EsuBft1021_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1021_6a-0001
Unique NameEsuBft1021_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_63contigScaffold_63:562362..563746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1021_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length55
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_000500.2
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_6aEsuBft1021_6aEctocarpus subulatus male Bft15bgeneScaffold_63 562362..563746 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_6a-0001-exonEsuBft1021_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_63 562362..562599 -
EsuBft1021_6a-0001-exonagat-exon-111384Ectocarpus subulatus male Bft15bexonScaffold_63 563433..563746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_6a-0001-cdsEsuBft1021_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_63 562362..562599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_6a-0001EsuBft1021_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_63 562362..563746 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1021_6a-0001 ID=EsuBft1021_6a-0001|Name=EsuBft1021_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=552bp|location=Sequence derived from alignment at Scaffold_63:562362..563746- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCATCGTTACGAGACCTGCCTTTCTCCTGCTGCTCGATACGATCC
AGATCAACCCAGCTGCAAGCGAAGAGGACGTTTATCTGTATGGTCCCGGT
CGATTGTGGCGTTCGACCAAGTGGCGTTCGAGAAAACCTGCAAGACGAGC
ACGACGTCTAGACAATTGAGCGATAATGAGCCTTGCTTGGAGGACAGCGG
CGGTGCTAGCCCGCAAGGTAACGCCCCCCAGGTGGAAGAGGCGTCTGATG
CTATGGTTGGCGGTTTAAAAGATGGCCTGTTCGACTTCGGACAGGTTCAA
GAAACCGTCGATCGGCGTCACCTGACACACGGTATCCTGGGGGCCCTAAT
AGCAGCGGTTGACGACTCCAGAGCTCGAGAACTGTACAACCGGTTGCGGG
ATGTCTACAATCCGTTTCGCCCCTCTGCCTCTCTGCCAGCGCCCCCGTTG
GAGGAGTGGCGTGGGATATCTGCATTCTGCGATCGTTTCCAGTGCAGGTG
CGTTGGGGGGTTGACATCCTGCTATGGCACGTGCACAACGGTTTGTCTAT
AG
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protein sequence of EsuBft1021_6a-0001

>EsuBft1021_6 ID=EsuBft1021_6|Name=EsuBft1021_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=183bp
MVHRYETCLSPAARYDPDQPSCKRRGRLSVWSRSIVAFDQVAFEKTCKTS
TTSRQLSDNEPCLEDSGGASPQGNAPQVEEASDAMVGGLKDGLFDFGQVQ
ETVDRRHLTHGILGALIAAVDDSRARELYNRLRDVYNPFRPSASLPAPPL
EEWRGISAFCDRFQCRCVGGLTSCYGTCTTVCL
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mRNA from alignment at Scaffold_63:562362..563746-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1021_6a-0001 ID=EsuBft1021_6a-0001|Name=EsuBft1021_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1385bp|location=Sequence derived from alignment at Scaffold_63:562362..563746- (Ectocarpus subulatus male Bft15b)
