EsuBft1020_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1020_10a-0001
Unique NameEsuBft1020_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:196640..207955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LR02
ProteomeIdEsuBft1020_10
Protein domainsIPR007657
Ownerapollo_admin@sb-roscoff.fr
Noteegf domain-specific o-linked n-acetylglucosamine transferase os:rattus norvegicus gn:eogt pe:2 sv:1 [Automatic annotation]
Nb exon9
Max annot lvl2759|Eukaryota
Length1263
Hectar predicted targeting categoryother localisation
Evalue3.63e-221
EggNOG OGsKOG4698@1|root,KOG4698@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00005,RC00059
KEGG koko:K18134
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,map00514
EC2.4.1.255
DescriptionEGF domain-specific O-linked N-acetylglucosamine
COG categoryZ
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003
Cross References
External references for this mRNA
DatabaseAccession
GO0016757
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_10aEsuBft1020_10aEctocarpus subulatus male Bft15bgeneScaffold_581 196640..207955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_10a-0001EsuBft1020_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 196640..207955 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_10a-0001-exonagat-exon-58034Ectocarpus subulatus male Bft15bexonScaffold_581 196640..197026 -
EsuBft1020_10a-0001-exonagat-exon-58032Ectocarpus subulatus male Bft15bexonScaffold_581 197218..197349 -
EsuBft1020_10a-0001-exonagat-exon-58033Ectocarpus subulatus male Bft15bexonScaffold_581 198235..198393 -
EsuBft1020_10a-0001-exonEsuBft1020_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 198634..198767 -
EsuBft1020_10a-0001-exonagat-exon-58037Ectocarpus subulatus male Bft15bexonScaffold_581 199434..199569 -
EsuBft1020_10a-0001-exonagat-exon-58036Ectocarpus subulatus male Bft15bexonScaffold_581 206456..206537 -
EsuBft1020_10a-0001-exonagat-exon-58031Ectocarpus subulatus male Bft15bexonScaffold_581 207203..207345 -
EsuBft1020_10a-0001-exonagat-exon-58038Ectocarpus subulatus male Bft15bexonScaffold_581 207654..207736 -
