EsuBft1020_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1020_6a-0001
Unique NameEsuBft1020_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:168604..169357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog42099.EPrPV00000022427
ProteomeIdEsuBft1020_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl121069|Pythiales
Length28
Hectar predicted targeting categoryother localisation
Evalue3.27e-09
EggNOG OGs2CXBZ@1|root,2S4KE@2759|Eukaryota,1MHTN@121069|Pythiales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002280.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_6aEsuBft1020_6aEctocarpus subulatus male Bft15bgeneScaffold_581 168604..169357 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_6a-0001-exonEsuBft1020_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 168604..168699 +
EsuBft1020_6a-0001-exonagat-exon-58021Ectocarpus subulatus male Bft15bexonScaffold_581 169172..169357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_6a-0001-cdsEsuBft1020_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 168604..168699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_6a-0001EsuBft1020_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 168604..169357 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1020_6a-0001 ID=EsuBft1020_6a-0001|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=282bp|location=Sequence derived from alignment at Scaffold_581:168604..169357+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACTTGTACTCCCACTGCGATGGCGTGACGACGCCGGACGGGCT
CTACTTTGACCCGGACAATGCCATCGAGGGAGAATGGTCGGACAAGATCG
AGGCACAGATCAAGATCGCCACGGAGAGATGCGGCTGCGACGCCGCCAAC
CGGTTGGCCCCACTGCGTGGCATGGTAGTTTTTGGGACGCCTCTGTCGTC
GGTTGGCCTTGTACTGATTACGTCCCTCGTCACCTGGTCGACAGCAGTTT
TTCTGCTAAGGCCGTCGTATGATCATCCATAG
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protein sequence of EsuBft1020_6a-0001

>EsuBft1020_6 ID=EsuBft1020_6|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=93bp
MDNLYSHCDGVTTPDGLYFDPDNAIEGEWSDKIEAQIKIATERCGCDAAN
RLAPLRGMVVFGTPLSSVGLVLITSLVTWSTAVFLLRPSYDHP
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mRNA from alignment at Scaffold_581:168604..169357+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1020_6a-0001 ID=EsuBft1020_6a-0001|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=754bp|location=Sequence derived from alignment at Scaffold_581:168604..169357+ (Ectocarpus subulatus male Bft15b)
ATGGACAACTTGTACTCCCACTGCGATGGCGTGACGACGCCGGACGGGCT
CTACTTTGACCCGGACAATGCCATCGAGGGAGAATGGTCGGACAAGGTCA
GCAGCGGGTCATGTTGTCGCCATCCCAGTAGTCGTTTGCTACCCGCAGCA
GGTTGCGCACGTCAAACCTTACGCAACACACCAACCCCTTGAACGGCTAA
AGCGTCAGCATGTACACGCATGCGGTCTTTTCGCTAGTTCCACCGCGGGG
CCCTGCTGTTTCGCGTAGTATTCGGCAACGTTGGTGACTGCAAGGCCCCC
CTTGAATCCGTCAAAAGAAGTTAGTCATCAAGGAGGGTCAGAATTGCCAA
AATGCTCCATTGCGGGACGAAGCGCGCGACAACAAGTACAGCGTTGCTTT
AAACTCGAGATTTATGGTGCTCCCGTGCGCCCGACGTGCCAACAGTGGGG
GCTAGACGTAGCACCTAGTACAAAGGATCATGGGCGTTGATACAGAAATG
TCATGTGCCCGCGATGTTTTGCAGAATTGGAACATCGACTATTGACCGCG
TTGTCTTGTACGCCACAGATCGAGGCACAGATCAAGATCGCCACGGAGAG
ATGCGGCTGCGACGCCGCCAACCGGTTGGCCCCACTGCGTGGCATGGTAG
TTTTTGGGACGCCTCTGTCGTCGGTTGGCCTTGTACTGATTACGTCCCTC
GTCACCTGGTCGACAGCAGTTTTTCTGCTAAGGCCGTCGTATGATCATCC
ATAG
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Coding sequence (CDS) from alignment at Scaffold_581:168604..169357+

>EsuBft1020_6a-0001 ID=EsuBft1020_6a-0001|Name=EsuBft1020_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=282bp|location=Sequence derived from alignment at Scaffold_581:168604..169357+ (Ectocarpus subulatus male Bft15b)
ATGGACAACTTGTACTCCCACTGCGATGGCGTGACGACGCCGGACGGGCT
CTACTTTGACCCGGACAATGCCATCGAGGGAGAATGGTCGGACAAGATCG
AGGCACAGATCAAGATCGCCACGGAGAGATGCGGCTGCGACGCCGCCAAC
CGGTTGGCCCCACTGCGTGGCATGGTAGTTTTTGGGACGCCTCTGTCGTC
GGTTGGCCTTGTACTGATTACGTCCCTCGTCACCTGGTCGACAGCAGTTT
TTCTGCTAAGGCCGTCGTATGATCATCCATAG
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