ATGGTGCATCGTTACGAGACCTGCCTTTCTCCTGCTGCTCGATACGATCC
AGATCAACCCAGCTGCAAGCGAAGAGGACGTTTATCTGTATGGTCCCGGT
CGATTGTGGCGTTCGACCAAGTGGCGTTCGAGAAAACCTGCAAGACGAGC
ACGACGTCTAGACAATTGAGCGATAATGAGCCTTGCTTGGAGGACAGCGG
CGGTGCTAGCCCGCAAGGTAACGCCCCCCAGGTGGAAGAGGCGTCTGATG
CTATGGTTGGCGGTTTAAAAGATGGCCTGTTCGACTTCGGACAGGTTCAA
GAAACCGTCGATCGGTGAGCAAGGTCCAACTTTGCTTGACGAATGGTTTC
GGGTGTCATGCGAAAACTGAATATCCACCTTCTGCTACCCTGTTGGGTGA
CCCCTCTTTCTGGACTCGATCGTGCATGAGTTTTTGCAAGCATACGCGTA
ACCGTTAGTGGCGATGTTTCCTTTCTCCTCGTGGCCAGCCTTCACCTACC
TGCGTGGTGAGCAGGCCAAATATTCTCACGTTGGTCATGTTCACTTTCGT
GCTCCCGACCGCTAGAAACAGCAAGAAAACTGCTATGCCATTTTCGTGCG
ACACTTTAGGCTCCGTTGACCAATGAACACTGCTACTCGCGCTGCCACAC
GACGTGTAATGGAGAATATGTACTAGCACCCAATGACGACTCGCAACGCG
ATACGTAGCTTGCACCATCTCTAGAATGACACATTCCGTACGTAACAGGA
TCCTGGCACACCAAAACGCAGAGAGAGGGAACGCTTGTGGGACTTGGAGA
GGTTAGGGCATTGCGTCGAGGTTTTCGAGAGGTACCCTGGCCTGTGTCGC
TACATGATACGTGGTGAGCCGACCGCATGAACATCACTAACGCTGACGTT
GATGCTCTGGCTACGATCCGAGGTTTGGAACAACTACGCCTCTAGTGTGG
ACACCAAGACGAGTACCCCTTGAGTCCGTGTTGGTTGTTCAATGTGAAAA
TCTGTGAGGACTTTCGCCTGATATGCATACGATCTCGAATGCTGGTTCCG
CCATAGCCATTTCTGGCGTTCGTCATTGAGCGGTGCCAAGACATTCTCAT
CTTGTGTTTCTGCCCCCCATCGTGTGCATACCTCCCACAATGTGAAGGCG
TCACCTGACACACGGTATCCTGGGGGCCCTAATAGCAGCGGTTGACGACT
CCAGAGCTCGAGAACTGTACAACCGGTTGCGGGATGTCTACAATCCGTTT
CGCCCCTCTGCCTCTCTGCCAGCGCCCCCGTTGGAGGAGTGGCGTGGGAT
ATCTGCATTCTGCGATCGTTTCCAGTGCAGGTGCGTTGGGGGGTTGACAT
CCTGCTATGGCACGTGCACAACGGTTTGTCTATAG
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Coding sequence (CDS) from alignment at Scaffold_63:562362..563746-

>EsuBft1021_6a-0001 ID=EsuBft1021_6a-0001|Name=EsuBft1021_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=552bp|location=Sequence derived from alignment at Scaffold_63:562362..563746- (Ectocarpus subulatus male Bft15b)
ATGGTGCATCGTTACGAGACCTGCCTTTCTCCTGCTGCTCGATACGATCC
AGATCAACCCAGCTGCAAGCGAAGAGGACGTTTATCTGTATGGTCCCGGT
CGATTGTGGCGTTCGACCAAGTGGCGTTCGAGAAAACCTGCAAGACGAGC
ACGACGTCTAGACAATTGAGCGATAATGAGCCTTGCTTGGAGGACAGCGG
CGGTGCTAGCCCGCAAGGTAACGCCCCCCAGGTGGAAGAGGCGTCTGATG
CTATGGTTGGCGGTTTAAAAGATGGCCTGTTCGACTTCGGACAGGTTCAA
GAAACCGTCGATCGGCGTCACCTGACACACGGTATCCTGGGGGCCCTAAT
AGCAGCGGTTGACGACTCCAGAGCTCGAGAACTGTACAACCGGTTGCGGG
ATGTCTACAATCCGTTTCGCCCCTCTGCCTCTCTGCCAGCGCCCCCGTTG
GAGGAGTGGCGTGGGATATCTGCATTCTGCGATCGTTTCCAGTGCAGGTG
CGTTGGGGGGTTGACATCCTGCTATGGCACGTGCACAACGGTTTGTCTAT
AG
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