Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LR00 |
| ProteomeId | EsuBft1020_5 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 75 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.48e-35 |
| EggNOG OGs | 29280@1|root,2R94D@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1020_5a-0001 ID=EsuBft1020_5a-0001|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=756bp|location=Sequence derived from alignment at Scaffold_581:158109..161279- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCAGAGGCTCGTGGAGAACGAGCAGAGAATGGCCGACCTACACAAGAA
GATACTCAGAGTGGAAGAGGCGGACGCGAAGCGGAGGGCGGAGCACGACC
AGAGGGTGGCGCAGCAGCGGGCGGCGGCGGCGGAAAAGAGGGCCAAGAAG
GAGATGGAGAAGCACGAGAGGGAGAAAGTGGAAGACGAACAAAGGAAGGA
GATGATCAAACGTGCGGCAGAGGCCGAAGCCCGACAACTGAAGATCGAAA
AGGAGCTGGAGGTGCAACGGCTCGCCGAGGCCGCCAAGCGTGAGGAGGAA
CGGCGCGCCTTGAAGGAGCAGCAAGACCAGGCGACGGCCGCGCTGATCCG
GGCCCAGGAGGAGAAGGCCGAGGCGAAGAATAGAATCATGGCCGAGCGGG
AGGCACGGGTGCAAGCCCAGCTAAACGAGAAAAAGGCGGCAAAGGCGGCC
GAGGTGGCGGCTCAGAGGGCGTCTGCCGAGCAACGCATTCAGGAAGTCAT
GGAGAAGAACAGGAAAATTCAGCAGGACAAGAAGATCGCGTACGACCTTA
AGGTTGCCGAGGTGGCTCGCCGCAAGGCGGAGAGGATGGAGGGGGAAGAA
GCCCAGGCGAAAAAGAGGGCTGAAGAGCAGGCGAAACAGGACAGCATCCG
CGCCAAGGTGTGGGAGTTTGTGGACGACGAGGGAAGGGTAGGAACGCTCG
ACGAACGGGCGGAGCAGCACCGAAGGCATACATTGATCGCTAAGGCCTTG
TTGTGA back to topprotein sequence of EsuBft1020_5a-0001 >EsuBft1020_5 ID=EsuBft1020_5|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=251bp
MQRLVENEQRMADLHKKILRVEEADAKRRAEHDQRVAQQRAAAAEKRAKK
EMEKHEREKVEDEQRKEMIKRAAEAEARQLKIEKELEVQRLAEAAKREEE
RRALKEQQDQATAALIRAQEEKAEAKNRIMAEREARVQAQLNEKKAAKAA
EVAAQRASAEQRIQEVMEKNRKIQQDKKIAYDLKVAEVARRKAERMEGEE
AQAKKRAEEQAKQDSIRAKVWEFVDDEGRVGTLDERAEQHRRHTLIAKAL
L back to topmRNA from alignment at Scaffold_581:158109..161279- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1020_5a-0001 ID=EsuBft1020_5a-0001|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3171bp|location=Sequence derived from alignment at Scaffold_581:158109..161279- (Ectocarpus subulatus male Bft15b)
ATGCAGAGGCTCGTGGAGAACGAGCAGAGAATGGCCGACCTACACAAGAA
GATACTCAGAGTGGAAGAGGTATGACTCTGCGAATGCGTGATCGCTACGG
CCCCGTGATCCATGATGCTGTTCGCGGTGCTGTCTGTGGAGGGGGTTGGA
