EsuBft1021_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1021_2a-0001
Unique NameEsuBft1021_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_63contigScaffold_63:533943..536867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra87566
ProteomeIdEsuBft1021_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl164328.Phyra87566|-
Length116
Hectar predicted targeting categoryother localisation
Evalue2.42e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3Q8Z1@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_2aEsuBft1021_2aEctocarpus subulatus male Bft15bgeneScaffold_63 533943..536867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_2a-0001EsuBft1021_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_63 533943..536867 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_2a-0001-exonagat-exon-111368Ectocarpus subulatus male Bft15bexonScaffold_63 533943..534305 +
EsuBft1021_2a-0001-exonagat-exon-111366Ectocarpus subulatus male Bft15bexonScaffold_63 534351..534361 +
EsuBft1021_2a-0001-exonEsuBft1021_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_63 535019..535211 +
EsuBft1021_2a-0001-exonagat-exon-111369Ectocarpus subulatus male Bft15bexonScaffold_63 535259..535487 +
EsuBft1021_2a-0001-exonagat-exon-111365Ectocarpus subulatus male Bft15bexonScaffold_63 536159..536250 +
EsuBft1021_2a-0001-exonagat-exon-111364Ectocarpus subulatus male Bft15bexonScaffold_63 536458..536491 +
EsuBft1021_2a-0001-exonagat-exon-111367Ectocarpus subulatus male Bft15bexonScaffold_63 536629..536867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1021_2a-0001-cdsEsuBft1021_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_63 533943..534305 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1021_2a-0001 ID=EsuBft1021_2a-0001|Name=EsuBft1021_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1161bp|location=Sequence derived from alignment at Scaffold_63:533943..536867+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTGCCGGAGACGTGGAGCCTACCGCCGGCAGCGAGGAACAGAC
TCGCACGGCGGTGCAGGGGGGGCGCGATGCGGAGCTTGCAAGTTTGAAAC
TGCAGGTTTCGCGATTGGCGGCCCTGGTGGAGGAGTCGATGAACAAGAAG
GAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGCGGCGGGATTGC
TGGCCTGGAGGCCAAGATCAACCCACGCAGCCGCTCGGCGGAGGCTGTGG
ATTTCTCCAGCAGCGAGCGAGAGATGGTGGACAAGGACCACATCAGCTGC
TGGAAGGCGGCTGGGCCAGCAGATCGGGAGCAAATCCTGTGGGACCAGCC
GGAGTGGGCCCGGGTGAGATACCCGCCTCGAAGGGCCAGCGGAGGGCGGA
CCATGCTCTCCTCGCGAGCGACGGTAGCGGCGGAGGAGGAGCGCCGGGCC
GCGGCAACAGCGGCCGCCGCAAGGGTGGCGGCGGCGGCGGCGGCGGCGGC
AACCAGAAGGGGAGAGGGGGTAGCGCGAGGGCTGGTGGCGGTGGCGAAGG
CGGCGACGACGGTGCGGGTGGCCGATTGCACCGAGAGCAAGCCCGTGCGA
TGTGAACAATTCAAGGGCTGCGGGCACGACAAGAGCAAGTACCTGGCCGA
GGAAGCGGTGCTGGTGGCGGAAGTGCCGGCGAGGGGGGCGCTTGCGGACG
CCACAGCACTGGACGTGGCAGAAGCGGCGCTCGTGGTCGGTGACATCTCA
GGCGAGTGTACTCGTTGGTCGAGGGGGTGTAGAGCAGGCCAGGTAGGACC
GAGGCCAGGTGACGAGGAGGGAGGGGAGTGGCCGGTGAGGGAGGCCATCG
GCAGCATGATGTGGGTGTCGACGCTCTCGCGTCCAGAGCATGATGTGGGT
GTCGACTTTCTCGCGTCCAGAGGGCTGGCCGTGTACGTGGACGCCAACTA
