EsuBft1020_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1020_9a-0001
Unique NameEsuBft1020_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:192807..193791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1020_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length98
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_000130.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_9aEsuBft1020_9aEctocarpus subulatus male Bft15bgeneScaffold_581 192807..193791 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_9a-0001-exonEsuBft1020_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 192807..193791 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_9a-0001-exonagat-three_prime_utr-217Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_581 192807..193623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_9a-0001-cdsEsuBft1020_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 193624..193791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_9a-0001EsuBft1020_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 193624..193791 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1020_9a-0001 ID=EsuBft1020_9a-0001|Name=EsuBft1020_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=985bp|location=Sequence derived from alignment at Scaffold_581:192807..193791- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAAAAATCCAACCGCCGCACGAGGGCTGGGAGAGGACGCGATGGG
GGTGGGAGCGCGCAGAACACTGATACGGGAGGCGGAGAGCTGGGTCCTAC
AGCTACACGTAGGGGCGGAGGACGCCGAGGCAACGGTGGAGTCAATCGCA
GTGGCGGGGGCCCGGTGAGCCCATAGGGGCACGGCTTGTGCAGCACGGCG
GGGCCAACGTTTTTTTAGCTTGCGACGTGGGGAATGTTGTTGGACAATGG
AAGTTCAATGACAGCCTGGGAAACGGGGAAGAGTTGCGTGGTTGTGTGTA
AGCCTCAGCAGCTTTTGTTTGTTTTGTGTTTGCTCACAAGGGAGATCAGG
ACCAGGTCCGAGAAGTGAGGAGGCTAGTGACGCTCAATCGGGGTACAGAG
CACACGGCGGAGCCATCGCTCTTGATTAGTGGAGATGTATAGTGATGCGT
ACGTACCACTGTCCACGTTCCGTCGCGGTCCTGAAGTCAGAGCACTGACG
CATGGTCAGGCTCTGCGAGCATATTGAGAGATTGCCAAGGGCTCGGGGTG
GTGAACAAAGGACATTGCCTTGCGCTCGCGTCGGGGTGCAAGGGCATCTG
CCCTCGTGATAAGGGGGTTTCGGCCAGAGGACAGGGAGGTGGAAGTCAGA
TGCGTACGAGCCATACTCAGTTCAACAAAAGGGGGAGGGTTCCTCTGCGT
TGAGTTTGAGGGGATCAGAAGAAAGTAGCGTTCAGACAGCAAGGGGAAAA
CACGGCATGGGGTAGTGGGACGAAGGTGCTCTGTTCTACTGTATGGAGAC
CCTCATGAACACCTCGGATCGGGTAAAGGTGAATAGTAGATACCATTTGG
GGACTTGGTCGTCTGAGGTGTTTCGTACAGTAGGAAGACCCCGGGTGTTA
TTCTTCGGGGAGAGAATAGAGACAGCATTATGGTAGTACTGATGGAGAGA
GACACGGTAGAAGAGGCGCAGAGAGCGTCTGAGGG
back to top

protein sequence of EsuBft1020_9a-0001

>EsuBft1020_9 ID=EsuBft1020_9|Name=EsuBft1020_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MLKNPTAARGLGEDAMGVGARRTLIREAESWVLQLHVGAEDAEATVESIA
VAGAR
back to top

mRNA from alignment at Scaffold_581:192807..193791-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1020_9a-0001 ID=EsuBft1020_9a-0001|Name=EsuBft1020_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=985bp|location=Sequence derived from alignment at Scaffold_581:192807..193791- (Ectocarpus subulatus male Bft15b)
ATGTTGAAAAATCCAACCGCCGCACGAGGGCTGGGAGAGGACGCGATGGG
GGTGGGAGCGCGCAGAACACTGATACGGGAGGCGGAGAGCTGGGTCCTAC
AGCTACACGTAGGGGCGGAGGACGCCGAGGCAACGGTGGAGTCAATCGCA
GTGGCGGGGGCCCGGTGAGCCCATAGGGGCACGGCTTGTGCAGCACGGCG
GGGCCAACGTTTTTTTAGCTTGCGACGTGGGGAATGTTGTTGGACAATGG
AAGTTCAATGACAGCCTGGGAAACGGGGAAGAGTTGCGTGGTTGTGTGTA
AGCCTCAGCAGCTTTTGTTTGTTTTGTGTTTGCTCACAAGGGAGATCAGG
ACCAGGTCCGAGAAGTGAGGAGGCTAGTGACGCTCAATCGGGGTACAGAG
CACACGGCGGAGCCATCGCTCTTGATTAGTGGAGATGTATAGTGATGCGT
ACGTACCACTGTCCACGTTCCGTCGCGGTCCTGAAGTCAGAGCACTGACG
CATGGTCAGGCTCTGCGAGCATATTGAGAGATTGCCAAGGGCTCGGGGTG
GTGAACAAAGGACATTGCCTTGCGCTCGCGTCGGGGTGCAAGGGCATCTG
CCCTCGTGATAAGGGGGTTTCGGCCAGAGGACAGGGAGGTGGAAGTCAGA
TGCGTACGAGCCATACTCAGTTCAACAAAAGGGGGAGGGTTCCTCTGCGT
TGAGTTTGAGGGGATCAGAAGAAAGTAGCGTTCAGACAGCAAGGGGAAAA
CACGGCATGGGGTAGTGGGACGAAGGTGCTCTGTTCTACTGTATGGAGAC
CCTCATGAACACCTCGGATCGGGTAAAGGTGAATAGTAGATACCATTTGG
GGACTTGGTCGTCTGAGGTGTTTCGTACAGTAGGAAGACCCCGGGTGTTA
TTCTTCGGGGAGAGAATAGAGACAGCATTATGGTAGTACTGATGGAGAGA
GACACGGTAGAAGAGGCGCAGAGAGCGTCTGAGGG
back to top

Coding sequence (CDS) from alignment at Scaffold_581:192807..193791-

>EsuBft1020_9a-0001 ID=EsuBft1020_9a-0001|Name=EsuBft1020_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=168bp|location=Sequence derived from alignment at Scaffold_581:192807..193791- (Ectocarpus subulatus male Bft15b)
ATGTTGAAAAATCCAACCGCCGCACGAGGGCTGGGAGAGGACGCGATGGG
GGTGGGAGCGCGCAGAACACTGATACGGGAGGCGGAGAGCTGGGTCCTAC
AGCTACACGTAGGGGCGGAGGACGCCGAGGCAACGGTGGAGTCAATCGCA
GTGGCGGGGGCCCGGTGA
back to top