EsuBft1024_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1024_4a-0001
Unique NameEsuBft1024_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_308contigScaffold_308:280031..281083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog13735.ENSPSIP00000001213
ProteomeIdEsuBft1024_4
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length105
Hectar predicted targeting categoryother localisation
Evalue1.23e-16
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1024_4aEsuBft1024_4aEctocarpus subulatus male Bft15bgeneScaffold_308 280031..281083 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1024_4a-0001-exonEsuBft1024_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_308 280031..281083 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1024_4a-0001-exonagat-three_prime_utr-241Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_308 280031..280625 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1024_4a-0001-cdsEsuBft1024_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_308 280626..280904 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1024_4a-0001-exonagat-five_prime_utr-142Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_308 280905..281083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1024_4a-0001EsuBft1024_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_308 280626..280904 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1024_4a-0001 ID=EsuBft1024_4a-0001|Name=EsuBft1024_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1053bp|location=Sequence derived from alignment at Scaffold_308:280031..281083- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGATT
TCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCGCCTTTTGCGAAGCCAACAACATCCCCCCGAAGGAATAGTGCG
GATTTCGAACCGGGCGATCCACTGTCGATATGCAGTTCATCGTGCGCCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGT
CGACTTGAAGAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGG
TGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAA
TTCCACGATGGAATGCAGGCCCGGGTGAGCATGGACGACGGAGAACTATC
GGACTGGTTCTTCGTGCACAGGGCCTGCGACAAGAGTGTGTGCTTTCCCC
ACTGCTGATCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGCTGTCATCC
GATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAG
GGGAAGACGGAAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGCCTTCACC
GCTGACCATCGAAGCCGCGAGACAGAAATACGCCCAGACGACCGAGTTCC
GGTACCTCGGTGGCCTCTTCAACGAACATGGCGACCTCACCCGGGAGATC
AACTACAGGAGCAGAGGAGCGTGAGCGTGCCTCAGGCGACATGGCCGGGA
GCTCTTCGACAGACCGAAAGCGCCATTCCGACTCAAGATCCGCCTGCTCC
AGGCGGAGGCGATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCA
CTC
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protein sequence of EsuBft1024_4a-0001

>EsuBft1024_4 ID=EsuBft1024_4|Name=EsuBft1024_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=92bp
MQFIVRRLQELGRRKKIPLYMCFVDLKKAYDSVDREMLWKVLARAGIPAK
LIEVIRQFHDGMQARVSMDDGELSDWFFVHRACDKSVCFPHC
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mRNA from alignment at Scaffold_308:280031..281083-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1024_4a-0001 ID=EsuBft1024_4a-0001|Name=EsuBft1024_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1053bp|location=Sequence derived from alignment at Scaffold_308:280031..281083- (Ectocarpus subulatus male Bft15b)
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGATT
TCGCTACTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCGCCTTTTGCGAAGCCAACAACATCCCCCCGAAGGAATAGTGCG
GATTTCGAACCGGGCGATCCACTGTCGATATGCAGTTCATCGTGCGCCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGT
CGACTTGAAGAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGG
TGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAA
TTCCACGATGGAATGCAGGCCCGGGTGAGCATGGACGACGGAGAACTATC
GGACTGGTTCTTCGTGCACAGGGCCTGCGACAAGAGTGTGTGCTTTCCCC
ACTGCTGATCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGCTGTCATCC
GATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAG
GGGAAGACGGAAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGCCTTCACC
GCTGACCATCGAAGCCGCGAGACAGAAATACGCCCAGACGACCGAGTTCC
GGTACCTCGGTGGCCTCTTCAACGAACATGGCGACCTCACCCGGGAGATC
AACTACAGGAGCAGAGGAGCGTGAGCGTGCCTCAGGCGACATGGCCGGGA
GCTCTTCGACAGACCGAAAGCGCCATTCCGACTCAAGATCCGCCTGCTCC
AGGCGGAGGCGATGGAGGCACTGCTGTACGGCTGCATGACATGGTCACCA
CTC
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Coding sequence (CDS) from alignment at Scaffold_308:280031..281083-

>EsuBft1024_4a-0001 ID=EsuBft1024_4a-0001|Name=EsuBft1024_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=279bp|location=Sequence derived from alignment at Scaffold_308:280031..281083- (Ectocarpus subulatus male Bft15b)
ATGCAGTTCATCGTGCGCCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAAT
ACCGCTCTACATGTGCTTCGTCGACTTGAAGAAGGCGTATGATTCGGTGG
ACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAG
CTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCAGGCCCGGGTGAG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGCACAGGGCCTGCG
ACAAGAGTGTGTGCTTTCCCCACTGCTGA
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