EsuBft1024_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1024_8a-0001
Unique Name	EsuBft1024_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_308	contig	Scaffold_308:239340..243924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FIA9
ProteomeId	EsuBft1024_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	440
Hectar predicted targeting category	other localisation
Evalue	5.56e-220
EggNOG OGs	2D5KK@1\|root,2SYVY@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_8a	EsuBft1024_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_308 239340..243924 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_8a-0001-exon	agat-exon-8934	Ectocarpus subulatus male Bft15b	exon	Scaffold_308 239340..240363 +
EsuBft1024_8a-0001-exon	EsuBft1024_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_308 240549..243924 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_8a-0001-exon	agat-five_prime_utr-145	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_308 239340..239633 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_8a-0001-cds	EsuBft1024_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_308 239634..240363 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_8a-0001-exon	agat-three_prime_utr-245	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_308 241670..243924 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_8a-0001	EsuBft1024_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_308 239634..241669 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_308:239340..243924+
coding sequence from alignment at Scaffold_308:239340..243924+

spliced messenger RNA

>EsuBft1024_8a-0001 ID=EsuBft1024_8a-0001|Name=EsuBft1024_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4400bp|location=Sequence derived from alignment at Scaffold_308:239340..243924+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGG
GTCGTATCCGAGCTATTCTCCGTCTCACTCGGCCCTGACACGTTTGCACG
AATCGGCTTGGACGAGCGGCAGGAGGTGTCCAATCGTCTCTACAAGACAT
TGACGAAAAGGATCCTTTCGAGCACGATAGAAACGTTGGCACCGATTGCC
CAGCTGCGTGAAGTCGCCATCTTCGACTTCGAATCGCATTTCATCGAGAA
ACAACGCACGGAAAGGGACCGTTGCAGAGAGTTGGCGGTGAAACGTGCAC
CAGCAGTCAGGGCGGCGGTGGACTGCTTGAGACAGAGCACGGCATTTAAA
GGCGACGATGGCAAAGACAAGGTCGTGGGGTTGGACGGGAGAGTGTTTCC
GCCGGTCAAGTGGCAAGAGATTCTCGACTCGCCCGCTAAGGCTCTTGCGA
AAATGCGCGAGTGTGTCCTGTACTACGTCTTCAAGAAGAAAAAACTCAAC
GGCGCAAAACTCAAGGGCGCGATCAAGAAGAAGGTTTTCTCCATCCCGGC
TAGGAACAGCATCAACAAGGCCACGAAAAGTCAAGGGAGGTCGTCTGCAC
TCAAGGATTCCGTCGGCAATGCCTTCGCTGGGGGGCAAGAGTGGAAGGCC
CTCACGCTGAACATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGAC
GCAAGCCAAGATGCTGGAAATGGTGGCTTCCATAGGAGCGGCCACGCCGT
ACAGCATGGCCAACGCGACGGGAGGAGCCAAGCACGCCAACAAGGCGGCA
GGTCCAGGGAAATGGGTCAGAGAGCATTGTGCCGACGGGTTCGCAGACGA
CCCGTTTTACGACGCCGACGCTCATGGCGTGGATCTTCCCGTGTCAATCC
ACCAAGGGGTGCACCCGGAATATCTCGAGAAGGGAACTGCGGGAATAATC
GACTACTTCAAGAGGCAGCTGTTGTCGACGTGGCTGCAGTCAACCGAGCT
ACTCCTGGTGTGCTACGACCGACAGGAACTGGTGCCGGTAATCAAAGGAC
AAGAGCAGCTTGGGAGGACCGAGAAACTTGGAGAGTGCTCTCGGACCTTC
GACCCGAAGTCAACGGACCCTGTTCCTTCGTTACAGTATGGACCATGGCT
TCGAGCCGATGGCAAGGCGGCGCGGGACGGAATCGCCGCCAACCTCGCCA
TGCGCGTGCTAGCTGATGAAGTCTGGACCGGCGACACCAAGCCGAACGGA
ATCGTCGCATTCTATGGCGTCGGAGGTGAGCCTGGTCTGAGAGCTGATCA
TCCAGCTGGTGTAGATGCGGAGGGCGTAGGCCTTGAGATGGGAGGGGTAG
GTGCCACGGAGGCGCTTTCCGGAACCGAACCACTCCTTCACTTTCGAAAC
GGAAACGACCCGATACTCGGCGTCGAGCGGCAGCGAGGGCCAGACATCGG
CGAGGCGGAGCTCTCCGTGATACACTTCATCGTTTGGGCGAAGAGGTACT
GGGGGAAAAACTTCCACAAGTGGATCGTTTCATCGGTAGACACGGACCTA
TGGATGATCATTCTACTGGCGATGACCACTGGTTGGCTCCGGCCTCGTGG
CGAGGGGGCGGTTGACGTGACCGTCCAGAAGGTCGTGGGTGGCGAGACCA
AGTTCCTGTGGATGAACAGAGTGTTCGCCAGCATCTGCGAGCTCCAGGAC
GGAAGCGAGTCCGCGTGGCCGCCATTGACCTTCAGGGGATGGATTCCCAC
GGACAATGACAAGGTCCGTCTGTTCGTCCTAACGTTCCTGGAGTCGGGCT
GTGACTACCTCCCGGCAATTTCCGGGCTGCCGTTCGACAAGATGTGGGTA
CTGGCCCTCAAGAGCGTGCGGACGGAGGGATTGTTTGACANNNNNNNNNN
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NNNTTTATTGGTGTGGTATTTTGTTCTCCGCGTTTTTCCGGCAGACTGCC
GGAAACCTATTGTTGGGGTGCTGTGTGCGTTGGCCCGGTATTGTGTGCGG
TGTTCGTGTGTAAGTATTTCCGGTGTTTTCGCCACACCCAATGCTCAGGG
CGTCCTCATGTACATCGAGACAAGTACTTCAATGTGTACATATGTATATA
TGCCGGCCGTGCCTGCATGCGACACCCCAAAGCACGACGTTATCAGTGGC
CAAACTCATTGTTACTGTAGGTGCCGTGCTACCGCCTCTATTCGACCATT
CTTGCATTTGCACTGCTAGGTGAGGGTCCCGACTCCAACAGGCACAAGCG
TGTGCGGTGCAACAACAACAGAGGGGCACCACCAACAGCAATTTCAGTCC
AAACCTAGCTAACGCCATTCAAGAGTACTCCACCTATAGTTGGTATTGCA
GCACAATTCTAAGTGCTATACAATTACAAGATCAGCAGCTAGCATAATCG
ATGCTTGGTGTTGCCGGCAACGTGTCAGGGCATAAGCACGGTGCCTGTAT