GCGTGCTGGTGTTGGACATCACGTTATTAATTATATGTATTATTGGTGTT
CATGGTGTTCCTGCTGAGGTGCACGTGGTGAGCGGCGAAAATCCTTCTTT
GGGACTGCCCTAGAAAGCGGTAGAGTAGAGCAACGACGTGAGCGGTTTTG
CGGTGTCTTCGTGGTGGCTCATTCGAAAAGGAGGGGGTCGTGGAACGAGT
ATTGATGAAATCAACAAACTTTATTGGCAAACAACATTTCATGACCCACA
ACCCCCCCCAGAATCTTCGAAGATTGCGGCTGAATCACCCCTTGATGTAC
AATGATTGACCTGCATCTGGGTGGTGTTGGCCGGCATCAGGCGGACGCGA
AGCGGAGGGCGGAGCACGACCAGAGGGTGGCGCAGCAGCGGGCGGCGGCG
GCGGAAAAGAGGGCCAAGAAGGAGATGGAGAAGCACGAGAGGGAGAAAGT
GGAAGACGAACAAAGGTACGTGCAAGAGTGATAAATGTATACTTTCAGTG
AGCACCCATTTCTTCTACACTACTGGGTTGGTGTTGTTGCTGTTGGGAGT
GCTGCTACGCGGTTGATGCTCCGTTTTATGAGACAATCCACCCCCCACAA
CGACGAAAGTGCTTGGTTTTGGTGCGCAACGATGGACGCTCTCGTATACT
ACGACAGTCGTGTCGATCATTCCAGCAACGCTTCTACTGCTGCTGATTAT
GACGGTTGTCTTGCAAAGATGGACAGCGTGGTAACACTGGAGTTTATGGC
TCTGGGTGATGAATGCTTCCAACGTATCCCCACGGCCGGATTTCACACGG
GGGTTGGGCCATCAGGAAGGAGATGATCAAACGTGCGGCAGAGGCCGAAG
CCCGACAACTGAAGATCGAAAAGGAGCTGGAGGTGCAACGGCTCGCCGAG
GCCGCCAAGCGTGAGGAGGAACGGTAAGATGCACCGTACTAAGGGAAGGG
GGATTTCTCTCCAGCAAACTCACGGTGAATTGTCTTGCTTCCACGTCCAT
CAAACAATGAAGATGCACAATGTTTCGCGCTTTTTGTTATCGAACGTCGT
TTGCTAACATGTCTCATCCCCTCAACAGGTTTCTCTCCAAGGTCAAAGTG
TCGGCTTGGTTAGCTGGTGCTGGCTGCAGGCCGGTACAACTTGTCCCATT
TGCTGCCTAGCTCACTTTGCGCCGAAGTCCCTCGTCATCCGTTCCGTTGA
AGTTGTTTAACCCTGCCCAGTGACGTGGCCAGCCCACCGCCTCAATCGAT
TAAGCTAGGAAGAACAGCTCGAACTGGTAGTAAGACTCGTGCATGGAGTC
AACCCCCCAACTCTCTGCTCTGGCATTCAAGTGCCCACAGAATGTGCGCT
TTGGTTTTTTCCGTCGAGTCAGGCGCGCCTTGAAGGAGCAGCAAGACCAG
GCGACGGCCGCGCTGATCCGGGCCCAGGAGGAGAAGGCCGAGGCGAAGAA
TAGAATCATGGCCGAGCGGGAGGTCCGTCGGTTGGTCGTCTGGGTACCCC
CCTCTGTTGTGAATCGAAGTCCGAATCGTCAGAGAGACGTAATGACGAGC
ATGAGGAATATCTGCCATAGATTGGTGCGACGCGGGTCATGCCTCCAAAC
CTTATCGTCGACAGTGGTGGGGACCCAGCCAGTTCGTTCTCAAATCGCTT
GAAGGCTAGCTGCCAAACCGGGTCAGTGCTATTATATTATTATATGTCTT
GAAGCCAGATATTTTACCCTGTGCGTGTCGCTGTCTGTAGTGCCTCGTCG
AAACGTTGTAAACTCTCTGCATATATCTCGGCCTCTATCTCTCTCTGCCT
CTCGCTCTCTTTCTTGATGTCGCATTAGCCACGGTCGTGGTTCCGATCCA
TGTCATGACTGACCGAACGATGTTTCCTCGATTGTATTCTCCTTTCTGGC
GAGTGACCGCTGCTTGGACGTACTTTGTGTTTGCTGATGTTGCGACCACG
ATGATGTCGGGTCAGGCACGGGTGCAAGCCCAGCTAAACGAGAAAAAGGC
GGCAAAGGCGGCCGAGGTGGCGGCTCAGAGGGCGTCTGCCGAGCAACGCA
