EsuBft1025_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1025_4a-0001
Unique NameEsuBft1025_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_38contigScaffold_38:70342..75547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FN87
ProteomeIdEsuBft1025_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length162
Hectar predicted targeting categoryother localisation
Evalue1.88e-128
EggNOG OGs28KV4@1|root,2QTBH@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003370.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_4aEsuBft1025_4aEctocarpus subulatus male Bft15bgeneScaffold_38 70342..75547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_4a-0001EsuBft1025_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_38 71313..75026 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_4a-0001-exonagat-exon-77443Ectocarpus subulatus male Bft15bexonScaffold_38 70342..70408 +
EsuBft1025_4a-0001-exonagat-exon-77442Ectocarpus subulatus male Bft15bexonScaffold_38 71279..71477 +
EsuBft1025_4a-0001-exonagat-exon-77440Ectocarpus subulatus male Bft15bexonScaffold_38 72145..72489 +
EsuBft1025_4a-0001-exonagat-exon-77441Ectocarpus subulatus male Bft15bexonScaffold_38 73132..73322 +
EsuBft1025_4a-0001-exonEsuBft1025_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_38 73840..73976 +
EsuBft1025_4a-0001-exonagat-exon-77439Ectocarpus subulatus male Bft15bexonScaffold_38 74863..75547 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_4a-0001-exonagat-five_prime_utr-147Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_38 70342..70408 +
EsuBft1025_4a-0001-exonagat-five_prime_utr-148Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_38 71279..71312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_4a-0001-cdsEsuBft1025_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_38 71313..71477 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1025_4a-0001-exonagat-three_prime_utr-247Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_38 75027..75547 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1025_4a-0001 ID=EsuBft1025_4a-0001|Name=EsuBft1025_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1624bp|location=Sequence derived from alignment at Scaffold_38:70342..75547+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCACGCGTACAAAGGCACTTGAGGGGCAGCGAAAACCTCGTATGTGAGAG