protein sequence of EsuBft1024_8a-0001

>EsuBft1024_8 ID=EsuBft1024_8|Name=EsuBft1024_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=617bp
MRVVSELFSVSLGPDTFARIGLDERQEVSNRLYKTLTKRILSSTIETLAP
IAQLREVAIFDFESHFIEKQRTERDRCRELAVKRAPAVRAAVDCLRQSTA
FKGDDGKDKVVGLDGRVFPPVKWQEILDSPAKALAKMRECVLYYVFKKKK
LNGAKLKGAIKKKVFSIPARNSINKATKSQGRSSALKDSVGNAFAGGQEW
KALTLNMFDAAREGGGVVTQAKMLEMVASIGAATPYSMANATGGAKHANK
AAGPGKWVREHCADGFADDPFYDADAHGVDLPVSIHQGVHPEYLEKGTAG
IIDYFKRQLLSTWLQSTELLLVCYDRQELVPVIKGQEQLGRTEKLGECSR
TFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDTKP
NGIVAFYGVGGEPGLRADHPAGVDAEGVGLEMGGVGATEALSGTEPLLHF
RNGNDPILGVERQRGPDIGEAELSVIHFIVWAKRYWGKNFHKWIVSSVDT
DLWMIILLAMTTGWLRPRGEGAVDVTVQKVVGGETKFLWMNRVFASICEL
QDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCDYLPAISGLPFDKM
WVLALKSVRTEGLFDXX