TGCCGACACGGAGGATAAGCGTTCGGTGTCAGGGTTGGCGACGACGGTTG
GAGGTACCGTTGTCAGCCATGGTAGCAAGACACAGAGCATCGTGCCTTCG
TCTTCGACGGAAGCCGACTACATTGCTGCCGGGGAGGGCGTCAAGGAGGC
GTTGTTTGTGCGTGCTGTGCTTTCGTTTGCTGCCCCAGAGACCAGTGGTA
GCAGCATCTAG
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protein sequence of EsuBft1021_2a-0001

>EsuBft1021_2 ID=EsuBft1021_2|Name=EsuBft1021_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=386bp
MSSAGDVEPTAGSEEQTRTAVQGGRDAELASLKLQVSRLAALVEESMNKK
EPGSVVADAASRGGGIAGLEAKINPRSRSAEAVDFSSSEREMVDKDHISC
WKAAGPADREQILWDQPEWARVRYPPRRASGGRTMLSSRATVAAEEERRA
AATAAAARVAAAAAAAATRRGEGVARGLVAVAKAATTVRVADCTESKPVR
CEQFKGCGHDKSKYLAEEAVLVAEVPARGALADATALDVAEAALVVGDIS
GECTRWSRGCRAGQVGPRPGDEEGGEWPVREAIGSMMWVSTLSRPEHDVG
VDFLASRGLAVYVDANYADTEDKRSVSGLATTVGGTVVSHGSKTQSIVPS
SSTEADYIAAGEGVKEALFVRAVLSFAAPETSGSSI
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mRNA from alignment at Scaffold_63:533943..536867+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1021_2a-0001 ID=EsuBft1021_2a-0001|Name=EsuBft1021_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2925bp|location=Sequence derived from alignment at Scaffold_63:533943..536867+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCCGGAGACGTGGAGCCTACCGCCGGCAGCGAGGAACAGAC
TCGCACGGCGGTGCAGGGGGGGCGCGATGCGGAGCTTGCAAGTTTGAAAC
TGCAGGTTTCGCGATTGGCGGCCCTGGTGGAGGAGTCGATGAACAAGAAG
GAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGCGGCGGGATTGC
TGGCCTGGAGGCCAAGATCAACCCACGCAGCCGCTCGGCGGAGGCTGTGG
ATTTCTCCAGCAGCGAGCGAGAGATGGTGGACAAGGACCACATCAGCTGC
TGGAAGGCGGCTGGGCCAGCAGATCGGGAGCAAATCCTGTGGGACCAGCC
GGAGTGGGCCCGGGTATAGGACCGGACTACGAGGAAGCAAGGGGGTTAAA
CCCCTCAGGTGAGATACCCGTGATTCGAGGCAATGGGGGATTCCTCGATG
GCTACAGCAGTAGCCACATGAACAGAGTAACAGTCAATGCCCCGCATCTC
GAAGGGGAGAGTTGCGGCCGTGCGTATGACTCGTGGAGAAAGTCGCTTAT
CCATGCTGCCAAAACTGTAGGACTGGACGGGCAATTGATCGGTAACGACG
AGAGATGTGCACCTCGGCAACCCAGTTGTGCCAAGCTCGAAGCTGTAGCG
ACGAGGTTCAGAGGGGCTTCCAAGCGTTCCATTTTTGTCACCACTGCCAT
CGTGAGGGAACCAACGAAGTGGGCGAGTACAAACGGTGCGTCAGCGTTGA
GTCCTTTTGCGTAGGCGTGAGTACAGCAGGTCGAGCGAGTATAGGTGCTC
GATAGGGTTTCTGCTACTGTTTGTGGGGATCGTGAAGTTGAGCATTTGCT
TCATGAGGGCTTGTTTTGAGCCCTGCGATTCCGGATCGTAGATTTCATCG
AGTTCCGCGAGGATTTCTTTTGCGGTCTCGCATTTATTCCCGAAAGCCTT
GTCGGCTTCTCCCACCCGAGAACCAACAAGCGAAGTTCCTGTTGGGAGAC
AACGACGGCGCTGGATAGGGCCGAGATCGTTTGGATCGTGAGCACGGTGC
ACGCGAGCCTCCCGGAGGGGAGGCAGGCCTCGAAGGGCCAGCGGAGGGCG
GACCATGCTCTCCTCGCGAGCGACGGTAGCGGCGGAGGAGGAGCGCCGGG
CCGCGGCAACAGCGGCCGCCGCAAGGGTGGCGGCGGCGGCGGCGGCGGCG
GCAACCAGAAGGGGAGAGGGGGTAGCGCGAGGGCTGGTGGCGGTGGCGAA
GGCGGCGACGACGGTGCGGGTAGCATGCGCGGTCGCTGCTTCCGGTGCGG
CTAGAAGGGTCGCCAGGTGGCCGATTGCACCGAGAGCAAGCCCGTGCGAT
GTGAACAATTCAAGGGCTGCGGGCACGACAAGAGCAAGTACCTGGCCGAG
GAAGCGGTGCTGGTGGCGGAAGTGCCGGCGAGGGGGGCGCTTGCGGACGC
CACAGCACTGGACGTGGCAGAAGCGGCGCTCGTGGTCGGTGACATCTCAG
GCGAGTGTACTCGTTGGTCGAGGGGGTGTAGAGCAGGCCAGGTAGGTATG
TTGCCGATACCGGCGCTACCACCCACATGTTCGCGAACTCAGATGGCTTC
GTCCGATATAACCTAATCCCGAAGGTGGACTATTTCCATTCGTCTTCCCC
TTGCCCATCATCCGCATCCATTACACTAAGACTTGCGGTAGCAAACGAGA
