EsuBft1026_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1026_6a-0001
Unique Name	EsuBft1026_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_385	contig	Scaffold_385:240242..242563 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1026_6
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	232
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_6a	EsuBft1026_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_385 240242..242563 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_6a-0001-exon	EsuBft1026_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 240242..242563 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_6a-0001-cds	EsuBft1026_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_385 240242..240391 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_6a-0001-exon	agat-three_prime_utr-251	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_385 240392..242563 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1026_6a-0001	EsuBft1026_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_385 240242..240391 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_385:240242..242563+
coding sequence from alignment at Scaffold_385:240242..242563+

spliced messenger RNA

>EsuBft1026_6a-0001 ID=EsuBft1026_6a-0001|Name=EsuBft1026_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2322bp|location=Sequence derived from alignment at Scaffold_385:240242..242563+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
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ACTCATACTCACATTTTAGTATGGCTCTTCATACTCTACTCAACGTACTC
TTGCGGTTTAGTACGACTTTTCATACTCTACTAAACATACTCTTTGAGTT
CAGTACCTGACCTCTGTACTCTACTCAGGTGAGTAGAGTATTCACCTCTC
TCATACTCTACTCTACTCAGCCGTTAGTACAGGTTCTCCATACTCTACTA
AACATACCATACTATACTAAAC

protein sequence of EsuBft1026_6a-0001

>EsuBft1026_6 ID=EsuBft1026_6|Name=EsuBft1026_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_385:240242..242563+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1026_6a-0001 ID=EsuBft1026_6a-0001|Name=EsuBft1026_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2322bp|location=Sequence derived from alignment at Scaffold_385:240242..242563+ (Ectocarpus subulatus male Bft15b)
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ACTCATACTCACATTTTAGTATGGCTCTTCATACTCTACTCAACGTACTC
TTGCGGTTTAGTACGACTTTTCATACTCTACTAAACATACTCTTTGAGTT
CAGTACCTGACCTCTGTACTCTACTCAGGTGAGTAGAGTATTCACCTCTC
TCATACTCTACTCTACTCAGCCGTTAGTACAGGTTCTCCATACTCTACTA
AACATACCATACTATACTAAAC

Coding sequence (CDS) from alignment at Scaffold_385:240242..242563+

>EsuBft1026_6a-0001 ID=EsuBft1026_6a-0001|Name=EsuBft1026_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_385:240242..242563+ (Ectocarpus subulatus male Bft15b)
ATGGCAAACACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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