EsuBft1021_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1021_8a-0001
Unique NameEsuBft1021_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_63contigScaffold_63:574165..574524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog126957.SMAR002230-PA
ProteomeIdEsuBft1021_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length36
Hectar predicted targeting categoryother localisation
Evalue3.32e-06
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota,38I47@33154|Opisthokonta,3BMCH@33208|Metazoa,3CYY1@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
Preferred namePOGK
Descriptionpogo transposable element with KRAB domain
COG categoryBD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_8aEsuBft1021_8aEctocarpus subulatus male Bft15bgeneScaffold_63 574165..574524 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_8a-0001-exonEsuBft1021_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_63 574165..574524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_8a-0001-cdsEsuBft1021_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_63 574165..574524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_8a-0001EsuBft1021_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_63 574165..574524 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1021_8a-0001 ID=EsuBft1021_8a-0001|Name=EsuBft1021_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=360bp|location=Sequence derived from alignment at Scaffold_63:574165..574524+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGAGGACGTCACACGCAATTACCGCGGCTACCCGGAGCCCCC
TTCGCGGGGTTTGGTCGCACAGTGGGTCAAGAAGGCGTGGGATGCCTTGA
CCGCGGATGAAATCCGCTCGAGCTGGAGGAAGGCTGGCCTGCTGCCGCCC
TTCGACGGGTCGGAAGACGAGGCCTGGACCAATAAGGAGCTCGGCGCCAA
CGCCAAGGGGGAGCCCATCGGCGCGCCATCGGACGCTGCGGACAAGGCTG
ACGCGTCGTCCGGAGGCGAGAACTTGCTGGAGGTGTTGGACATCGAGGAT
GATGACGACGCGGGCGTGGTGGTGGTGGACGTGAGCGACGACGAGGGCGA
GGAGCTGTGA
back to top

protein sequence of EsuBft1021_8a-0001

>EsuBft1021_8 ID=EsuBft1021_8|Name=EsuBft1021_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=119bp
MASEDVTRNYRGYPEPPSRGLVAQWVKKAWDALTADEIRSSWRKAGLLPP
FDGSEDEAWTNKELGANAKGEPIGAPSDAADKADASSGGENLLEVLDIED
DDDAGVVVVDVSDDEGEEL
back to top

mRNA from alignment at Scaffold_63:574165..574524+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1021_8a-0001 ID=EsuBft1021_8a-0001|Name=EsuBft1021_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=360bp|location=Sequence derived from alignment at Scaffold_63:574165..574524+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCCGAGGACGTCACACGCAATTACCGCGGCTACCCGGAGCCCCC
TTCGCGGGGTTTGGTCGCACAGTGGGTCAAGAAGGCGTGGGATGCCTTGA
CCGCGGATGAAATCCGCTCGAGCTGGAGGAAGGCTGGCCTGCTGCCGCCC
TTCGACGGGTCGGAAGACGAGGCCTGGACCAATAAGGAGCTCGGCGCCAA
CGCCAAGGGGGAGCCCATCGGCGCGCCATCGGACGCTGCGGACAAGGCTG
ACGCGTCGTCCGGAGGCGAGAACTTGCTGGAGGTGTTGGACATCGAGGAT
GATGACGACGCGGGCGTGGTGGTGGTGGACGTGAGCGACGACGAGGGCGA
GGAGCTGTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_63:574165..574524+

>EsuBft1021_8a-0001 ID=EsuBft1021_8a-0001|Name=EsuBft1021_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=360bp|location=Sequence derived from alignment at Scaffold_63:574165..574524+ (Ectocarpus subulatus male Bft15b)
ATGGCTTCCGAGGACGTCACACGCAATTACCGCGGCTACCCGGAGCCCCC
TTCGCGGGGTTTGGTCGCACAGTGGGTCAAGAAGGCGTGGGATGCCTTGA
CCGCGGATGAAATCCGCTCGAGCTGGAGGAAGGCTGGCCTGCTGCCGCCC
TTCGACGGGTCGGAAGACGAGGCCTGGACCAATAAGGAGCTCGGCGCCAA
CGCCAAGGGGGAGCCCATCGGCGCGCCATCGGACGCTGCGGACAAGGCTG
ACGCGTCGTCCGGAGGCGAGAACTTGCTGGAGGTGTTGGACATCGAGGAT
GATGACGACGCGGGCGTGGTGGTGGTGGACGTGAGCGACGACGAGGGCGA
GGAGCTGTGA
back to top