EsuBft1023_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1023_2a-0001
Unique NameEsuBft1023_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_132contigScaffold_132:144781..149747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0SID8
ProteomeIdEsuBft1023_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length186
Hectar predicted targeting categoryother localisation
Evalue7.15e-06
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnuclease activity
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_2aEsuBft1023_2aEctocarpus subulatus male Bft15bgeneScaffold_132 144781..149747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_2a-0001EsuBft1023_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_132 145990..149353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_2a-0001-exonagat-exon-33111Ectocarpus subulatus male Bft15bexonScaffold_132 144781..145126 -
EsuBft1023_2a-0001-exonagat-exon-33113Ectocarpus subulatus male Bft15bexonScaffold_132 145343..145529 -
EsuBft1023_2a-0001-exonEsuBft1023_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_132 145660..146394 -
EsuBft1023_2a-0001-exonagat-exon-33110Ectocarpus subulatus male Bft15bexonScaffold_132 149061..149212 -
EsuBft1023_2a-0001-exonagat-exon-33112Ectocarpus subulatus male Bft15bexonScaffold_132 149305..149747 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_2a-0001-exonagat-three_prime_utr-233Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_132 144781..145126 -
EsuBft1023_2a-0001-exonagat-three_prime_utr-234Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_132 145343..145529 -
EsuBft1023_2a-0001-exonagat-three_prime_utr-235Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_132 145660..145989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_2a-0001-cdsEsuBft1023_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_132 145990..146394 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1023_2a-0001-exonagat-five_prime_utr-136Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_132 149354..149747 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1023_2a-0001 ID=EsuBft1023_2a-0001|Name=EsuBft1023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1863bp|location=Sequence derived from alignment at Scaffold_132:144781..149747- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCATACCCACACACCAACAAATTACACCCACAAGGGGTAAATAGGGATTG
TCACTAGACGTCAACGGCCGTTTCTTATTTTCACGCTCTCTGCTCTCTCT
ACTGCACTTCGTTTCTTATGGTTTGGAGTGATCCTGCTCTCAGTTTCTTA
TTGGGGTGTTTCTTACTTCGTTCCCAAGATTGAGCTGTGTTTCTTAGCCG
GAGTTTTTCATTTTTCACCGAAATTTGAGCAAGATTTTCCTACTTAGATT
TTTTTTTACTTGCGGGCGCGTTCTGTACGTTGGACATCGACGAACATGTG
AAAAAAAACGGCCTCTCTTTCTGTGGGAAGGGGCGCACGATGAACCCTTG
GACTGCTGTTCATGAACCAGCTGAAGTGCACACGCGCTTAAAGAATGCAC
CACCTGTTTCCCGACTCAAATGATCTGCGACGCGGATTACATCGCGACTA
CTATGTCGTGGGAGATTCGGCTTACGGGGCAACGGACAAGATGCTTGCAC
CGTACCCAGGATGCGACCTCAACGCAGACCAAGACGCCTTCAACTTCTTC
