EsuBft1024_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1024_3a-0001
Unique Name	EsuBft1024_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_308	contig	Scaffold_308:306107..307609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1024_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	150
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_3a	EsuBft1024_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_308 306107..307609 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_3a-0001-exon	EsuBft1024_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_308 306107..307609 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_3a-0001-cds	EsuBft1024_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_308 306107..307609 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1024_3a-0001	EsuBft1024_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_308 306107..307609 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_308:306107..307609-
coding sequence from alignment at Scaffold_308:306107..307609-

spliced messenger RNA

>EsuBft1024_3a-0001 ID=EsuBft1024_3a-0001|Name=EsuBft1024_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1503bp|location=Sequence derived from alignment at Scaffold_308:306107..307609- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAAGAGGATCGCAGGAGACAAGCCGTGTCCAGTCTACGGCGGCCC
TTCTTCCGGCCCTCTTACCATCGCCAACTCCGCTGTCATGNACCCTTTTA
CCATCGCCAACTCCGCTGTCATGCTGCTGGATAAGGTTATGAGTGTGCTT
CACAACGTCGAGTCGGGTAAAATGCGTTTGGAACCAGACGTGTACGTTGA
CGGGCGCTACGTTACTTTCGCCGATGAATTCACCCCTCGTCGCGTAGAGC
TTATCTCCGATTTCGTCCAGGAATACTTGTCAGTTAGCCAACAAATCGCC
AATGCTGACCATGTCCACGTGTACCTCATTACTGGCGAAGTCATCACGAA
GCCTCATCGCGAGGTCACAGCCACCGATTGGTTGCGTCTGTATGTACGGG
AACACGCGTTGACTGGGGGTGCGGCAGAGCTAGCTCGTTCGGCTTTCTCG
GCGTTGACGTTGACTCCGGGGGAAGGGTGGTCTGCAGCGGCCGCCCGTGT
ACTTTCAGTATTCCGCGCGACGCGTGCCGATCCCGAGCGACCGTACATGA
CCGAGCAGGCTTTGTTTTGGCGTTTCGCGACCCCGGTAGCGCTAATCGAA
CTTTATGACCGGGTTGTCGAGGTCTTACTACCTAACCCATTCGACCGAAA
CGGAGTATCCGCGATCCTACACGAGACAGCGTACGAGACAACTTCCTCTC
TCGGTCCTTTGCGTATGGAGTGGCACGACCCCTTGGGGGAAGCGATGGCA
CGACGGGGTGTGACAGCAGAAAAGTTGTTTCGCAAGTTCGTTGGCGTGCT
ATCGGCGCGCAATGCGTCGTACATCACGCCGCCGCCGCCGCGTAAACATT
TAAAGGTAGCGGGTCCCGACCGTCTTTTTACGATGGCGGAGGCACGGTCG
CTGTTCGCTAACTCGGGGACCGGCGCGCCCTCGGCGTTGCCACCCCCCGT
GCTGACTCAACCTTTCTCTGCTCTAGCGCCTGCCCCCGTACCAGCGCCGC
CCGTAGCACCACAGGTCGCGGCGTATCAGAACCGGACCGCCACGGCTCCC
GGAGGCCATGGCGTGCCGTTTGAAGCCCGTTCGTCAGCGCACCGGCCGGC
CCCGGCCCCCTCTGCACCGGCCGCGGGTACCGCATCAGCCCCTGCTCTGA
CCACCTCCACGCCGAGCGACACCCGACCGCCACCGTCCGCGTCGCGGACC
GAGATCATCGACTACTTGCGCTCGCACGACGTGTGCTACCGCCATGCCTT
CTCGGGCACCTGCCGGCGCTCCCCGTGCAGGTGGAACCATGCGCTTGTCC
CACCGGCCCTGTACAAGGAGGTCTCGTCGCGGCAAGGAGCTGGCCGAGGC
AAGCATCGCGTAGCGTCGCCATCACCGGGCCAATACAGCTTGATGTGCGA
GTTCGGGATCTTGTCGGAGGGGAGCGACGACGACCAGGCCGAAGGGGGCG
CCGCTTCAAGGAGTGGAAGGTCTCCGGTCGTGGATACGGTATTCGCTTGT
TGA

