Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4792.ETI51940 |
| ProteomeId | EsuBft101_12 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 7 |
| Max annot lvl | 4776|Peronosporales |
| Length | 127 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.82e-17 |
| EggNOG OGs | 2D0C9@1|root,2S4TG@2759|Eukaryota,3QFWN@4776|Peronosporales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft101_12a-0001 ID=EsuBft101_12a-0001|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1270bp|location=Sequence derived from alignment at Scaffold_627:575169..581183- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGCGGTGTCTCTCCGGTGGTCTATCTCCCGTCTCTTCGTGCCTGAGACA
TCAAGCAAGAGGGGCAACCGGTCATATTCGTGCCCGCGGGGAAGGTTGAT
CGTCTAGCACATCGTAGTATGACGAAGGACTCCCCCAAAAAGTCAGCGGG
TAGCTCGACCGCCACGAAGAAGGCGCAGCATGGGCGTGGCAGCGGCGGCA
CCTCCGTCAAGAGAGAAGTGAAGAGAGAGGTCGACACCAACGTGAAGAGC
GAAAAAGGTGAACGAGAAGAAGCCGTTCTCAAGGAGAAGCGCAAGGCGGG
GCAGAAGCTCGCCACGCCTCCTCCGGGTCAGGCGGATCGCTGTTTCTACG
AGACGCTGCTGAAACAAAAGCCGGAGAGCCACATGGCGCAGGACTGGTGT
CTGGCGCACGGGGTGTGCGGGGCGGCTGAAGCGGAAGCCCTCTACAAGAG
AGTCTGCAAGAGGAAAGGGCTGCAACCGTTAGCCCACGCGCCGTCGTTAT
CCAATTCCCCCATCAAAAAGGCGAAGCGTTCTTCATCGGGGGGTAAGAGC
AGGCCGAGGAGCAGCTTGCCGAAAGAGATGGACGCGGATACGGGTTTCGA
AGCAAGTGGCGTTTTCGAGGGAGTTGGCACGACAGGATTTTAATCGGTCG
GGGCTACGCATCTTCTGTAGTTTTTTCCTTTTCCGTGTTCGCGCTTAGGT
TTTTATTAATGAATACTTCCAATGTGCGTGCGTGTGCTGTGTGCATTTGC
CAGCTGTCTGTACTCGACCACCTGCCGGAAGAACTGCCGCGCTCCACGTG
AGGCGTACTGGGTTGGTTGGGTCTTGTGCGTTAGACCCACCGTCTCTGGA
TGGAGGATGGTGTCAGCAGGACGTACATGTGTTGACGGCCACGGCGCTGT
CTCCATTTAGACCTCAAACGACCCCGGCAGGATATATGTTTGGGAGGCAT
GGCACGGATATTCGAAAGATCAGCCGTACTTCGGAAATTCAGGGCGGTGC
GGCGTCGTCCCGGCCGGCGGCCTGGGCGGTAAAGCGGCAGGGCGTCTGGT
AGTAACAATAAGAAGAAGCAATGAGAGAGAGAGAGAGAGCAATATTGCAA
GACTCCCGGTCTGAAGGGCGACGGTGCACTGCTACCGCTGTTGCTGTTCC
AAGATGTTCACGCCGCGAATGCATGCGTCCTTCTCCGGAGAGAACTGTTG
ACGGCGATTCTGCGCGGAAAAAAATTGCCGGTGACAAGAGAAAACGATTT
CCACATCGCCGTATTTGCGT back to topprotein sequence of EsuBft101_12a-0001 >EsuBft101_12 ID=EsuBft101_12|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=174bp