EsuBft1020_10a-0001-exonagat-exon-58035Ectocarpus subulatus male Bft15bexonScaffold_581 207949..207955 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1020_10a-0001-cdsEsuBft1020_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 196640..197026 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1020_10a-0001 ID=EsuBft1020_10a-0001|Name=EsuBft1020_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1263bp|location=Sequence derived from alignment at Scaffold_581:196640..207955- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGATGGAATGCAGACTGGACGACGAAGAGTTTCCAACCCGTGGA
CCAGTTGGAGTGCGATGGCTGGGTTGATCATCCCGTCATGGTGATTCAGC
GGGACACCTTCGCGAATCTGTTTCACGACTCGGAAGATTTCGTCAACGCC
TTCCTGGCGATGTCTATCCTCAGAAAACGCCCGGGGGATGTGCAGGTGCT
GCTGACCGACCTTTATCCGCGAGGACCATTCTGGCCCATGTGGGACAAGG
TGTTCGGAGTGGGACGCTCAACGCTGACGGCATGGGACGTAGGGCTGGAG
TATGGCACAGGGAAGGTGTGCTTTAGGGACCTTACCGTGGGCATCTTTGG
CCCCGCCGCTCCGACGACGATGGCCAGGATGGTGACCCCCTGCTTCCACA
CGGCGCTCGTCAGGGCTTACTCGGACTTCGTCATCAGGCTTGTGTTTTGT
TCCAACAACAATCTCGTCTTTGTTTCCAAAACCGTCCGCGGCAGAGGCCT
AGATCTCCAGGGGATGACGAGCTACGCGTCCCCTCCCTCGAAGAAGGTGG
TGGTCACGTGGATGGCTAGGAGGTCTTCCGTTCAGTGGCCCGAGCGAGCC
TTTTGCAGCGAGGACGGGAGGGATTCGTTCTTCACGTGCGAGTACTTCAG
CCACCTCGACACGCGGGAGCTGCAGCGCAAGGTCAAGAACGAGGCAGATG
TGAGAGACGACAAAGCTTGGCCGAGTCACACCCCTCACTCTGGGGTTGTG
CAAGGACTTAAGGCCCTCGAGGGCGAAGAGTTTTCCAACGGTGCGGTTGT
GGAGGTTCGGGACGCGGACTACAACCTCCTCAGCTTCGAGGAGCAGATTA
AGCACGACCTAGAGACGGACGTAATGGTACCTCTTCTTTGGACTCGTCGG
CTGGGTCACACGTTGTACAACCCGGTTTCACCCAGGGCGAAGATTGAACG
TGGGAAATTGCTGATCTTTCCATGCCCCTCCATCTCCACCTCCCCCGTCT
TTCTCGTTGCCGGGACCCCCATCGATGCGCACAAGATCGGTCCGCACGGG
GCCGGATTGTTCCACATTATCTTCACCCCTGACCGAGCCAGCCTCATCGA
GCTTCAGATAGACCAGACCAAAGCCCGGAAGCACTTCAACAACCTGGCCA
AGTGGTCGGGCCACGGCTACAAAGCGTCGGGCGGGCCCAACCCCGTGAAT
GTGGCGGACACAGTAGGCATGGTGCGGGAGGCCATCGGCGACATGGACCT
CTCAAGGCACTAA
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protein sequence of EsuBft1020_10a-0001

>EsuBft1020_10 ID=EsuBft1020_10|Name=EsuBft1020_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=420bp
MRGWNADWTTKSFQPVDQLECDGWVDHPVMVIQRDTFANLFHDSEDFVNA
FLAMSILRKRPGDVQVLLTDLYPRGPFWPMWDKVFGVGRSTLTAWDVGLE
YGTGKVCFRDLTVGIFGPAAPTTMARMVTPCFHTALVRAYSDFVIRLVFC
SNNNLVFVSKTVRGRGLDLQGMTSYASPPSKKVVVTWMARRSSVQWPERA
FCSEDGRDSFFTCEYFSHLDTRELQRKVKNEADVRDDKAWPSHTPHSGVV
QGLKALEGEEFSNGAVVEVRDADYNLLSFEEQIKHDLETDVMVPLLWTRR
LGHTLYNPVSPRAKIERGKLLIFPCPSISTSPVFLVAGTPIDAHKIGPHG
AGLFHIIFTPDRASLIELQIDQTKARKHFNNLAKWSGHGYKASGGPNPVN
VADTVGMVREAIGDMDLSRH