mRNA from alignment at Scaffold_308:239340..243924+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1024_8a-0001 ID=EsuBft1024_8a-0001|Name=EsuBft1024_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4585bp|location=Sequence derived from alignment at Scaffold_308:239340..243924+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGG
GTCGTATCCGAGCTATTCTCCGTCTCACTCGGCCCTGACACGTTTGCACG
AATCGGCTTGGACGAGCGGCAGGAGGTGTCCAATCGTCTCTACAAGACAT
TGACGAAAAGGATCCTTTCGAGCACGATAGAAACGTTGGCACCGATTGCC
CAGCTGCGTGAAGTCGCCATCTTCGACTTCGAATCGCATTTCATCGAGAA
ACAACGCACGGAAAGGGACCGTTGCAGAGAGTTGGCGGTGAAACGTGCAC
CAGCAGTCAGGGCGGCGGTGGACTGCTTGAGACAGAGCACGGCATTTAAA
GGCGACGATGGCAAAGACAAGGTCGTGGGGTTGGACGGGAGAGTGTTTCC
GCCGGTCAAGTGGCAAGAGATTCTCGACTCGCCCGCTAAGGCTCTTGCGA
AAATGCGCGAGTGTGTCCTGTACTACGTCTTCAAGAAGAAAAAACTCAAC
GGCGCAAAACTCAAGGGCGCGATCAAGAAGAAGGTTTTCTCCATCCCGGC
TAGGAACAGCATCAACAAGGCCACGAAAAGTCAAGGGAGGTCGTCTGCAC
TCAAGGATTCCGTCGGCAATGCCTTCGCTGGGGGGCAAGAGTGGAAGGCC
CTCACGCTGAACATGTTCGATGCGGCCAGAGAAGGTGGGGGTGTGGTGAC
GCAAGCCAAGATGCTGGAAATGGTGGCTTCCATAGGAGCGGCCACGCCGT
ACAGCATGGCCAACGCGACGGGAGGTGGAAGAGAGCGTGCGCACTACAGG
CTGTTTTCTCGTGCTTTCGCTACCAGACGAAGCTCACCCACTCTCCACAA
CCGTGTGTCTGAGTATTATTAGCATAATGCGTACTGAATCACATTGTGCT
CACCCCCACCCCCCCATCCCCAAACACCCCTGTTGGAAATCTCTCCCCAA
ACGTATCAGGAGCCAAGCACGCCAACAAGGCGGCAGGTCCAGGGAAATGG
GTCAGAGAGCATTGTGCCGACGGGTTCGCAGACGACCCGTTTTACGACGC
CGACGCTCATGGCGTGGATCTTCCCGTGTCAATCCACCAAGGGGTGCACC
CGGAATATCTCGAGAAGGGAACTGCGGGAATAATCGACTACTTCAAGAGG
CAGCTGTTGTCGACGTGGCTGCAGTCAACCGAGCTACTCCTGGTGTGCTA
CGACCGACAGGAACTGGTGCCGGTAATCAAAGGACAAGAGCAGCTTGGGA
GGACCGAGAAACTTGGAGAGTGCTCTCGGACCTTCGACCCGAAGTCAACG
GACCCTGTTCCTTCGTTACAGTATGGACCATGGCTTCGAGCCGATGGCAA
GGCGGCGCGGGACGGAATCGCCGCCAACCTCGCCATGCGCGTGCTAGCTG
ATGAAGTCTGGACCGGCGACACCAAGCCGAACGGAATCGTCGCATTCTAT
GGCGTCGGAGGTGAGCCTGGTCTGAGAGCTGATCATCCAGCTGGTGTAGA
TGCGGAGGGCGTAGGCCTTGAGATGGGAGGGGTAGGTGCCACGGAGGCGC
TTTCCGGAACCGAACCACTCCTTCACTTTCGAAACGGAAACGACCCGATA
CTCGGCGTCGAGCGGCAGCGAGGGCCAGACATCGGCGAGGCGGAGCTCTC
CGTGATACACTTCATCGTTTGGGCGAAGAGGTACTGGGGGAAAAACTTCC
ACAAGTGGATCGTTTCATCGGTAGACACGGACCTATGGATGATCATTCTA
CTGGCGATGACCACTGGTTGGCTCCGGCCTCGTGGCGAGGGGGCGGTTGA
CGTGACCGTCCAGAAGGTCGTGGGTGGCGAGACCAAGTTCCTGTGGATGA
ACAGAGTGTTCGCCAGCATCTGCGAGCTCCAGGACGGAAGCGAGTCCGCG
TGGCCGCCATTGACCTTCAGGGGATGGATTCCCACGGACAATGACAAGGT
CCGTCTGTTCGTCCTAACGTTCCTGGAGTCGGGCTGTGACTACCTCCCGG
CAATTTCCGGGCTGCCGTTCGACAAGATGTGGGTACTGGCCCTCAAGAGC
GTGCGGACGGAGGGATTGTTTGACANNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATTGGTGTG
GTATTTTGTTCTCCGCGTTTTTCCGGCAGACTGCCGGAAACCTATTGTTG
GGGTGCTGTGTGCGTTGGCCCGGTATTGTGTGCGGTGTTCGTGTGTAAGT
ATTTCCGGTGTTTTCGCCACACCCAATGCTCAGGGCGTCCTCATGTACAT
CGAGACAAGTACTTCAATGTGTACATATGTATATATGCCGGCCGTGCCTG
CATGCGACACCCCAAAGCACGACGTTATCAGTGGCCAAACTCATTGTTAC
TGTAGGTGCCGTGCTACCGCCTCTATTCGACCATTCTTGCATTTGCACTG
CTAGGTGAGGGTCCCGACTCCAACAGGCACAAGCGTGTGCGGTGCAACAA
CAACAGAGGGGCACCACCAACAGCAATTTCAGTCCAAACCTAGCTAACGC
CATTCAAGAGTACTCCACCTATAGTTGGTATTGCAGCACAATTCTAAGTG
CTATACAATTACAAGATCAGCAGCTAGCATAATCGATGCTTGGTGTTGCC
GGCAACGTGTCAGGGCATAAGCACGGTGCCTGTAT

