EsuBft101_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft101_9a-0001
Unique NameEsuBft101_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:562858..563941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft101_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length87
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft101_9aEsuBft101_9aEctocarpus subulatus male Bft15bgeneScaffold_627 562858..563941 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_9a-0001-exonagat-exon-23833Ectocarpus subulatus male Bft15bexonScaffold_627 562858..563000 +
EsuBft101_9a-0001-exonEsuBft101_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 563209..563941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_9a-0001-cdsEsuBft101_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 562858..563000 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_9a-0001-exonagat-three_prime_utr-212Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_627 563309..563941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft101_9a-0001EsuBft101_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 562858..563308 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft101_9a-0001 ID=EsuBft101_9a-0001|Name=EsuBft101_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=876bp|location=Sequence derived from alignment at Scaffold_627:562858..563941+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGCACGTGGCGCATCGGTTTGAGGGTCATTGATTCTCCGGACTG
CCTATTTTTGCTGTTGGGGGAGGACGCCAAGATTCACGCGTACGGAGCTG
CGCAAAGCGAAAGGAAGGAGGAAATATACCTCCTTCTGAAGAGGTACGCG
GATAGACGGAGGAGGAACCGCACGCTGCTCGCTCTGGAGTGGTTGTACGA
CGACCTCTGTTGTAGAGGGGCTGATGATGTCACCAAGGGGTAGATACGAT
AGTCAGGACGTCCTCTGCTTCGACTTCTACTTCGACACCGCCGCCGGCAT
CGAAGCGCGCCAGAGGGGGCAGAGATAGAGCGAGTGAAAGAGTCGCTAAG
CGGGGTGCCTTTGAAGCTTGAACAGGTCAGCACCCTCACGGACGCAGTCG
CGATCGCCTACATGAATGCCGTAGGACTGAAGTTGACAGGCAACGTTGCA
CTCAAGCAGAACAAACTATCGGACTTTTTCGAAAGCAACAATATTTCAGA
GTACAGGTACTCTCCTTCAAGGCCTGAGACCTCGCCCGCGCCCGCTGTAG
GACCCGCCAGTGGGCACATGTCAATTTGAGGGTTGGGAACTCGAAATATC
TGTTGGTGTTGAGTTGTTGTAGATGTATTTATCGGCGGGACCTGCTCTTT
CTCCACCTTTGATCAAGACAATTAGACTAAGTATTATTTATTATTCCATG
CGTTGACCGTCAAGGGTGATGGCTCTGTCCTCCTCTTTGCGTTTTGTTGT
CTGGCGTATGTGTTTGCCTCCTGCGTGGGAGACGGGATAGATATTCCGTT
CGTCTCGTTCCGCACGACCGGTACGGATGGAGTAGAACTTGTTTTCGCCA
TGCCGAGTACGGATTGAAGAAACAAG
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protein sequence of EsuBft101_9a-0001

>EsuBft101_9 ID=EsuBft101_9|Name=EsuBft101_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=80bp
MDGTWRIGLRVIDSPDCLFLLLGEDAKIHAYGAAQSERKEEIYLLLKRYA
DRRRRNRTLLALEWLYDDLCCRGADDVTKG
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mRNA from alignment at Scaffold_627:562858..563941+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft101_9a-0001 ID=EsuBft101_9a-0001|Name=EsuBft101_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1084bp|location=Sequence derived from alignment at Scaffold_627:562858..563941+ (Ectocarpus subulatus male Bft15b)
ATGGATGGCACGTGGCGCATCGGTTTGAGGGTCATTGATTCTCCGGACTG
CCTATTTTTGCTGTTGGGGGAGGACGCCAAGATTCACGCGTACGGAGCTG
CGCAAAGCGAAAGGAAGGAGGAAATATACCTCCTTCTGAAGAGGTACACT
ATCGTCAAATTTGATGTCGGCGAGATAGTCGCGGGACTGTTTCCTCAGGA
CATACGCGAAAACAACTGTCGACGAAATTTTCGCAAAATGTCTTTGTCGA
GAGCTGCGTTGAGTATCGTAAAGCATCATATATGTGTGGTAGCGAAAGAT
GCCACGACTAGTCCGCTCTTACTCGTTCTCATCACCCGCACAATGCCCCA
GGTACGCGGATAGACGGAGGAGGAACCGCACGCTGCTCGCTCTGGAGTGG
TTGTACGACGACCTCTGTTGTAGAGGGGCTGATGATGTCACCAAGGGGTA
GATACGATAGTCAGGACGTCCTCTGCTTCGACTTCTACTTCGACACCGCC
GCCGGCATCGAAGCGCGCCAGAGGGGGCAGAGATAGAGCGAGTGAAAGAG
TCGCTAAGCGGGGTGCCTTTGAAGCTTGAACAGGTCAGCACCCTCACGGA
CGCAGTCGCGATCGCCTACATGAATGCCGTAGGACTGAAGTTGACAGGCA
ACGTTGCACTCAAGCAGAACAAACTATCGGACTTTTTCGAAAGCAACAAT
ATTTCAGAGTACAGGTACTCTCCTTCAAGGCCTGAGACCTCGCCCGCGCC
CGCTGTAGGACCCGCCAGTGGGCACATGTCAATTTGAGGGTTGGGAACTC
GAAATATCTGTTGGTGTTGAGTTGTTGTAGATGTATTTATCGGCGGGACC
TGCTCTTTCTCCACCTTTGATCAAGACAATTAGACTAAGTATTATTTATT
ATTCCATGCGTTGACCGTCAAGGGTGATGGCTCTGTCCTCCTCTTTGCGT
TTTGTTGTCTGGCGTATGTGTTTGCCTCCTGCGTGGGAGACGGGATAGAT
ATTCCGTTCGTCTCGTTCCGCACGACCGGTACGGATGGAGTAGAACTTGT
TTTCGCCATGCCGAGTACGGATTGAAGAAACAAG
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Coding sequence (CDS) from alignment at Scaffold_627:562858..563941+

>EsuBft101_9a-0001 ID=EsuBft101_9a-0001|Name=EsuBft101_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=243bp|location=Sequence derived from alignment at Scaffold_627:562858..563941+ (Ectocarpus subulatus male Bft15b)
ATGGATGGCACGTGGCGCATCGGTTTGAGGGTCATTGATTCTCCGGACTG
CCTATTTTTGCTGTTGGGGGAGGACGCCAAGATTCACGCGTACGGAGCTG
CGCAAAGCGAAAGGAAGGAGGAAATATACCTCCTTCTGAAGAGGTACGCG
GATAGACGGAGGAGGAACCGCACGCTGCTCGCTCTGGAGTGGTTGTACGA
CGACCTCTGTTGTAGAGGGGCTGATGATGTCACCAAGGGGTAG
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