CAGTCGCAAGGGCGCATATGCATCGAGCAGACCTTCGGGATCATGGCGAC
TTTGGTAGCTGAAAATGGGAAGGACTTGATACAGAGGGCGTCTCAGCAGC
GGTACGACAGCGTCGTTCAACGCGGGGACGTTGCCGCGCTGAGCCGCAGC
CGCGACGTCGCGCACGCAGCCGCGGCCAAAGCGCGTGAAAGTAAAAACAA
GGCGATGGCAGCCAAACGTAGTGCGGAAAAAGCAGCGGAGGAGGCGAAAA
AAGTTGCGGAGGAGCAGCAGCGGCTGGGAGACTTGGCAACCGCTGCGGCG
GAAGCCGAACGCGCGAGCAGGGTGAGGGCGGAGGAGGAGAAGCGTGCGGC
GGCGGAGAAGCTGGAGGAGGAGCGCCGGCGGGTCCAGCTCTTGACGGAGC
AGATCGCTCGTCTGGCTTTGGAGAAGAAGGAGCAGGACCGTCTGCAGTAG
GCAACCGACACGCTTTGCGAAAATCACATTACGGCTGTCCTCGCTCCGGT
CATCATCAGTTGGTGCAGGAGAAGAATTAGTGGGTTGGGCCTGAGCCTCA
GCGGCGTCGTCAGCCATTTCGAGACGACGGTCCGCACGGTCGTGGTCCCC
GTAGAGCTGGGCGCAGCAGCGCACCACACACACACTTTATGGCGACTNNN
NNNNNNNNNNNNNNNNNNNNNNCAAGCGACGAAAACCCAACCCCGATGGC
AAACACCGGGGGGGCAAGGGGGGGGGGAGGCAACACCTACGGACATATAT
GTCGCTTCTTTGTGACCATGGTTGCGGGAGGCTACTACTACTGCTGTAAC
ACAGACGGTTGCTACTGCCATGAGCTAGCACGGAACGGATTGTCAGACAC
CACGCAGTGTAGGTTTGTAGCAGCACCTCTCTCTGTGTGATGTTAGCTCT
GTGCCTCGATTTCGGAACCACAGAGCAGGGTGGATGTACCCTCTCCTCGT
TGCGTGTATATGGACAGGGGGGGCGGAGGGGGGGGCAACACCTACGGACA
TATATGTCGCTTCTTTGTGACCTGGGCTGCGGGAGGTGCGTCCCCGGAAA
CCAAAACGCCTTTACAACACTTCAGCAGCAGCAAGTAGCAAGCAGCAGCA
AGCAGCAGCAACAAGCAACACAGCAGCAGCACGAACACACAAACAGCCAA
TAGGCACCAGCCTGCTCACCTGCATGGCTATTACTACTTGGTGTCATCCA
CCACAGACGCTTCCTACGTCACCTCTAGCATGGAACTTGAAGGCCCCACG
CACTTCCAGCAGCCAACATGGTATGATAGCGTAGCAGCTACATATATTTG
TATTACAGCAGCA
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protein sequence of EsuBft1023_2a-0001

>EsuBft1023_2 ID=EsuBft1023_2|Name=EsuBft1023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=201bp
MHHLFPDSNDLRRGLHRDYYVVGDSAYGATDKMLAPYPGCDLNADQDAFN
FFQSQGRICIEQTFGIMATLVAENGKDLIQRASQQRYDSVVQRGDVAALS
RSRDVAHAAAAKARESKNKAMAAKRSAEKAAEEAKKVAEEQQRLGDLATA
AAEAERASRVRAEEEKRAAAEKLEEERRRVQLLTEQIARLALEKKEQDRL
Q
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mRNA from alignment at Scaffold_132:144781..149747-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1023_2a-0001 ID=EsuBft1023_2a-0001|Name=EsuBft1023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4967bp|location=Sequence derived from alignment at Scaffold_132:144781..149747- (Ectocarpus subulatus male Bft15b)
CCATACCCACACACCAACAAATTACACCCACAAGGGGTAAATAGGGATTG
TCACTAGACGTCAACGGCCGTTTCTTATTTTCACGCTCTCTGCTCTCTCT
ACTGCACTTCGTTTCTTATGGTTTGGAGTGATCCTGCTCTCAGTTTCTTA
TTGGGGTGTTTCTTACTTCGTTCCCAAGATTGAGCTGTGTTTCTTAGCCG
GAGTTTTTCATTTTTCACCGAAATTTGAGCAAGATTTTCCTACTTAGATT
TTTTTTTACTTGCGGGCGCGTTCTGTACGTTGGACATCGACGAACATGTG
AAAAAAAACGGCCTCTCTTTCTGTGGGAAGGGGCGCACGATGAACCCTTG
GACTGCTGTTCATGAACCAGCTGAAGTGCACACGCGCTTAAAGAATGCAC
CACCTGTTTCCCGACTCAAATGATCTGCGACGCGGATTACATCGTCACTG
CCGCCTGCTGCAACACCCCGGGAAGCACCAACGATCGGCAGGCATACAAG
GAGACCGAGTTCGACCAGCTTCGAGGGTCTTCCAGGCGACTACTATGTCG
TGGGAGATTCGGCTTACGGGGCAACGGACAAGATGCTTGCACCGTACCCA
GGATGCGACCTCAACGCAGACCAAGACGCCTTCAACTTCTTCCAGTCGCA
AGGGCGCATATGCATCGAGCAGACCTTCGGGATCATGGTGAGTGTTGGCG
TAGGTATTTCGTGGGCATATCACGGGATCATGAGCCTCCTCGCGAATGGT
ATACACGATTGGTGACAAGCTGGGTCATGTTATTTTATAAAAAATAAGTA