Coding sequence (CDS) from alignment at Scaffold_308:239340..243924+

>EsuBft1024_8a-0001 ID=EsuBft1024_8a-0001|Name=EsuBft1024_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1851bp|location=Sequence derived from alignment at Scaffold_308:239340..243924+ (Ectocarpus subulatus male Bft15b)
ATGAGGGTCGTATCCGAGCTATTCTCCGTCTCACTCGGCCCTGACACGTT
TGCACGAATCGGCTTGGACGAGCGGCAGGAGGTGTCCAATCGTCTCTACA
AGACATTGACGAAAAGGATCCTTTCGAGCACGATAGAAACGTTGGCACCG
ATTGCCCAGCTGCGTGAAGTCGCCATCTTCGACTTCGAATCGCATTTCAT
CGAGAAACAACGCACGGAAAGGGACCGTTGCAGAGAGTTGGCGGTGAAAC
GTGCACCAGCAGTCAGGGCGGCGGTGGACTGCTTGAGACAGAGCACGGCA
TTTAAAGGCGACGATGGCAAAGACAAGGTCGTGGGGTTGGACGGGAGAGT
GTTTCCGCCGGTCAAGTGGCAAGAGATTCTCGACTCGCCCGCTAAGGCTC
TTGCGAAAATGCGCGAGTGTGTCCTGTACTACGTCTTCAAGAAGAAAAAA
CTCAACGGCGCAAAACTCAAGGGCGCGATCAAGAAGAAGGTTTTCTCCAT
CCCGGCTAGGAACAGCATCAACAAGGCCACGAAAAGTCAAGGGAGGTCGT
CTGCACTCAAGGATTCCGTCGGCAATGCCTTCGCTGGGGGGCAAGAGTGG
AAGGCCCTCACGCTGAACATGTTCGATGCGGCCAGAGAAGGTGGGGGTGT
GGTGACGCAAGCCAAGATGCTGGAAATGGTGGCTTCCATAGGAGCGGCCA
CGCCGTACAGCATGGCCAACGCGACGGGAGGAGCCAAGCACGCCAACAAG
GCGGCAGGTCCAGGGAAATGGGTCAGAGAGCATTGTGCCGACGGGTTCGC
AGACGACCCGTTTTACGACGCCGACGCTCATGGCGTGGATCTTCCCGTGT
CAATCCACCAAGGGGTGCACCCGGAATATCTCGAGAAGGGAACTGCGGGA
ATAATCGACTACTTCAAGAGGCAGCTGTTGTCGACGTGGCTGCAGTCAAC
CGAGCTACTCCTGGTGTGCTACGACCGACAGGAACTGGTGCCGGTAATCA
AAGGACAAGAGCAGCTTGGGAGGACCGAGAAACTTGGAGAGTGCTCTCGG
ACCTTCGACCCGAAGTCAACGGACCCTGTTCCTTCGTTACAGTATGGACC
ATGGCTTCGAGCCGATGGCAAGGCGGCGCGGGACGGAATCGCCGCCAACC
TCGCCATGCGCGTGCTAGCTGATGAAGTCTGGACCGGCGACACCAAGCCG
AACGGAATCGTCGCATTCTATGGCGTCGGAGGTGAGCCTGGTCTGAGAGC
TGATCATCCAGCTGGTGTAGATGCGGAGGGCGTAGGCCTTGAGATGGGAG
GGGTAGGTGCCACGGAGGCGCTTTCCGGAACCGAACCACTCCTTCACTTT
CGAAACGGAAACGACCCGATACTCGGCGTCGAGCGGCAGCGAGGGCCAGA
CATCGGCGAGGCGGAGCTCTCCGTGATACACTTCATCGTTTGGGCGAAGA
GGTACTGGGGGAAAAACTTCCACAAGTGGATCGTTTCATCGGTAGACACG
GACCTATGGATGATCATTCTACTGGCGATGACCACTGGTTGGCTCCGGCC
TCGTGGCGAGGGGGCGGTTGACGTGACCGTCCAGAAGGTCGTGGGTGGCG
AGACCAAGTTCCTGTGGATGAACAGAGTGTTCGCCAGCATCTGCGAGCTC
CAGGACGGAAGCGAGTCCGCGTGGCCGCCATTGACCTTCAGGGGATGGAT
TCCCACGGACAATGACAAGGTCCGTCTGTTCGTCCTAACGTTCCTGGAGT
CGGGCTGTGACTACCTCCCGGCAATTTCCGGGCTGCCGTTCGACAAGATG
TGGGTACTGGCCCTCAAGAGCGTGCGGACGGAGGGATTGTTTGACANNNN
N