AGAGAGCGGAGAAAAAGCGACCCATTCTTGACCCGCGGCGGACGTGCAAA
CATGGCATCCGTGGCGGTTACTCCCGAGAAACCGGGCGGCGGAGATGGCG
GAGAGCAGCATATCAGACAACAACAACAACAGCATCAACAACGGCGACGG
CGGCGGTTGTGCGTGTGTACCAGAGTGCACCAGAACAATGCGCACCGCTC
CGTGGACTTGGTCAAGGTGCGGGAGTTCCTCGACACGGCCTTGCTCTACG
CAGACAGCATTGCCATCGCCGTAGGAACGCCGCCGCCGTCAGCGGATCAA
CACGGCACCACAACCAGCACCGCCGCCGCCGACTCAACCCCACCGCTATT
GCAGTCCATAACTCTGGCTGCTAGGGAAGCAGAGAGAAAGGCGCCGCCCG
ACCGCGGCGTCGAGTCAGTCGGGGAGGAAGGGGGGGGCGAGAGGGGTGCG
GCGGGCGTGGTGAACGTGTTCGAGGTGACGCCGTGGGGAAAGTTCACGCC
GGCGCTGAACGCCCTGCTGGGATTCGCCTCTCGCGACGGGGCTGACCTTG
TCATGTTCCAGTCTCTGGAGACCACCGTGGGGAAGGACGCCGTATCGGGC
ATGGAGGCCCACATGGGGCCCGCAGATCTGGTCGTCGGCGCGGCCCTCAC
GGGACACGCCTTCCAGGGCGGGGAAACCGTGGAGCTGACGGGGGTCACGA
CGCCGTGGAACACGCTGGCGCTCTGGGACGTGGCCAAGCTTGCCAAGCTA
GGGTTCTTGGGCGTCGCCGAAGGGCTGCTTCCCGGCGTTCCGGCGGGGGT
AGAGGAGGTCACGGCCATCGCAGCGCTGCAGGCGTTACTGGGGGCCGAGC
ACGCCCGCGCCAAGCTTGTGCGACTACCGCAGGCGAGTCGTGCGGTGGCA
GACGGCATGGGAGGACGAGGGCAGAAGGCGGTGGCACGAGTCGAAGATGT
CCAGCAAGCGCGAGAGGGCCGACAAGCAGATGTCGGCGCTGGGCATCAAA
AAGGGTATTGTGGAACATCTAGGGTGACGAGCGAGGACTGGAAAGAAAGT
TGACGGTGCCTCTGTACCCGTGGGGCACGGCGAAACGACGGAAAGGACAA
GCGGGGTCGCTTGTGGGCGGACATGGCCGTCTAAGACGGCTTTCATGAGC
AGACGCTCGAGCTCGGCGTCGCGCAGAGAGTCCCATCGGTCCGCTGCAGG
GCCTTGCACATAGATTTTCGTTTGTGTATACAAGGGGTGTATGACGGAAG
GAACAGCGTGTAGGGAGGAAATCATCTGCATGCTCCAGGGGTGGTTGAAT
TCTTGGTGGTGCTGTTGTTTCGCGATGGATTCCATTGAACTGACGAACCA
ACAAACCATGGGAGCTCGTTGAGCCCACAGAAAACCGTGTCGCCATCAGG
TGCCACCGCCGTCTGGCAGCAGACGGCCGAAGACAAATCGGAGTCACATT
GTAACGAATGTGGTCCAGCGAACTCTCGTCCAGAACTTCCCCATCGTGCC
TTCTTTTCGCGGCCGCCACGTGACCAGGGGGCGTTGACGTATCCCGTGCG
CGCTGTGTAATAGTTTCTCGCCAA
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protein sequence of EsuBft1025_4a-0001

>EsuBft1025_4 ID=EsuBft1025_4|Name=EsuBft1025_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=333bp
MASVAVTPEKPGGGDGGEQHIRQQQQQHQQRRRRRLCVCTRVHQNNAHRS
VDLVKVREFLDTALLYADSIAIAVGTPPPSADQHGTTTSTAAADSTPPLL
QSITLAAREAERKAPPDRGVESVGEEGGGERGAAGVVNVFEVTPWGKFTP
ALNALLGFASRDGADLVMFQSLETTVGKDAVSGMEAHMGPADLVVGAALT
GHAFQGGETVELTGVTTPWNTLALWDVAKLAKLGFLGVAEGLLPGVPAGV
EEVTAIAALQALLGAEHARAKLVRLPQASRAVADGMGGRGQKAVARVEDV
QQAREGRQADVGAGHQKGYCGTSRVTSEDWKES