TTCAGGTTTCTGCTTGTCTGCCTGTCTGTCTGACTGTCTGTCTATCTGTC
TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCGG
TCGACCTGTCTGTCTGTTTTTCAGTCTCTTTCTGTATGTCTCTCTCTCTC
TTTTCGACTGCGGGAAGCTTGTGTCCGACGCAACGCATCCTGTGCACCAT
GCGAGGTATTGTTCTGCATTGTTAAAGTTTCCGGGACTTCGGCTGAGCTC
TTGCCCAACATTGTTCACGGCATAAGTGCAACTAGAACAACAAGAACGAC
CTGCCAGGTTGCTCACTTCAACCATACGATGCGGTGTACTCTACCGCAGG
AAGTCATGGAGAAGAACAGGAAAATTCAGCAGGACAAGAAGATCGCGTAC
GACCTTAAGGTTGCCGAGGTACGATTGGGCACGCACGAGTGCTTACCACT
GCTGTCGGAAAACTCACGGAGAATAATTGTGACCTGGCCAGAAATAAACT
ACTACTTCCTTCTCTCTACACCTCGATAAATCATGCCGATGCTGATGTTC
AGGGAGTTATTTTTGTGGATCGTTTCCTATTCTCCGGGCTTGCGACGTAA
GTCTGTTCCCCTCCCGTCAACCCTTCCGTTTGTACCGGGTCCCCACCATG
TCCAACGCAGTGTGCCCCAATTCGGTCGTCTAACCCGCGTAAACGTTTGT
TGTCGAGACTGCCTCTCGCGAGAAGCAACAAACGTCAGGCTGCCAACGAG
CAGTGTGCTCTTCTCCCTTCGCGCAGGTGGCTCGCCGCAAGGCGGAGAGG
ATGGAGGGGGAAGAAGCCCAGGCGAAAAAGAGGGCTGAAGAGCAGGCGAA
ACAGGACAGCATCCGCGCCAAGGTGTGGGAGTTTGTGGACGACGAGGGAA
GGGTAGGAACGCTCGACGAACGGGCGGAGCAGCACCGAAGGCATACATTG
ATCGCTAAGGCCTTGTTGTGA back to topCoding sequence (CDS) from alignment at Scaffold_581:158109..161279- >EsuBft1020_5a-0001 ID=EsuBft1020_5a-0001|Name=EsuBft1020_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=756bp|location=Sequence derived from alignment at Scaffold_581:158109..161279- (Ectocarpus subulatus male Bft15b)
ATGCAGAGGCTCGTGGAGAACGAGCAGAGAATGGCCGACCTACACAAGAA
GATACTCAGAGTGGAAGAGGCGGACGCGAAGCGGAGGGCGGAGCACGACC
AGAGGGTGGCGCAGCAGCGGGCGGCGGCGGCGGAAAAGAGGGCCAAGAAG
GAGATGGAGAAGCACGAGAGGGAGAAAGTGGAAGACGAACAAAGGAAGGA
GATGATCAAACGTGCGGCAGAGGCCGAAGCCCGACAACTGAAGATCGAAA
AGGAGCTGGAGGTGCAACGGCTCGCCGAGGCCGCCAAGCGTGAGGAGGAA
CGGCGCGCCTTGAAGGAGCAGCAAGACCAGGCGACGGCCGCGCTGATCCG
GGCCCAGGAGGAGAAGGCCGAGGCGAAGAATAGAATCATGGCCGAGCGGG
AGGCACGGGTGCAAGCCCAGCTAAACGAGAAAAAGGCGGCAAAGGCGGCC
GAGGTGGCGGCTCAGAGGGCGTCTGCCGAGCAACGCATTCAGGAAGTCAT
GGAGAAGAACAGGAAAATTCAGCAGGACAAGAAGATCGCGTACGACCTTA
AGGTTGCCGAGGTGGCTCGCCGCAAGGCGGAGAGGATGGAGGGGGAAGAA
GCCCAGGCGAAAAAGAGGGCTGAAGAGCAGGCGAAACAGGACAGCATCCG
CGCCAAGGTGTGGGAGTTTGTGGACGACGAGGGAAGGGTAGGAACGCTCG
ACGAACGGGCGGAGCAGCACCGAAGGCATACATTGATCGCTAAGGCCTTG
TTGTGA back to top
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