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mRNA from alignment at Scaffold_581:196640..207955-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1020_10a-0001 ID=EsuBft1020_10a-0001|Name=EsuBft1020_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=11316bp|location=Sequence derived from alignment at Scaffold_581:196640..207955- (Ectocarpus subulatus male Bft15b)
ATGCGAGGTCAATGGGGTCTAACGACGACGGCATGCACGACTATGAGTAC ACCCCCCCCCCCATCGGCGTTTGCCATCGGGATTGGGTTTTCGTCGCTTG GCAAAGACGTTGTAAAACAAGCCAATTCACTTCGTGANNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCCGGCAT GTTCGGTTTTCCGCTTCAGGATGGAATGCAGACTGGACGACGAAGAGTTT CCAACCCGTGGACCAGTTGGAGTGCGATGGCTGGGTTGATCATCCCGTCA TGGTAACGCGCCAACATGAAACCTATACCGCAGAGGGGATTTTTGAGCCT CTTAGTATTCCTCGATGGGTTTCCATGGAAACGGACGTGTGCTAGAAAAT TGAACCGTTCCGGGTGTTTTTGCGGTGTACGCGTTGCTCCCACGCAGCTT TGCGCCCATACATACATTGATGGAGCGGAAATCCGCTAAACCTTGTCAGC CCCCCCCCGTTTCATGGGATTTCTACTCCCGGACACCCATACACCTCTAT ATATTGCTTGTCTTGGGGGCGACGTGGATTGATTTTTGGGGGGTCGTGCC TTTCCGGCAGGTGATTCAGCGGGACACCTTCGCGAATCTGTTTCACGACT CGGAAGATTTCGTCAACGCCTTCCTGGCGATGTCTATCCTCAGAAAACGC CCGGGGGATGTGCAGGTGCTGCTGACCGACCTTTATCCGCGAGGACCATT CTGGTGAGAGAAAGAGAGAGAGGGGCTGGAACTCTCTACTATTTTCGGTT TATATTTTGTTGCTTTTTGGTGTGGGGCTAATTGCGAGAAAGGAGGTTGG GCGGGGAATCTCTACGTCTAGTGTTTTTTGTGTTTTTTTGAGGGGGGGGG GCTCTGTTGTATGGGTCCTACCTTCGTCGTTAGTCTCTTCGTTGCAATGG TGTTGCCGTGTTGTGCAGTGCTCCGACAACAACCTACCAAATGCCCTGCT GGTTTTTCCAACTGCTTCCGGTGGTGACACCCCGCGGCTCAGAATTTCAT ACCTGCCGTATGAACGTGTGTACCACCCGGCGTGGGTGTTTTTCGCTGAT TGCTTCCGCATCTCTCGCTCTGTGGCCGGGCATTCAAACCGATCTCTTTC CGACCTGGAATGCTGGCTACGCGGAACGCTCGCTGGCTACGCGGAACGCT CGCTGGCTACGCGGAACGCTTTCTGCACGGAACGCTTGCTACACTGAACC CTCGGAAACGCGGGACGGCGGCACAATACCCATCCCAAAACGCGCCGGAA ACTTTCAATACGGGGCATGCCTCCAAACCCAAACATCGGGACATGAAAAT AACGTATCAATGTTGCGGTGTGCCCTGCTGAAATACCGCGCTGGGTGGCG TACGTCGGCTCACACCAGGCCCATGTGGGACAAGGTGTTCGGAGTGGGAC GCTCAACGCTGACGGCATGGGACGTAGGGCTGGAGTATGGCACAGGGAAG GTATGTAAGCGTGATTGTTTCGTTTTGTCTTGTTCTTATTTTCTTTCTCT GGCCGTTTCGGGGTACGTGCACAAACACAGTGTTTATGTGTACGTTTGGC GATGTTGGGGGTTGTCGCCGGCTATGCCGGCAGGCGTTGCGCTTGGAGTG GAGTTTGCGTGGGGCGTCGTTGCTTCGTTGGCCGCACTCTTTTGTGTTTC ATCGAGCGCCGGGCTGGAGTACGTCACAAGAAGTGTGGGGTCTCTAGGGG TCATGGCTTGCCATCGATAACGGAGGTTTGACTGTCTTGTGTCTTTAGAG AAGACGTCAGACCTTGGATTGGTTGCATCTTACAAGGGGTTTTGTTTTTT CATTTTTGCCCTCCAGCAGATTGAGGGTCGTTTCCTGTTACGCCCTCCAG GCGTTTACTCGTTGCTTTGGCACCCGATTTCTGACTCCGCTCCACGTGCT GGCGACTGGTGGTACGGGACGTGGGGTTCCCATATTACGGCGCAACGTCT TGGGGTGTGTTTTGTGTGCTACGTAGGCGCGTAGTGTCATCTTGACAGCA GGGAATGAACCATCGAGCGCTCATTTTATGAAGCCGAAATATTTTCCCAC