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mRNA from alignment at Scaffold_38:70342..75547+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1025_4a-0001 ID=EsuBft1025_4a-0001|Name=EsuBft1025_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5206bp|location=Sequence derived from alignment at Scaffold_38:70342..75547+ (Ectocarpus subulatus male Bft15b)
GCACGCGTACAAAGGCACTTGAGGGGCAGCGAAAACCTCGTATGTGAGAG
AGAGAGCGGAGAAAAAGGTATGAGTGCGCCAAGCCAGGTCGTGGCTGCGC
TTGCTTGTACACAGAGGGCTCAGAGTTGCCTTTGCCGCACAAGTCCCAAA
GGTTCAACGCGTGACTGCGGGCACACATGAACACCAAAGAGGCACGTGTT
GTACAATACCTAGATAGCATCCTGTTCGCGCAACATGGGCAACGAATCTC
CCTGCCGCGTTCGTCTTGCACGAGTTGCAAAATCGCTCGGAACTCGACCA
CCGATGAGGGGCTAGCATATCAACAGGGCACGCGGAAGAGAGGGTTCGCT
GAAAAATCACTTATGTACCGCTATGTAGTGCAACGACGCCCTCCGGCCGC
GATCTGACCCATTATCGTCATGCGGCGCAATCAACAGCAGCCAGCACGCA
CGCGTGTACCTCCAGCTGCGTCTAATCTGCACTATTCACAATATACAATA
CATCGATCATGGATACAGACACAGCTGGCGCAGAGTACGCGCTGCCTGAC
GCAGAGTATGCGTTGCCTGACGCCGAGTATGCGTGGCCTCACTGTCATGA
GCGTGTAGACCTTGTGGACAGCCTCGCAAACTTTGTCCGTAGACGGCCTC
GCAAACATCGCTAATATGGTTTGGTCTCATGTGCAAGTATTCTGAGGTAC
AGCAGTGTACTTGTTATCGTATGTGTGTTTGCCTGCTGCACACCATGCCA
CGAGTTGAAACCAGCAAAGACGGCCTGGCGAGCTTTCGCACCACATTGTG
GACTAGAACAAAAACGGTAACTTCTGCCCGATTTGGTGCATTGACCGGCA
AAAGATGGCGACAGCAGGCAAACTGCGAAACCCGTCTAACTCTACTCTAT
CTTGCGAACAAACTCCTTCGCCTGCCGTACAATTCAGCGACCCATTCTTG
ACCCGCGGCGGACGTGCAAACATGGCATCCGTGGCGGTTACTCCCGAGAA
ACCGGGCGGCGGAGATGGCGGAGAGCAGCATATCAGACAACAACAACAAC
AGCATCAACAACGGCGACGGCGGCGGTTGTGCGTGTGTACCAGAGTGCAC
CAGAACAATGCGCACCGCTCCGTGGACTTGGTCAAGGTGAGGACTATCGG
TGCAAGCCGGAATCAAGCCGTTGGAGGAGGACTAGTCAGCGCTGAACCAT
TTAGACTATGTATACTGTATACTATTGTCAGCGCTGAACCATTATCAGGC
TAGTAGGCGCTGACTCGCTGACTATCCAAAGGGTTTGATTTTTTTCGACT
TTGACACAAGTTTGTGGTGGGCTTCGAGTGCCCCGACACTGCTGTCTTGT
CACTTCCCAGGAGGGTAGCTCCCCTCGCCAGCGCTGTCGTCCATCCAATC
GTTTATTCGCTTCATCTCCCACTGTTCCAGGGTCTCAGACGAGTCGTTCT
GTTACCCACACACGTGCCTCTGACACAAGGCACATACCTAACATTGATGG
GGGCGAGGAGTGCGTCAGTTGCACATCCCATTGCAGCTTATTCGGTCGCC
TTTTCCCGGCCCTTGCCCTCGCCCGCACCAAACACGCCCTCGAGGGCAGC
TCGGAATACTACGAGCATGTATTACGCTTGTCACCCCCTCCCCCTCTTGA
ACCATTCCGTCTCCCTCACCATGTACACGTACGTGCACGAAGGTCTCTGG
CCCAAAAGCATCGTCGACCGTCCACACCCCTGTCCATGCTCCCTTTCTCA
TACACCCAGCGCCTTTTTTCTTTCTGAAACGCCCGATTGCAACCGACACC
CAGGTGCGGGAGTTCCTCGACACGGCCTTGCTCTACGCAGACAGCATTGC
CATCGCCGTAGGAACGCCGCCGCCGTCAGCGGATCAACACGGCACCACAA
CCAGCACCGCCGCCGCCGACTCAACCCCACCGCTATTGCAGTCCATAACT
CTGGCTGCTAGGGAAGCAGAGAGAAAGGCGCCGCCCGACCGCGGCGTCGA