protein sequence of EsuBft1024_3a-0001

>EsuBft1024_3 ID=EsuBft1024_3|Name=EsuBft1024_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=500bp
MRKRIAGDKPCPVYGGPSSGPLTIANSAVMXPFTIANSAVMLLDKVMSVL
HNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDFVQEYLSVSQQIA
NADHVHVYLITGEVITKPHREVTATDWLRLYVREHALTGGAAELARSAFS
ALTLTPGEGWSAAAARVLSVFRATRADPERPYMTEQALFWRFATPVALIE
LYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMA
RRGVTAEKLFRKFVGVLSARNASYITPPPPRKHLKVAGPDRLFTMAEARS
LFANSGTGAPSALPPPVLTQPFSALAPAPVPAPPVAPQVAAYQNRTATAP
GGHGVPFEARSSAHRPAPAPSAPAAGTASAPALTTSTPSDTRPPPSASRT
EIIDYLRSHDVCYRHAFSGTCRRSPCRWNHALVPPALYKEVSSRQGAGRG
KHRVASPSPGQYSLMCEFGILSEGSDDDQAEGGAASRSGRSPVVDTVFAC

mRNA from alignment at Scaffold_308:306107..307609-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1024_3a-0001 ID=EsuBft1024_3a-0001|Name=EsuBft1024_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1503bp|location=Sequence derived from alignment at Scaffold_308:306107..307609- (Ectocarpus subulatus male Bft15b)
ATGCGTAAGAGGATCGCAGGAGACAAGCCGTGTCCAGTCTACGGCGGCCC
TTCTTCCGGCCCTCTTACCATCGCCAACTCCGCTGTCATGNACCCTTTTA
CCATCGCCAACTCCGCTGTCATGCTGCTGGATAAGGTTATGAGTGTGCTT
CACAACGTCGAGTCGGGTAAAATGCGTTTGGAACCAGACGTGTACGTTGA
CGGGCGCTACGTTACTTTCGCCGATGAATTCACCCCTCGTCGCGTAGAGC
TTATCTCCGATTTCGTCCAGGAATACTTGTCAGTTAGCCAACAAATCGCC
AATGCTGACCATGTCCACGTGTACCTCATTACTGGCGAAGTCATCACGAA
GCCTCATCGCGAGGTCACAGCCACCGATTGGTTGCGTCTGTATGTACGGG
AACACGCGTTGACTGGGGGTGCGGCAGAGCTAGCTCGTTCGGCTTTCTCG
GCGTTGACGTTGACTCCGGGGGAAGGGTGGTCTGCAGCGGCCGCCCGTGT
ACTTTCAGTATTCCGCGCGACGCGTGCCGATCCCGAGCGACCGTACATGA
CCGAGCAGGCTTTGTTTTGGCGTTTCGCGACCCCGGTAGCGCTAATCGAA
CTTTATGACCGGGTTGTCGAGGTCTTACTACCTAACCCATTCGACCGAAA
CGGAGTATCCGCGATCCTACACGAGACAGCGTACGAGACAACTTCCTCTC
TCGGTCCTTTGCGTATGGAGTGGCACGACCCCTTGGGGGAAGCGATGGCA
CGACGGGGTGTGACAGCAGAAAAGTTGTTTCGCAAGTTCGTTGGCGTGCT
ATCGGCGCGCAATGCGTCGTACATCACGCCGCCGCCGCCGCGTAAACATT
TAAAGGTAGCGGGTCCCGACCGTCTTTTTACGATGGCGGAGGCACGGTCG
CTGTTCGCTAACTCGGGGACCGGCGCGCCCTCGGCGTTGCCACCCCCCGT
GCTGACTCAACCTTTCTCTGCTCTAGCGCCTGCCCCCGTACCAGCGCCGC
CCGTAGCACCACAGGTCGCGGCGTATCAGAACCGGACCGCCACGGCTCCC
GGAGGCCATGGCGTGCCGTTTGAAGCCCGTTCGTCAGCGCACCGGCCGGC
CCCGGCCCCCTCTGCACCGGCCGCGGGTACCGCATCAGCCCCTGCTCTGA
CCACCTCCACGCCGAGCGACACCCGACCGCCACCGTCCGCGTCGCGGACC
GAGATCATCGACTACTTGCGCTCGCACGACGTGTGCTACCGCCATGCCTT
CTCGGGCACCTGCCGGCGCTCCCCGTGCAGGTGGAACCATGCGCTTGTCC
CACCGGCCCTGTACAAGGAGGTCTCGTCGCGGCAAGGAGCTGGCCGAGGC
AAGCATCGCGTAGCGTCGCCATCACCGGGCCAATACAGCTTGATGTGCGA
GTTCGGGATCTTGTCGGAGGGGAGCGACGACGACCAGGCCGAAGGGGGCG
CCGCTTCAAGGAGTGGAAGGTCTCCGGTCGTGGATACGGTATTCGCTTGT
TGA