CGTCATTGCTACCTGTCACCTCTCGAGAGCACATTTTCTGTGCTTGACTA TCGGCACTGGCCTTTGCGTACCACTCCGTTCTACTTCAAACGTGCAACTT TGCCGTCCACTGCTGTCGGCGACGCTTATCATCACCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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TTTTTGCTGTTATGTTGTGTTTTAGGCAGAACGCTTTTCTGTTTTTGTCA GGCCCTGCTTTGACGTCCTTCACGGCGCGAGTTATCCTCAGATCTCTCGC GCCGGAGTGCCTTCCGTTGTGTTTTTTTCAAGTACGTCGAGGCAGACAAA TTATTGCGCAGGCGCTGGATTCTTGAGGGGAGCGGCGTGGCCAAAGGCCG TCCAACTAGGCATTTGCCTGGCCTGTCCTTTTCCGTCATTGGCAGCTCAA TATTTGACAAAAGTAGCATAGGAGTCCGCCGGCATTCATATCAAATGCGG GAGCTCTTCAATATGGAAGAATTGCCACGCCTGTCGCTAAGGGAGGAAGA ATCCGAGGAATGCGTGGGGATGCCGGTAAGAAATAGAGCACACACTTGTT CCCCCAAGAAACGTTGCCCGGCAGTAGTGCATCGCTTTCCCCAGACGTGA GTCAAGGATACAGGTAGGACATGAACGAAGCACAAGTTCAAGCTCTCGAG GGTAGTCACTCGTTTATCTTTGGCCGGGTGGTGACAGTAATGTTTTTCAT TTGTGTGCGTGTGTGTGTGCTGGACCCTCCGAGTCTGGGGAATCTAGCGT CTGCTGATTCGGAATAATCGGGTGGTCCACGTGCACAGCCAACAACAATC TCGTCTTTGTTTCCAAAACCGTCCGCGGCAGAGGCCTAGATCTCCAGGGG ATGACGAGCTACGCGTCCCCTCCCTCGAAGAAGGTGGTGGTCACGTGGAT GGCTAGGAGGTCTTCCGTTCAGGTGTGTTGAGGCAATCGTGCCATCTGAC AGGATTTGACGTGATCATGGTACCGGCTGTAATTGCTCCTATGCACCTCG CTATGTTCTTGTCTCTGGATGGAGGTGGTAAATAGTGGCCATTTTAAAGC GACCAATCTCTTCCCTGTTGTGTGGAACACGCTCTGGGAATTTTGGGGCT GCTGTTGTCGCATGTTTGAACCCGACGACTCTCCTCCTCGCTGTGTTTGT TTGCTGTTACAGTGGCCCGAGCGAGCCTTTTGCAGCGAGGACGGGAGGGA TTCGTTCTTCACGTGCGAGTACTTCAGCCACCTCGACACGCGGGAGCTGC AGCGCAAGGTCAAGAACGAGGCAGATGTGAGAGACGACAAAGCTTGGCCG AGTCACACCCCTCACTCTGGGGTAATATGGCGGCAGCATACTTGGAATTA ATCTCGTGCAGCGAGGCGCGGCGTGCTGATATTGCAGGGGTATGTAGTGC ATCGTGTACGCTGTATCCGACTCACAACGCCGCGTTGAGTGAGCCGGAGG ACTCGTACCGTCGGCGTTCGTGTAGCGTGCCGTCCGGTGTCCACAACGGA ACGTGCACCCCTTTTTGCCAGCCATAGAGGCTCCTCTTCGTGCGCGTTAA CTTTGAGAGCCCGTGGGTGCTACGTGGGGGCTGTTTCGACTGAGCTCAAC TACGCCGCGGGTGTGTCGTGGGCTGTCGTTTCGTCTATCCGGGAAATGCA CGACTGCATAATGTTGCCACTTAACAACTATGGCCGCGTAATGACCGGCC AACATTGCCCCTACAAAAATCACGTTTTACCGAGAAATATTTGTTTCGCG AATTGTATATTCGATGATGGTAGCTGGTAACGAAGTATGTTTTCCCGCAA AGCCCGAGTGTACGTAGACGGAGACCCCTTACACCCCTACAAACCTTTCC TTCAGAAACGCCGACATTGACTGCCTTTTTTGTGCACCTACCATGCAAAC CTATTGGAAATCAATGAAGAACAACACGGCGTTTTTGTACCACATAATGC CCAGCCGACCAGAATCGGCCGAGCATCCATGTCTAGCAGGAGCACTATAG CCAGTAAGCGACGAGGCTACCTGACTTACGATGACCCTTAACTACATGTT CGGAAAATAGTTCGTTTGGGGAATGCTTCCCCCCCTCCCATCGGTGACCT CAACGCGTGTGGGCCCGGCTCGAGTACGAGGTCGTTCCAAAGAGTACGAC CCATCCTTGCCATGGCGCCCCTGCCGCCCGTCTCACGCTGTGACGCACAC ACAAAGGTTGTGCAAGGACTTAAGGCCCTCGAGGGCGAAGAGTTTTCCAA