EsuBft1026_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1026_5a-0001
Unique NameEsuBft1026_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:231161..231608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1026_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length44
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_5aEsuBft1026_5aEctocarpus subulatus male Bft15bgeneScaffold_385 231161..231608 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_5a-0001-exonEsuBft1026_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 231161..231608 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_5a-0001-exonagat-three_prime_utr-250Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 231161..231434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_5a-0001-cdsEsuBft1026_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 231435..231608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1026_5a-0001EsuBft1026_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 231435..231608 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1026_5a-0001 ID=EsuBft1026_5a-0001|Name=EsuBft1026_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=448bp|location=Sequence derived from alignment at Scaffold_385:231161..231608- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACAACGAGCCAT
CAAACGAGGAGACAGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCA
ACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAAAGCAAGCGA
GAAGAGACCGACCGCGTGACGTGACATGTTGCGGTTGAATTTCAGCGACT
AGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACTGTCTC
TACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCGTCTTTCTT
TGGTTTATTTCGTTTTTTTTTTTTTTTCTGGCACGTACTGTTGACCCTTG
GGGTCCTTCCGGAAGGCTACCCCCAGGCTGGTGGTGCGCACGTTCCACTA
TTTGTTTATATATTTGTTTATGATTTTTTTGTTTTCTTGTATTTTATC
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protein sequence of EsuBft1026_5a-0001

>EsuBft1026_5 ID=EsuBft1026_5|Name=EsuBft1026_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MASWHKGEEKASRQRAIKRGDSGPKNSLDTAPINGAGGGREETAREESKR
EETDRVT
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mRNA from alignment at Scaffold_385:231161..231608-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1026_5a-0001 ID=EsuBft1026_5a-0001|Name=EsuBft1026_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=448bp|location=Sequence derived from alignment at Scaffold_385:231161..231608- (Ectocarpus subulatus male Bft15b)
ATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACAACGAGCCAT
CAAACGAGGAGACAGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCA
ACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAAAGCAAGCGA
GAAGAGACCGACCGCGTGACGTGACATGTTGCGGTTGAATTTCAGCGACT
AGTTTTTCTGTTGCCCTCTCCCCCGTTTGCTGTCGCGTTCAGACTGTCTC
TACGGATATCCCTGTCTCTGTGCGAGTTTGTTTATGTCCTCGTCTTTCTT
TGGTTTATTTCGTTTTTTTTTTTTTTTCTGGCACGTACTGTTGACCCTTG
GGGTCCTTCCGGAAGGCTACCCCCAGGCTGGTGGTGCGCACGTTCCACTA
TTTGTTTATATATTTGTTTATGATTTTTTTGTTTTCTTGTATTTTATC
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Coding sequence (CDS) from alignment at Scaffold_385:231161..231608-

>EsuBft1026_5a-0001 ID=EsuBft1026_5a-0001|Name=EsuBft1026_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_385:231161..231608- (Ectocarpus subulatus male Bft15b)
ATGGCCTCTTGGCACAAGGGCGAGGAGAAGGCCAGCCGACAACGAGCCAT
CAAACGAGGAGACAGCGGGCCCAAAAATAGTCTAGATACGGCACCAATCA
ACGGGGCGGGAGGGGGGCGGGAGGAAACGGCGCGGGAAGAAAGCAAGCGA
GAAGAGACCGACCGCGTGACGTGA
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