Coding sequence (CDS) from alignment at Scaffold_308:306107..307609-

>EsuBft1024_3a-0001 ID=EsuBft1024_3a-0001|Name=EsuBft1024_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1503bp|location=Sequence derived from alignment at Scaffold_308:306107..307609- (Ectocarpus subulatus male Bft15b)
ATGCGTAAGAGGATCGCAGGAGACAAGCCGTGTCCAGTCTACGGCGGCCC
TTCTTCCGGCCCTCTTACCATCGCCAACTCCGCTGTCATGNACCCTTTTA
CCATCGCCAACTCCGCTGTCATGCTGCTGGATAAGGTTATGAGTGTGCTT
CACAACGTCGAGTCGGGTAAAATGCGTTTGGAACCAGACGTGTACGTTGA
CGGGCGCTACGTTACTTTCGCCGATGAATTCACCCCTCGTCGCGTAGAGC
TTATCTCCGATTTCGTCCAGGAATACTTGTCAGTTAGCCAACAAATCGCC
AATGCTGACCATGTCCACGTGTACCTCATTACTGGCGAAGTCATCACGAA
GCCTCATCGCGAGGTCACAGCCACCGATTGGTTGCGTCTGTATGTACGGG
AACACGCGTTGACTGGGGGTGCGGCAGAGCTAGCTCGTTCGGCTTTCTCG
GCGTTGACGTTGACTCCGGGGGAAGGGTGGTCTGCAGCGGCCGCCCGTGT
ACTTTCAGTATTCCGCGCGACGCGTGCCGATCCCGAGCGACCGTACATGA
CCGAGCAGGCTTTGTTTTGGCGTTTCGCGACCCCGGTAGCGCTAATCGAA
CTTTATGACCGGGTTGTCGAGGTCTTACTACCTAACCCATTCGACCGAAA
CGGAGTATCCGCGATCCTACACGAGACAGCGTACGAGACAACTTCCTCTC
TCGGTCCTTTGCGTATGGAGTGGCACGACCCCTTGGGGGAAGCGATGGCA
CGACGGGGTGTGACAGCAGAAAAGTTGTTTCGCAAGTTCGTTGGCGTGCT
ATCGGCGCGCAATGCGTCGTACATCACGCCGCCGCCGCCGCGTAAACATT
TAAAGGTAGCGGGTCCCGACCGTCTTTTTACGATGGCGGAGGCACGGTCG
CTGTTCGCTAACTCGGGGACCGGCGCGCCCTCGGCGTTGCCACCCCCCGT
GCTGACTCAACCTTTCTCTGCTCTAGCGCCTGCCCCCGTACCAGCGCCGC
CCGTAGCACCACAGGTCGCGGCGTATCAGAACCGGACCGCCACGGCTCCC
GGAGGCCATGGCGTGCCGTTTGAAGCCCGTTCGTCAGCGCACCGGCCGGC
CCCGGCCCCCTCTGCACCGGCCGCGGGTACCGCATCAGCCCCTGCTCTGA
CCACCTCCACGCCGAGCGACACCCGACCGCCACCGTCCGCGTCGCGGACC
GAGATCATCGACTACTTGCGCTCGCACGACGTGTGCTACCGCCATGCCTT
CTCGGGCACCTGCCGGCGCTCCCCGTGCAGGTGGAACCATGCGCTTGTCC
CACCGGCCCTGTACAAGGAGGTCTCGTCGCGGCAAGGAGCTGGCCGAGGC
AAGCATCGCGTAGCGTCGCCATCACCGGGCCAATACAGCTTGATGTGCGA
GTTCGGGATCTTGTCGGAGGGGAGCGACGACGACCAGGCCGAAGGGGGCG
CCGCTTCAAGGAGTGGAAGGTCTCCGGTCGTGGATACGGTATTCGCTTGT
TGA