EsuBft1020_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1020_8a-0001
Unique NameEsuBft1020_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:186066..187740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1020_8
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSSF56672
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR19446
Protein domainsIPR000477
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1675
Evalue1.98e-23
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_8aEsuBft1020_8aEctocarpus subulatus male Bft15bgeneScaffold_581 186066..187740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_8a-0001-exonEsuBft1020_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 186066..187740 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_8a-0001-exonagat-three_prime_utr-216Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_581 186066..187299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_8a-0001-cdsEsuBft1020_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 187300..187740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_8a-0001EsuBft1020_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 187300..187740 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1020_8a-0001 ID=EsuBft1020_8a-0001|Name=EsuBft1020_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1675bp|location=Sequence derived from alignment at Scaffold_581:186066..187740- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGCGGAGGAGGAGAAT
CCCGTTCTACATGTGCTTCATCGATCTACAGAAGGCCTACGACTCGGTGG
ACCGGGAGCTGCTGTGGAAGGTGCTGGCCCGGGCCGGGATCGCCGCGGAG
ATCATCGCCGTCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCG
CATGGACGATGGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGACTGC
GACAAGGGTGCTCAATGTCCCCACTGCTGTTCAACGCCTTCTTCGCCGCG
CCTCTCGAGGTCATTGTCACACGGTTCAGCAAGGATGAGGTTATCATGCG
GGACCTAGTATGCCTGAAGGAGGAGGAAGGGGGGGGGAGGACATTGCTGG
ACCGAGTTCGGAGGGCGGTGTGGGGGATGCTATATGCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACATAGGC
TAGATACGGCACCAATCAACGGGGCGGGAGGGGGGCGGGAGGAAACGGCG
CGGGAAGAAAGCAAAAGCGAGAAGAGACCGACCGCGTGACGTGACATGTT
GCGGTTGAACTTCAGCGACTAGTTTTTCTGTTGCCCGCTCCCCCGTTTGC
TGTCGCGTTCAGACTGTCTACGGATATCCCTGACTCTGTGCGAGTCTGTT
TATGTCCTCGTCTGTCTTTGGTTTATTTCGTTTTATTTTGTTTTGTATTT
TTACTGGCACGGACTACTGACCCTTGGGGTCCTTCCGGAAGGCTACCCCC
CAGGCTGGTGGTGCGCACGTTCCACTATTTAGTTATTTATTTGTTTCTGA
TTCTTTTGTTTTCTTGTATTTTATC
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protein sequence of EsuBft1020_8a-0001

>EsuBft1020_8 ID=EsuBft1020_8|Name=EsuBft1020_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MLFVVRRLQELGRRRRIPFYMCFIDLQKAYDSVDRELLWKVLARAGIAAE
IIAVIRKFHVGMRARVRMDDGELSDWFPVTQGLRQGCSMSPLLFNAFFAA
PLEVIVTRFSKDEVIMRDLVCLKEEEGGGRTLLDRVRRAVWGMLYAX
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mRNA from alignment at Scaffold_581:186066..187740-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1020_8a-0001 ID=EsuBft1020_8a-0001|Name=EsuBft1020_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1675bp|location=Sequence derived from alignment at Scaffold_581:186066..187740- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGCGGAGGAGGAGAAT
CCCGTTCTACATGTGCTTCATCGATCTACAGAAGGCCTACGACTCGGTGG
ACCGGGAGCTGCTGTGGAAGGTGCTGGCCCGGGCCGGGATCGCCGCGGAG
ATCATCGCCGTCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCG
CATGGACGATGGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGACTGC
GACAAGGGTGCTCAATGTCCCCACTGCTGTTCAACGCCTTCTTCGCCGCG
CCTCTCGAGGTCATTGTCACACGGTTCAGCAAGGATGAGGTTATCATGCG
GGACCTAGTATGCCTGAAGGAGGAGGAAGGGGGGGGGAGGACATTGCTGG
ACCGAGTTCGGAGGGCGGTGTGGGGGATGCTATATGCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACATAGGC
TAGATACGGCACCAATCAACGGGGCGGGAGGGGGGCGGGAGGAAACGGCG
CGGGAAGAAAGCAAAAGCGAGAAGAGACCGACCGCGTGACGTGACATGTT
GCGGTTGAACTTCAGCGACTAGTTTTTCTGTTGCCCGCTCCCCCGTTTGC
TGTCGCGTTCAGACTGTCTACGGATATCCCTGACTCTGTGCGAGTCTGTT
TATGTCCTCGTCTGTCTTTGGTTTATTTCGTTTTATTTTGTTTTGTATTT
TTACTGGCACGGACTACTGACCCTTGGGGTCCTTCCGGAAGGCTACCCCC
CAGGCTGGTGGTGCGCACGTTCCACTATTTAGTTATTTATTTGTTTCTGA
TTCTTTTGTTTTCTTGTATTTTATC
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Coding sequence (CDS) from alignment at Scaffold_581:186066..187740-

>EsuBft1020_8a-0001 ID=EsuBft1020_8a-0001|Name=EsuBft1020_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=441bp|location=Sequence derived from alignment at Scaffold_581:186066..187740- (Ectocarpus subulatus male Bft15b)
ATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGCGGAGGAGGAGAAT
CCCGTTCTACATGTGCTTCATCGATCTACAGAAGGCCTACGACTCGGTGG
ACCGGGAGCTGCTGTGGAAGGTGCTGGCCCGGGCCGGGATCGCCGCGGAG
ATCATCGCCGTCATCCGCAAGTTCCACGTCGGAATGCGGGCCCGGGTCCG
CATGGACGATGGGGAGCTATCGGACTGGTTCCCGGTCACGCAGGGACTGC
GACAAGGGTGCTCAATGTCCCCACTGCTGTTCAACGCCTTCTTCGCCGCG
CCTCTCGAGGTCATTGTCACACGGTTCAGCAAGGATGAGGTTATCATGCG
GGACCTAGTATGCCTGAAGGAGGAGGAAGGGGGGGGGAGGACATTGCTGG
ACCGAGTTCGGAGGGCGGTGTGGGGGATGCTATATGCCNNN
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