EsuBft1021_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1021_7a-0001
Unique NameEsuBft1021_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_63contigScaffold_63:568301..569779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1021_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length104
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_7aEsuBft1021_7aEctocarpus subulatus male Bft15bgeneScaffold_63 568301..569779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_7a-0001-exonEsuBft1021_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_63 568301..569182 -
EsuBft1021_7a-0001-exonagat-exon-111385Ectocarpus subulatus male Bft15bexonScaffold_63 569615..569779 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_7a-0001-exonagat-three_prime_utr-222Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_63 568301..569170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_7a-0001-cdsEsuBft1021_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_63 569171..569182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_7a-0001EsuBft1021_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_63 569171..569779 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1021_7a-0001 ID=EsuBft1021_7a-0001|Name=EsuBft1021_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1047bp|location=Sequence derived from alignment at Scaffold_63:568301..569779- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGGTCATGCGTACCTGATGGGCTCACATACACCCGCATTCATCT
TATCCAGGGATTCGCCGAGATGATCCACTACAAGCAGACCGTCAAGATGC
AGTCAGGAAATGTAGATGCTACGCATATCGAGTCTCGGGGCGCCCGACGT
CAACACCCTCCGCAGGTGCTCAGGTGAGAATCATAACCACCTACAAGCTG
GGCCAGCCAAGAAGTCAACGAAATGGTTAGAAGCGACTTCCGAGCCGGTT
TTTACGAATTGGAACCTGAAATTGTGATATGTGATTGGAAACAGTCTTAC
AAACGCCCCCGAGTCAGATGCCGTTTTTTTTTTTTTTGGCGAGGTATCCC
TATATTCAATAACTGAGAATCCTAGCATAGGGGTTTTTGTGGCTTTAAAA
AAAAAAAAAACGGCATCTCACTCGGGGGCATTTGTAAGACCACTCCTAAT
CACATATCAAAATTTCAGGTTCCAATTCGTAAAAACCGGCTCGGAAATAG
CAAATTGCGTCATGACCTCGATACCTGGGTGCAGGGGCGGAAATTGTGTA
GGAAAATGAAGGCCTTACAGCCCGAGAAAAGGGGCGCGAAAGCGGCCTGA
TGGCAAGAGGCGCACAGATGCTGACTGTACCCCTTTGGTGGGACAGGTAG
GTGTGGGTGCTTATCGATCGTAATGACGTGACACACAAACATGCAAGAGG
TTGTAATCTGAAGGTAAGCGCTCCAAAAACGCATGACAAATGTTTTGCAC
AAATCGCACAAAAGTTGACGTTTCTTTGTACATAACAAAAAACACTTCGT
TCGTTGGTTGACAGGGGTTAAAAAACACCCGCTTATCTAAAAACAACATT
CAAACTGACAGACTCATCAACACACACACACAACTTCTCGCACCGGTTAA
TCTTACAGAAAAAAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1021_7a-0001

>EsuBft1021_7 ID=EsuBft1021_7|Name=EsuBft1021_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MARSCVPDGLTYTRIHLIQGFAEMIHYKQTVKMQSGNVDATHIESRGARR
QHPPQVLR
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mRNA from alignment at Scaffold_63:568301..569779-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1021_7a-0001 ID=EsuBft1021_7a-0001|Name=EsuBft1021_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1479bp|location=Sequence derived from alignment at Scaffold_63:568301..569779- (Ectocarpus subulatus male Bft15b)
ATGGCGCGGTCATGCGTACCTGATGGGCTCACATACACCCGCATTCATCT
TATCCAGGGATTCGCCGAGATGATCCACTACAAGCAGACCGTCAAGATGC
AGTCAGGAAATGTAGATGCTACGCATATCGAGTCTCGGGGCGCCCGACGT
CAACACCCTCCGCAGGTGTGTCCTGTACCGTATACGTCTACCTGATTATC
CTAGACGGCACTCTGTGCTGGCAACCTCGGGAAGCCGTTGCTAAGTTGTC
ATGATATCCAATACCCGCTACCGCAATATGTGTAGACCATGTGGAGGAGG
CTAGACACTCAACGAATGACAAAAACGCGTGTTCAAGTCAACATGAGCGT
GCGACCGCACAAGTATACACATCGAGCAACGCAATGTATAGGGTTAAGCG
TATGTTCTGTGGCGCTTTGTTTTATCGTAAAAACCAGGTGCATTTGGAAT
CGGTCGTCATCCGAGATTGAGGAATGAGCTCTTCGTTCCTTTTGGAATTT
TCTGTACGACGGAACGCGGTACTGCTTTACAAAGCTGGGAGTTAAGAACA
TAACGCTCGAGAGCATCGAAACTTTACGCCCTTGACGACAAGGATAGGTG
CTCAGGTGAGAATCATAACCACCTACAAGCTGGGCCAGCCAAGAAGTCAA
CGAAATGGTTAGAAGCGACTTCCGAGCCGGTTTTTACGAATTGGAACCTG
AAATTGTGATATGTGATTGGAAACAGTCTTACAAACGCCCCCGAGTCAGA
TGCCGTTTTTTTTTTTTTTGGCGAGGTATCCCTATATTCAATAACTGAGA
ATCCTAGCATAGGGGTTTTTGTGGCTTTAAAAAAAAAAAAAACGGCATCT
CACTCGGGGGCATTTGTAAGACCACTCCTAATCACATATCAAAATTTCAG
GTTCCAATTCGTAAAAACCGGCTCGGAAATAGCAAATTGCGTCATGACCT
CGATACCTGGGTGCAGGGGCGGAAATTGTGTAGGAAAATGAAGGCCTTAC
AGCCCGAGAAAAGGGGCGCGAAAGCGGCCTGATGGCAAGAGGCGCACAGA
TGCTGACTGTACCCCTTTGGTGGGACAGGTAGGTGTGGGTGCTTATCGAT
CGTAATGACGTGACACACAAACATGCAAGAGGTTGTAATCTGAAGGTAAG
CGCTCCAAAAACGCATGACAAATGTTTTGCACAAATCGCACAAAAGTTGA
CGTTTCTTTGTACATAACAAAAAACACTTCGTTCGTTGGTTGACAGGGGT
TAAAAAACACCCGCTTATCTAAAAACAACATTCAAACTGACAGACTCATC
AACACACACACACAACTTCTCGCACCGGTTAATCTTACAGAAAAAAATGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_63:568301..569779-

>EsuBft1021_7a-0001 ID=EsuBft1021_7a-0001|Name=EsuBft1021_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_63:568301..569779- (Ectocarpus subulatus male Bft15b)
ATGGCGCGGTCATGCGTACCTGATGGGCTCACATACACCCGCATTCATCT
TATCCAGGGATTCGCCGAGATGATCCACTACAAGCAGACCGTCAAGATGC
AGTCAGGAAATGTAGATGCTACGCATATCGAGTCTCGGGGCGCCCGACGT
CAACACCCTCCGCAGGTGCTCAGGTGA
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