GTCAGTCGGGGAGGAAGGGGGGGGCGAGAGGGGTGCGGCGGGCGTGGTGA
ACGTGTTCGAGGTGACGCCGTGGGGAAAGTTCACGCCGGCGCTGAACGCC
CTGCTGGGATTCGCCTCTCGCGACGGGGCTGACCTTGTCATGTTCCAGGT
ACTCTTGAACACCAACACCCTACCTTACCACTGCCGTCTATTTATTTCCA
ATCTTCGGAAAAAATAATTGTGTACGGTTTCGTTCCTATTTCACAGAAGC
ATGTAGTTCTGGATGAAAGCCCTACCAAACCAACTGCCGCTGTCTGTATT
TTGTGTTCTCTTTTGAAAAATTGTGGAGTATAGGTTGGGATTGCCTCCGC
GCTAATGTCCGTTTTGAGCTAACGACGCCCTTTGCGGAGCGGCAACGAAA
TCGCCGAGGTATGGTGTCTGTCTACCCTTTGTTTTGCGTCAACCAAGCAA
GTACCGCCTTGTGAACACGAAACGAGACGAACAAGTCTCCCCCCGACCCC
CCCCCCCGCCACCACCCCCAAGCTCGCCAATAGAACAGACGCGAGAAATG
AACAAGCGGTCCTGCAGACGCAGCGGCTCAACCTTAGGAAGGGAAACATC
GTATGTTTGTTGTTTTCCATACCAGCATACCATATTTTCTCACCCCTTAT
ACATGACGCATCCTTTTGCACTTTCGACTCCCAGTACACGGGGGTGGCCT
TCCTCCCCTCCCCCCATACCCCCTGACCCCGTTCGCCACGCGATTTGTTC
GTGCCGTGTATACGTGTTTTGTGCCTCGATCGGCGACCAGTCTCTGGAGA
CCACCGTGGGGAAGGACGCCGTATCGGGCATGGAGGCCCACATGGGGCCC
GCAGATCTGGTCGTCGGCGCGGCCCTCACGGGACACGCCTTCCAGGGCGG
GGAAACCGTGGAGCTGACGGGGGTCACGACGCCGTGGAACACGCTGGCGC
TCTGGGACGTGGCCAAGCTTGCCAAGCTAGGGTGCGTCGTCGGTTGGGGA
TGGTCGTTGTATTTCCCTATGTGGGAGGTGCCCCCCGTTTGTGTGTCTTT
GTTGGCCCCTTTGCCCTTTTCGTTGTTCACCGGTACTGCTGTCGTCTCGT
GTCCTCCCCTATGACTGTCTGTTTGCCTCAGTCTCTCGTTCTTTCACCCT
ATCGTCTTCATCTTTGTGCTTGCCTGCCTCCTTCTCTCTCTCTCTCTCTC
CCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCCCCCTGCCTATCTACATATTCCTCACCTA
TTTCTCTCTCTGCCTTCGTTTTTGTCGCTCTCCCATATTCCATTGTCCGC
ACCCATCATCCCCTGCGACCACGTTTTCTTTGTGTCCCCTCTCAACAGGT
TCTTGGGCGTCGCCGAAGGGCTGCTTCCCGGCGTTCCGGCGGGGGTAGAG
GAGGTCACGGCCATCGCAGCGCTGCAGGCGTTACTGGGGGCCGAGCACGC
CCGCGCCAAGCTTGTGCGACTACCGCAGGCGAGTCGTCATCGTCGTCGTC
GTCGTCGTCGTCATCGTCGCTTTCCCAGAGTACTCATTGAGGGTGATTGA
TCATGGCGGATCATTAAGTGGAAGCTCAAGTATTCTTTTCTGTAGCGCCC
CCCTGTTCACTTGCGTGGTCTCCACGAAAACATAACAACGTCTTTGTCGT
GATGAAGCGATATCATGACCGTGCGTGATACACCTGCATACCTCCTTTTG
TATGGTTTCCTTTCACTCTCTGTCTGCTTGAACGGTAGGCATATTTCGTG
ACGTTTTTTGTTTCTGTCCCGAGCACACGTGTGGCGTATATAATAGAGGG
TGTGGGGGGGGCAGGCGCCGTTCGATAGGGCAGTAAATAGGCCAGAGACC
GCAGTCTCACCCACCCGTTTGCAGACACTCTCGCTTTCGTTGTCAGTACT
CGGTGCTACTGCTGTACACCCCGTGATTGTCGAAATAAAAGCAGATGGCG
ATAGGGCCGTGTGCCAGGTGGGGTTGTTGGTGCGCTGGGAACAGAGCATG
GCATGGGCGAATGAGATATGCCGCGTGATCCCAACAAACCCAACGGCTTT
GTTGCTCGGTGAAAGAGGAGATCCAGACACAGGGCCGCTTTGCTTACCAG
CGGAGCCGCGTCGTGTCGATGGTCTTTGTACCCAACCTCCGAGGCCGACA
TTACCGTTACAACGTTCGACGACCACTGTTCACTGTTGTTGACCTTCTTG