MTKDSPKKSAGSSTATKKAQHGRGSGGTSVKREVKREVDTNVKSEKGERE
EAVLKEKRKAGQKLATPPPGQADRCFYETLLKQKPESHMAQDWCLAHGVC
GAAEAEALYKRVCKRKGLQPLAHAPSLSNSPIKKAKRSSSGGKSRPRSSL
PKEMDADTGFEASGVFEGVGTTGF back to topmRNA from alignment at Scaffold_627:575169..581183- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft101_12a-0001 ID=EsuBft101_12a-0001|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6015bp|location=Sequence derived from alignment at Scaffold_627:575169..581183- (Ectocarpus subulatus male Bft15b)
GTGCGGTGTCTCTCCGGTGGTCTATCTCCCGTCTCTTCGTGCCTGAGACA
TCAAGCAAGAGGGGCAACCGGTCATATTCGTGCCCGCGGGGAAGGTTGAT
CGTCTAGCACATCGTAGTATGACGAAGGACTCCCCCAAAAAGTCAGGTGT
GTTGGGGGAATTGGCAGTGTGTGTACACAGAGAAGGCGAATGAAAACACA
ACCAACAGCGGCGAACACCTTGGCTGCATTTGGGGCGACATCGAGTGCTT
TGTGTACAGGCAACGTGTGTTGGTTTCAACGGAACAATAGGTGTCTAGTA
TGGGGGACACGTGCGGGCGAGGGGATCAGCCCTTCTACCGCCGGGATAAT
CTTCTCATGAATGACCTTCCTATTGCTAAGCGGTCATCTCTGTACATCTC
CTCCGCCCCCCCATGATAACTCAGTGTATATTGCTTGCCTGGCCTACTCC
AGCAGTATCATTATGCATTCTACTAAGTATCCGGCGAGGAGGTGCCGGTG
CCCTTTGGATGTCGGTGCCTAAAGCTGCACATACATATTGATTGCACCGG
ATTCGCTCCGATTCCCATGGGTATATTCAACGCTTTTGCGCTTCCAGCTG
CGCTGGAGAGTGACTGACTCCAAACAACAGATTTGACTCCAAACAACAAG
GTTGTACTCCGAGTATGCATAGACTTCTTTGTACTCCACATGACCAGTGT
ACCTGATACTGGTAGATGTGCAACCTGTCCTTTTCACCTTCTTCTTCACC
AAATTGAGCGTATCCAGTGGACTGTGCAGCATGTACATGCATGGTACAGG
TTACAAGTTATGCAGGGTGAAGAACTCCTCTTTGGCTTCGGAGAATGGAG
GAGGAGTGGCGTCGGTTGTTCCAGTACGCTGTAACGGCCGCATTTTTTTT
CAACCGCAACTCCAATCGAAAAACTCTTCTTTAGAGATGGATTCATTGGG
TCATATTGATGAAATAAACAAAAACCTTGGTACTCAAGTTCGGCTTCACG
GTCGACGAGGGAAAGGGATGGCTGAGCGCTTCTCGCGATAATAACTAAGG
CAAGCACCGCAGGGGGAAAGGTGGGGCAATACAACAAAAACAAAAAAATG
AACAAAACTGCTGTGTGACCTTCCTCTTGTTGTGTGACCCCGGCTGTTAC
GTCAGGTATAGACTAGGCTATACGGCGAAAGGCCTGTAAGCCGGCGCGAG
AATTTGATGGGATCGATGGGATTGATGGGATTGATGGGATTGATGGGACT
GATGGGACTGATGGGACGAACACTCACACTGGTGGTGGGAATACTGGCAA
CGATAGTGTCGGTAGCAAATGCAGGGAAGGCGATGAGACAAGGTCAAACG
CACGCGCATCCGAAGTATAGAAGCCACAGCAAAACACGCGCAGTTTCTTT
