|location=Sequence derived from alignment at Scaffold_385:245583..248360+ (Ectocarpus subulatus male Bft15b) ATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGT
GGGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTA
ACGCCAGGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTC
CATAGCCGTGACCATCTCGTGGTACTAATGGACGCCAACGCACGTACTGG
CAGGAGGCGAGACGGATGCTGCGAAGCCAAGATTATGGGCGCGTACGGAC
GCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGAC
AACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAGGTGGAGT
GCAGCACACATTCCAGAGCTCGAACAATGGGAAGGAGAAGTACCGCCTCG
ACTTCATCCTCATACGTCAGACGGACCGGCGTTTCGTGCGTAACATCTCC
GTCAAACGTGTCAACTTCAAGGACTCTGACCACAACCTCGTCCTTACGAC
TGTCCGCCTCCTTCCCCGTGTCGCACCCAACCGACCAGTGCGGGGGAACG
GCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAA
CACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCAC
GGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGG
TGATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGG
CAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTT
CAAGGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACA
GCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAG
CGCAGCATCGCGAGGTGGAAAGCACTGGAAANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGACACGATGGAGTGCGGCAACTACGGGGGCATCTCTCTTGTCGCACACG
CCGGCAAGGTGCTGCTTACGGTTGTCGCTACACGACTGAGCCACTACTGC
GAGCGATAGGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCACACCG
GTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGA
GGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCA
TACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGG
CGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGA
GGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTG
GGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTT
GTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACC
CCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACG
GGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGGCGGACGC
GGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGC
GCTCGCCGGAGAGTCTCGAGCAGATGGTGTCGGTCATCGTGCGCGTGGCC
GGCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGTGCAT
GCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCGGCC
AGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTCC
GCGGACGGGAAGGCCGAGCGTGCAAGTGCTACCGCCGGAACAGTGATTCG
ATGTACGACAGGCGACGGGCCGACCGCTAGCTCAAGATCCGGCTAATCCA
GGCTGAAGTGGTGGAGGCTCCCCTATATGGGTGCGCCTCGTGGAGCCTAA
CAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACA
CGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTA
TGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCG
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATATGCATGGAGGAC
AACCGCCTCCCCAAGCGCACGCTGTTGGGAGTGATGGCGGGGGGCGTAGG
ATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACC
TCGTGGTCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAACAG
AGCGCCAAGGACTCGGAGGTGTGGAACAACGAGGTCGAGGACGGGGCGGC
ATGACTCATGAGGAAATACCACAGGCAG back to topCoding sequence (CDS) from alignment at Scaffold_385:245583..248360+ >EsuBft1026_7a-0001 ID=EsuBft1026_7a-0001|Name=EsuBft1026_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2598bp|location=Sequence derived from alignment at Scaffold_385:245583..248360+ (Ectocarpus subulatus male Bft15b) ATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGT GGGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTA ACGCCAGGGACTCCTTCTGGACTGCTCTCGACGCAGCGATCCGGGAGGTC CATAGCCGTGACCATCTCGTGGTACTAATGGACGCCAACGCACGTACTGG CAGGAGGCGAGACGGATGCTGCGAAGCCAAGATTATGGGCGCGTACGGAC GCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGAC AACCAACTCTCCCTGACCAACACCTACTTCCGGACACCGAAAGGTGGAGT GCAGCACACATTCCAGAGCTCGAACAATGGGAAGGAGAAGTACCGCCTCG ACTTCATCCTCATACGTCAGACGGACCGGCGTTTCGTGCGTAACATCTCC GTCAAACGTGTCAACTTCAAGGACTCTGACCACAACCTCGTCCTTACGAC TGTCCGCCTCCTTCCCCGTGTCGCACCCAACCGACCAGTGCGGGGGAACG GCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAA CACCTACGGGTCGCCTTCCAAAACAGGGCCTCCAGCCGCCCTCCGCCCAC GGCGCTCAGGCGGCCAACGGGAGAGACCGCCGCCGAGCTGACGGCTACGG TGATGTCGGCCGCTGCTGAGACCGCGCCGCTGGCGAGGTGCGCACGAGGG CAGAGAGGCTGGTACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTT CAAGGAGATTAAGGCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACA GCGCCTTCGAGGCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAG CGCAGCATCGCGAGGTGGAAAGCACTGGAAANNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NGACACGATGGAGGCATCCTCCCGGAGGAGCAGAGCGGTTTCCGCCCACA CCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCG CGAGGAAGAAGAGTACTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAG GCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTT CGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCA TGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGAC GTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAA CTTGTTCTTTGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGG ACCCCAAGGTGACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTAC ACGGGCAAGAAGGGCAGGTCGGCGGGGAAGAAGACGACGGTGGTGGCGGA CGCGGAGGCCTTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCT CGCGCTCGCCGGAGAGTCTCGAGCAGATGGTGTCGGTCATCGTGCGCGTG GCCGGCCTGTTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGTG CATGCTGCCGAAAGGGATCGAGGAACGCCCGTTCACGGTCAGCGCCGCCG GCCAGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATC TCCGCGGACGGGAAGGCCGAGCGTGCAAGTGCTACCGCCGGAACAGCTGA AGTGGTGGAGGCTCCCCTATATGGGTGCGCCTCGTGGAGCCTAACAGCGG AGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACACGGTGC ATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCA GGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCA AACGGAGACTGTGTTTCGCGGGCTTTGTTATATGCATGGAGGACAACCGC CTCCCCAAGCGCACGCTGTTGGGAGTGATGGCGGGGGGCGTAGGATACCG GGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGG TCTTCAACATGGGAGACGAAAAGGAAGGGGGTAAATGGAAACAGAGCGCC AAGGACTCGGAGGTGTGGAACAACGAGGTCGAGGACGGGGCGGCATGA back to top
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