AATATATGTTAGGACCAAGCAAACCACACGGAGGTGGACCAATCATCGCA
AGGCAGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACTCCTACGC
CACACAGCCCGTCTTGCAAGATCGAGTACTGATGGGTAACCAACGGACCA
AAAACAAAGGGCTTTCACAGCGGAGAAAAAAACAAAAATATCGCTCGCAG
CAGGCGACTTTGGTAGCTGAAAATGGGAAGGACTTGATACAGAGGGCGTC
TCAGCAGCGGTACGACAGCGTCGTTCAACGCGGGGACGTTGCCGCGCTGA
GCCGCAGCCGCGACGTCGCGCACGCAGCCGCGGCCAAAGCGCGTGAAAGT
AAAAACAAGGCGATGGCAGCCAAACGTAGTGCGGAAAAAGCAGCGGAGGA
GGCGAAAAAAGTTGCGGAGGAGCAGCAGCGGCTGGGAGACTTGGCAACCG
CTGCGGCGGAAGCCGAACGCGCGAGCAGGGTGAGGGCGGAGGAGGAGAAG
CGTGCGGCGGCGGAGAAGCTGGAGGAGGAGCGCCGGCGGGTCCAGCTCTT
GACGGAGCAGATCGCTCGTCTGGCTTTGGAGAAGAAGGAGCAGGACCGTC
TGCAGTAGGCAACCGACACGCTTTGCGAAAATCACATTACGGCTGTCCTC
GCTCCGGTCATCATCAGTTGGTGCAGGAGAAGAATTAGTGGGTTGGGCCT
GAGCCTCAGCGGCGTCGTCAGCCATTTCGAGACGACGGTCCGCACGGTCG
TGGTCCCCGTAGAGCTGGGCGCAGCAGCGCACCACACACACACTTTATGG
CGACTNNNNNNNNNNNNNNNNNNNNNNNNNCAAGCGACGAAAACCCAACC
CCGATGGCAAACACCGGGGGGGCAAGGGGGGGGGGAGGCAACACCTACGG
ACATATATGTCGCTTCTTTGTGACCATGGTTGCGGGAGGTGCGTCCCCGG
GAACCAAAACGCCTGTACAAGATCACATCATGAGCAGCAGCAGCAGCAGA
CAACCCAACCTAGCAATACAGCGTAGCCATCATACCCGCCAGCCTCCTGC
CAGGCTGCTCTGCTGCAGGCTACTACTACTGCTGTAACACAGACGGTTGC
TACTGCCATGAGCTAGCACGGAACGGATTGTCAGACACCACGCAGTGTAG
GTTTGTAGCAGCACCTCTCTCTGTGTGATGTTAGCTCTGTGCCTCGATTT
CGGAACCACAGAGCAGGGTGGATGTACCCTCTCCTCGTTGCGTGTATATG
GACAGGTACAACCACCCATCACAGACGCACACACAGCATACGGCGTTTCC
ATCACAGCACTTCCTGCACGTATCTCCCTCTCTCTGTCTCTATCTCTATT
TCTGCTCGAATTCACCCTGTGTCTCTCCACTCCACTCGGACTTGTAAAAA
ACTTCAAACAGAGGGGGCGGGGGGGGCACGGCACAACTGCATACCCCGGA
CTTATAAAAAACTTCAAACAGGGGGGGCGGAGGGGGGGGCAACACCTACG
GACATATATGTCGCTTCTTTGTGACCTGGGCTGCGGGAGGTGCGTCCCCG
GAAACCAAAACGCCTTTACAACACTTCAGCAGCAGCAAGTAGCAAGCAGC
AGCAAGCAGCAGCAACAAGCAACACAGCAGCAGCACGAACACACAAACAG
CCAATAGGCACCAGCCTGCTCACCTGCATGGCTATTACTACTTGGTGTCA
TCCACCACAGACGCTTCCTACGTCACCTCTAGCATGGAACTTGAAGGCCC
CACGCACTTCCAGCAGCCAACATGGTATGATAGCGTAGCAGCTACATATA
TTTGTATTACAGCAGCA
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Coding sequence (CDS) from alignment at Scaffold_132:144781..149747-

>EsuBft1023_2a-0001 ID=EsuBft1023_2a-0001|Name=EsuBft1023_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=606bp|location=Sequence derived from alignment at Scaffold_132:144781..149747- (Ectocarpus subulatus male Bft15b)
ATGCACCACCTGTTTCCCGACTCAAATGATCTGCGACGCGGATTACATCG
CGACTACTATGTCGTGGGAGATTCGGCTTACGGGGCAACGGACAAGATGC
TTGCACCGTACCCAGGATGCGACCTCAACGCAGACCAAGACGCCTTCAAC
TTCTTCCAGTCGCAAGGGCGCATATGCATCGAGCAGACCTTCGGGATCAT
GGCGACTTTGGTAGCTGAAAATGGGAAGGACTTGATACAGAGGGCGTCTC
AGCAGCGGTACGACAGCGTCGTTCAACGCGGGGACGTTGCCGCGCTGAGC
CGCAGCCGCGACGTCGCGCACGCAGCCGCGGCCAAAGCGCGTGAAAGTAA
AAACAAGGCGATGGCAGCCAAACGTAGTGCGGAAAAAGCAGCGGAGGAGG
CGAAAAAAGTTGCGGAGGAGCAGCAGCGGCTGGGAGACTTGGCAACCGCT
GCGGCGGAAGCCGAACGCGCGAGCAGGGTGAGGGCGGAGGAGGAGAAGCG
TGCGGCGGCGGAGAAGCTGGAGGAGGAGCGCCGGCGGGTCCAGCTCTTGA
CGGAGCAGATCGCTCGTCTGGCTTTGGAGAAGAAGGAGCAGGACCGTCTG
CAGTAG
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