AGGGCATGAACCTCAATCACTGGGATGTGAAGCAAGCGTACACACACGCC
ACGCTAGACGAGGAGGCTTTCTGAGGCTCCCCGCTGGGTGCGGGGACAAA
TCGCACAAGATTGTTAAGGCTTAGCGTGCGATTTTCGGTCTGAAGCAGAG
CGGCAGGCAGTGGGGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGT
TCGAGCAGTGCAAGGCGGACCCGTGTGTTTTACACAAGATGATAGACGAA
GTCGTGGTGATGATTGTCGTGATATACGTGGGTGACATTTTGGTGGCTGG
GTCTGACGAGGATTGCAATGAGTTGCTCGCTTCTCTCAACAAGAACTTCC
CCACCAATAATCTGGGAGAATGCGAATGGTTTGACGGGTGTGCCATTGAG
AGAGATGTAGAGGCTGGGACTCTTAAAAACTCACAACCCGCGTACATTGA
CAGCATGGTGAAACGATTTGATGTACAATCGACCTCCGCATCCTTCTGCC
GCTGGTGTCGACGTAGGACCGAGGCCAGGTGACGAGGAGGGAGGGGAGTG
GCCGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACGCTCTCGC
GTCCAGAGGTCCGTTCGGCNTTTGACGGGTGTGCCATTGAGAGAGATGTA
GAGGCTGGGACTCTTAAAAACTCACAACCCGCGTACATTGACAGCATGGT
GAAACGATTTGATGTACAATCGACCTCCGCATCCTTCTGCCGCTGGTGTC
GACGTAGGACCGAGGCCAGGTGACGAGGAGGGAGGGGAGTGGCCGGTGAG
GGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGTCCAGAGG
TCCGTTCGGCGTGCGTGCGGTAGCGCGCCACGCCCACGCCCCGGCGAAGA
GGCACTGGGATGCTATCCAGAAGATCCTCGTCGTCTTGAAGGAGACGAGG
GACCTCGGCATCACCTACCACGGGGATCGGGGTTAGGGCTGGCCGTGTAC
GTGGACGCCAACTATGCCGACACGGAGGATAAGCGTTCGGTGTCAGGGTT
GGCGACGACGGTTGGAGGTACCGTTGTCAGCCATGGTAGCAAGACACAGA
GCATCGTGCCTTCGTCTTCGACGGAAGCCGACTACATTGCTGCCGGGGAG
GGCGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTTCGTTTGCTGCCCC
AGAGACCAGTGGTAGCAGCATCTAG
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Coding sequence (CDS) from alignment at Scaffold_63:533943..536867+

>EsuBft1021_2a-0001 ID=EsuBft1021_2a-0001|Name=EsuBft1021_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1161bp|location=Sequence derived from alignment at Scaffold_63:533943..536867+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCCGGAGACGTGGAGCCTACCGCCGGCAGCGAGGAACAGAC
TCGCACGGCGGTGCAGGGGGGGCGCGATGCGGAGCTTGCAAGTTTGAAAC
TGCAGGTTTCGCGATTGGCGGCCCTGGTGGAGGAGTCGATGAACAAGAAG
GAGCCTGGCAGCGTCGTGGCGGATGCAGCCAGTAGGGGCGGCGGGATTGC
TGGCCTGGAGGCCAAGATCAACCCACGCAGCCGCTCGGCGGAGGCTGTGG
ATTTCTCCAGCAGCGAGCGAGAGATGGTGGACAAGGACCACATCAGCTGC
TGGAAGGCGGCTGGGCCAGCAGATCGGGAGCAAATCCTGTGGGACCAGCC
GGAGTGGGCCCGGGTGAGATACCCGCCTCGAAGGGCCAGCGGAGGGCGGA
CCATGCTCTCCTCGCGAGCGACGGTAGCGGCGGAGGAGGAGCGCCGGGCC
GCGGCAACAGCGGCCGCCGCAAGGGTGGCGGCGGCGGCGGCGGCGGCGGC
AACCAGAAGGGGAGAGGGGGTAGCGCGAGGGCTGGTGGCGGTGGCGAAGG
CGGCGACGACGGTGCGGGTGGCCGATTGCACCGAGAGCAAGCCCGTGCGA
TGTGAACAATTCAAGGGCTGCGGGCACGACAAGAGCAAGTACCTGGCCGA
GGAAGCGGTGCTGGTGGCGGAAGTGCCGGCGAGGGGGGCGCTTGCGGACG
CCACAGCACTGGACGTGGCAGAAGCGGCGCTCGTGGTCGGTGACATCTCA
GGCGAGTGTACTCGTTGGTCGAGGGGGTGTAGAGCAGGCCAGGTAGGACC
GAGGCCAGGTGACGAGGAGGGAGGGGAGTGGCCGGTGAGGGAGGCCATCG
GCAGCATGATGTGGGTGTCGACGCTCTCGCGTCCAGAGCATGATGTGGGT
GTCGACTTTCTCGCGTCCAGAGGGCTGGCCGTGTACGTGGACGCCAACTA
TGCCGACACGGAGGATAAGCGTTCGGTGTCAGGGTTGGCGACGACGGTTG
GAGGTACCGTTGTCAGCCATGGTAGCAAGACACAGAGCATCGTGCCTTCG
TCTTCGACGGAAGCCGACTACATTGCTGCCGGGGAGGGCGTCAAGGAGGC
GTTGTTTGTGCGTGCTGTGCTTTCGTTTGCTGCCCCAGAGACCAGTGGTA
GCAGCATCTAG
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