ATCCGATGTTCGGCCGCGCACGTTATTCTATGGGCTTATGCTGCCAGGTT
AAAGTTTCAGACGCTTGAACACAGCTCAAATGTTCCCGACACACGCCGTC
CGAAAACGACATCGTGTGCACACGCCTCTGATGCTGTGTGCACACATCGA
CAACGAACGTCTTGCGAGCAGGTGCGGTGGCAGACGGCATGGGAGGACGA
GGGCAGAAGGCGGTGGCACGAGTCGAAGATGTCCAGCAAGCGCGAGAGGG
CCGACAAGCAGATGTCGGCGCTGGGCATCAAAAAGGGTATTGTGGAACAT
CTAGGGTGACGAGCGAGGACTGGAAAGAAAGTTGACGGTGCCTCTGTACC
CGTGGGGCACGGCGAAACGACGGAAAGGACAAGCGGGGTCGCTTGTGGGC
GGACATGGCCGTCTAAGACGGCTTTCATGAGCAGACGCTCGAGCTCGGCG
TCGCGCAGAGAGTCCCATCGGTCCGCTGCAGGGCCTTGCACATAGATTTT
CGTTTGTGTATACAAGGGGTGTATGACGGAAGGAACAGCGTGTAGGGAGG
AAATCATCTGCATGCTCCAGGGGTGGTTGAATTCTTGGTGGTGCTGTTGT
TTCGCGATGGATTCCATTGAACTGACGAACCAACAAACCATGGGAGCTCG
TTGAGCCCACAGAAAACCGTGTCGCCATCAGGTGCCACCGCCGTCTGGCA
GCAGACGGCCGAAGACAAATCGGAGTCACATTGTAACGAATGTGGTCCAG
CGAACTCTCGTCCAGAACTTCCCCATCGTGCCTTCTTTTCGCGGCCGCCA
CGTGACCAGGGGGCGTTGACGTATCCCGTGCGCGCTGTGTAATAGTTTCT
CGCCAA
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Coding sequence (CDS) from alignment at Scaffold_38:70342..75547+

>EsuBft1025_4a-0001 ID=EsuBft1025_4a-0001|Name=EsuBft1025_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1002bp|location=Sequence derived from alignment at Scaffold_38:70342..75547+ (Ectocarpus subulatus male Bft15b)
ATGGCATCCGTGGCGGTTACTCCCGAGAAACCGGGCGGCGGAGATGGCGG
AGAGCAGCATATCAGACAACAACAACAACAGCATCAACAACGGCGACGGC
GGCGGTTGTGCGTGTGTACCAGAGTGCACCAGAACAATGCGCACCGCTCC
GTGGACTTGGTCAAGGTGCGGGAGTTCCTCGACACGGCCTTGCTCTACGC
AGACAGCATTGCCATCGCCGTAGGAACGCCGCCGCCGTCAGCGGATCAAC
ACGGCACCACAACCAGCACCGCCGCCGCCGACTCAACCCCACCGCTATTG
CAGTCCATAACTCTGGCTGCTAGGGAAGCAGAGAGAAAGGCGCCGCCCGA
CCGCGGCGTCGAGTCAGTCGGGGAGGAAGGGGGGGGCGAGAGGGGTGCGG
CGGGCGTGGTGAACGTGTTCGAGGTGACGCCGTGGGGAAAGTTCACGCCG
GCGCTGAACGCCCTGCTGGGATTCGCCTCTCGCGACGGGGCTGACCTTGT
CATGTTCCAGTCTCTGGAGACCACCGTGGGGAAGGACGCCGTATCGGGCA
TGGAGGCCCACATGGGGCCCGCAGATCTGGTCGTCGGCGCGGCCCTCACG
GGACACGCCTTCCAGGGCGGGGAAACCGTGGAGCTGACGGGGGTCACGAC
GCCGTGGAACACGCTGGCGCTCTGGGACGTGGCCAAGCTTGCCAAGCTAG
GGTTCTTGGGCGTCGCCGAAGGGCTGCTTCCCGGCGTTCCGGCGGGGGTA
GAGGAGGTCACGGCCATCGCAGCGCTGCAGGCGTTACTGGGGGCCGAGCA
CGCCCGCGCCAAGCTTGTGCGACTACCGCAGGCGAGTCGTGCGGTGGCAG
ACGGCATGGGAGGACGAGGGCAGAAGGCGGTGGCACGAGTCGAAGATGTC
CAGCAAGCGCGAGAGGGCCGACAAGCAGATGTCGGCGCTGGGCATCAAAA
AGGGTATTGTGGAACATCTAGGGTGACGAGCGAGGACTGGAAAGAAAGTT
GA
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