CGGTGCGGTTGTGGAGGTTCGGGACGCGGACTACAACCTCCTCAGCTTCG AGGAGCAGATTAAGCACGACCTAGAGACGGACGTAATGGTAAGCTGGTGC GGTTGGGTTTCGTTCTTCGCTTGCTCGCTGGTGGTCGAGGACAGCTGTAC GGTAGGGTTTTTGTTTGTTCTGTTTGCTTGTGGTCGAACATCCTTCTGTG TATTCTCGCTAGCAAACGAAATGCCCTCTGCTTGCCATTCATTCTGTAAG TCGATTCGTACACCTTCTTCGAGGAATAGGTACCTCTTCTTTGGACTCGT CGGCTGGGTCACACGTTGTACAACCCGGTTTCACCCAGGGCGAAGATTGA ACGTGGGAAATTGCTGATCTTTCCATGCCCCTCCATCTCCACCTCCCCCG TCTTTCTCGTTGCCGGGACCCCCATCGATGCGCACAAGATCGGTCCGCAC GGGGCCGGATTGTTCCACATTATCTTCACCCCTGACCGAGCCAGCCTCAT CGAGCTTCAGATAGACCAGACCAAAGCCCGGAAGCACTTCAACAACCTGG CCAAGTGGTCGGGCCACGGCTACAAAGCGTCGGGCGGGCCCAACCCCGTG AATGTGGCGGACACAGTAGGCATGGTGCGGGAGGCCATCGGCGACATGGA CCTCTCAAGGCACTAA
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Coding sequence (CDS) from alignment at Scaffold_581:196640..207955-

>EsuBft1020_10a-0001 ID=EsuBft1020_10a-0001|Name=EsuBft1020_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1263bp|location=Sequence derived from alignment at Scaffold_581:196640..207955- (Ectocarpus subulatus male Bft15b)
ATGCGAGGATGGAATGCAGACTGGACGACGAAGAGTTTCCAACCCGTGGA
CCAGTTGGAGTGCGATGGCTGGGTTGATCATCCCGTCATGGTGATTCAGC
GGGACACCTTCGCGAATCTGTTTCACGACTCGGAAGATTTCGTCAACGCC
TTCCTGGCGATGTCTATCCTCAGAAAACGCCCGGGGGATGTGCAGGTGCT
GCTGACCGACCTTTATCCGCGAGGACCATTCTGGCCCATGTGGGACAAGG
TGTTCGGAGTGGGACGCTCAACGCTGACGGCATGGGACGTAGGGCTGGAG
TATGGCACAGGGAAGGTGTGCTTTAGGGACCTTACCGTGGGCATCTTTGG
CCCCGCCGCTCCGACGACGATGGCCAGGATGGTGACCCCCTGCTTCCACA
CGGCGCTCGTCAGGGCTTACTCGGACTTCGTCATCAGGCTTGTGTTTTGT
TCCAACAACAATCTCGTCTTTGTTTCCAAAACCGTCCGCGGCAGAGGCCT
AGATCTCCAGGGGATGACGAGCTACGCGTCCCCTCCCTCGAAGAAGGTGG
TGGTCACGTGGATGGCTAGGAGGTCTTCCGTTCAGTGGCCCGAGCGAGCC
TTTTGCAGCGAGGACGGGAGGGATTCGTTCTTCACGTGCGAGTACTTCAG
CCACCTCGACACGCGGGAGCTGCAGCGCAAGGTCAAGAACGAGGCAGATG
TGAGAGACGACAAAGCTTGGCCGAGTCACACCCCTCACTCTGGGGTTGTG
CAAGGACTTAAGGCCCTCGAGGGCGAAGAGTTTTCCAACGGTGCGGTTGT
GGAGGTTCGGGACGCGGACTACAACCTCCTCAGCTTCGAGGAGCAGATTA
AGCACGACCTAGAGACGGACGTAATGGTACCTCTTCTTTGGACTCGTCGG
CTGGGTCACACGTTGTACAACCCGGTTTCACCCAGGGCGAAGATTGAACG
TGGGAAATTGCTGATCTTTCCATGCCCCTCCATCTCCACCTCCCCCGTCT
TTCTCGTTGCCGGGACCCCCATCGATGCGCACAAGATCGGTCCGCACGGG
GCCGGATTGTTCCACATTATCTTCACCCCTGACCGAGCCAGCCTCATCGA
GCTTCAGATAGACCAGACCAAAGCCCGGAAGCACTTCAACAACCTGGCCA
AGTGGTCGGGCCACGGCTACAAAGCGTCGGGCGGGCCCAACCCCGTGAAT
GTGGCGGACACAGTAGGCATGGTGCGGGAGGCCATCGGCGACATGGACCT
CTCAAGGCACTAA
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