TGTTACTAATATCGCACGGTGTCTGCTCTTTTTCCGGAGAGCAGCGTAGA
GTCCCCCATGACACTCGGTCACAGTGTCCCAGATCGTGGACTATGGAAGC
ACTCTTGTGTTTTCCACCGCAATGAGACTGACGTCTTTTCATTGGTCAAC
CGGTTAGCGCGGTCAATGCCAATGCAAAAGACACACACTTCATCGATCAA
CGCTTGGGGTGCTTGGGACGGGTCTTGTTCGTAGTCAACGTACGCTCTTC
TTGCTTCATCTTATCAACATCGCGGTAGTGTTCTTCCTTCCCGTTTGCTT
GCAGCGGGTAGCTCGACCGCCACGAAGAAGGCGCAGCATGGGCGTGGCAG
CGGCGGCACCTCCGTCAAGAGAGAAGTGAAGAGAGAGGTCGACACCAACG
TGAAGGTGAGGGACGGGGCCGGCGTCCAGGGAACAAGCGTGGGAGCGAGC
ACCACAAGTCGTTGCCGAGGTCTCGGCGGGGTCGGCGCAGTCCGGGGCTT
GGAGTTATTGCGTTTTCGAGGCGTGTGCGGGGCGTCATTCATGCCTCGCA
ACGATCTCTGCCTGCCTTCTCGGCTACCTACATTTTGAAGCTGGTGGTCT
CAGCGTTGCGTAATGAAGAAATATCCCTCGGAACTTTTTGCACCGAACCA
TGGACATTGTGTGTGTGCGGGCGGCAGTTGAATAGCGGCAGCGGGCGGCA
ACACGCGGAAAGTAGGACGGAGGCAGAGAAAGCGACAGCTCCACAAAGCA
GTACATACAACGCGTGAGGTATCTGAGCCCAGGTTACGCGAAGATGGACT
TGGCGCCTCGACCCCTCGATGCTGCTGTTGGCGGACCTTTGTTTGCTTTC
GTTCATGGCCTGAGAGCAAACAAGTTTTTGCTGGCATGTGTGGCATGTGG
GCCCACGTGTACTTGACGCATCATTGTTGTTGCGTTTGCGGAAGAGCAAC
ACCCCTCCGCGGCACGCCGCTCCTTTCTTCAGCTTTGAGCGAGGGCTAAA
GACATCGGCAAGGACACGGGGCTTTCCTGCAGGAGTCAAGGGAAGCCGAA
GATGACCCTCTGACCCACTGCTGTCCTCTCGCGCGCCGCCGCCCGGAAAT
GATGTAAAGCCTCGTTCTGCGTTCACGTTCAATGAACCTAAACTTTCCAC
ATGTTTCTTGCCAGGTTTCTCATCCCACCCACCCTCTCCACGGTCCGCCA
GTCTTGACTCTGTTGAGAGTGAGGCTTGATTGTACGATCTGCTCTGCGCG
CCCCCCTCCGCCCGCGTTCCTCTATCGTTACTGCTGACTGCTGCTGCCCT
TCTTGCCCCCCCCGCCCCCCCCCCGCGCGCGCGCTTTGTGCCTCGCCGTG
TTCCATGCAACGATGCAGAGCGAAAAAGGTGAACGAGAAGAAGCCGTTCT
CAAGGAGAAGCGCAAGGCGGGGCAGAAGCTCGCCACGCCTCCTCCGGTGA
GGGGAACCCTCGTCGTCTATTTACTAACCACCCTTTTAATCTCCGGTTAC
GTTTCGCCTCCAGTATTGTTTCGAAATTCCTTTGTAGAGTTTCCACACCG
TCCGTAGTCAATGTAGCACACCCAAGTGCTGGTAGGTGCAGGTTTGGTTC
TTGTTCGCGTTAAGTCCTATGGAGGGCGGAGGACCGACGACTGTACATTA
GTACCACGAACTTTTCAGGTGGTGCGGAGCTACCTGTTTCTCGAGATCCT
GTAGTTTTGTAGAGCAGCGAGCTATGCTACGGTACTGGTACTGGTGTCCG
TAGAGAGCTTCAGGGATGTGCCCTCTCCGTATGGACGCGCGAATGGACGC
TTCGTGCCTCGTGATTATTGTGCTGATGCCTCTTCTCGTCTCTTCTCTTT
CTGGTGCTACTGTTGGATTGGGCGTCTTGTGACGTCACCGCGGCGGGCTG
GCAGGGTCAGGCGGATCGCTGTTTCTACGAGACGCTGCTGAAACAAAAGC
CGGAGAGGTAGGTGGGCATGCATGTTTTGCGTTTGTTTCTTTACATGCCA
TCGACCGCGCTCACCGGCTGGCTAAATGATGATTCTCTCGTCTTTTTTGA
AATATACGCGATTTTTTTTTTCTAGTCCGCGGACTTCCGTGGTGTGTGCA
AGTGTGTGTCGTGTTTTGTATGCCTCTCTGTATGTGTGTTCATGGTACTG
GATATTTGCCGTCAGCAGCGGGCGTTTGTATTGGATTTGTTGCTTGTGGC
GGCAGTGGTTAAACTCAAGCATAATCGTCCCGGGCTGTGAAAACAAGCGC
GGGAAAAACGGGCGCTGGGCATCGAACAGCAGCGATGTTGAGTTTCGCGT
TGTAACAACCCCCATGGATCAATACTAGCCATTTTTTTTTTTGCTTGTCA
TATGTCGCCGTTGCTTGTAAATATTTCAACTACCTCACGGTCTTGACTGT
CTGGATTGTCTTTCCCTCCCTTGACTGCCCCACTCACCGCCTTCGCCGTT
CGCTTCCCGATGCCCGGGTGGGCCGAAAAGCCACATGGCGCAGGACTGGT
GTCTGGCGCACGGGGTGTGCGGGGCGGCTGAAGCGGAAGCCCTCTACAAG
AGAGTCTGCAAGAGGAAAGGGCTGCAACCGTTAGCCCACGCGCCGTCGTT
ATCCAATTCCCCCATCAAAAAGGTAATAGCGCGCGCAGACGTTTGGCTGG
AGTGACATTAATCGTGTACCCTTGTTTTTGTCGGCAGCAGACTCTGATAA
TTACCTTATTCATGCGTGGCTCTGACTGGTGCGACAAACAAACCCCAATT
GTAGACCGGTGGGTGGAACCAAAGCCCTCACACACGCCTTGATTTCGCCG
CTGAAGCTGACATCTGTTCATCGATGAGCCGGCTAGCACGGCCCATGCTA
TTACACCTCAATACTCAACACACATCCGCTCGAGAGTGCCGGCAGGCACA
CCGCTTGAGCCTCAGCAACGCGGTAGCTGGAAACAGCATGGGGTTTGGTC
CAGCGTTCATGCAATCCTTGATCCAACGGAGGCGTTGTTTTTGGAACAGC
AGTAGCGGCGCCGGGTTCGTATGCACATTGGCAGCGAGCGTACACAAGCG
TCTGCTATTTCTTCCAGGCCGTACGATATCGAATTTCCGAGGGCGCCTGC
GATGCATAACAGGGAGTGTTCGTGAATGCCTTCGCTGTCCCGGCCGTTGA
GCTCCAACATTTCCGACGGGGTGTGAACTCGTACTTGGGTGCGGCAACCG
GTAGCGGTTTCGTACCGCATGCACGCTTTTCATGTCAATTCGAAAGGTGT
AAAACAGGGTACCTCCCATGCCCGTCTCTACCCTTGACCTTTCTTGACGC
ACACGCGCACGCGCGGATGGGGGTCGTGTTGCTTGGTTCCGCTTCGCAGG
CGAAGCGTTCTTCATCGGGGGGTAAGAGCAGGCCGAGGAGCAGCTTGCCG
AAAGAGATGGACGCGGATACGGGTGGGTGGTAACCATCCCATTTGGCCAT
GTGTACAATCGAATGCTGTATGAACCTCTCATTACGTATAGTTTTTCATT
TTCAGCAGCCCAACCAGCGAAATAGGCCGTCGCCGCGAGCGGTGCGGCTT
TCATGCAGGTGGACGCTAACAGTTGTGTAGTGACCTGTTTCTTGGATGAA
TGTCGTTCTTCGAAGCATGTCGCCTCGTGAGGGTTTGTGTTGTCTCGGTT
GCTTCGGTTGTCTGTGCGTAAGAGAAAGTAGTTTCAAGACACGTAAAGGA
AAGCAGCCCATGAATTGCGGTCACTTTTGATGCATTTTTTTCCCTTTGAA
GATTCTGGCGCAAAGTCACGTGGCCTTAGACGGGCGTTGGTGGGGCATCA
TCTTGACGCCCGCAAGTGCCTACCATATGCGTGGAACCTTTTCTTTGGAC
TGAAAATTTAATCGCCGTGTGCCCTATTGTGTGACTGCGCAGTCCTCCCC
CCCCCCACCCCTCCTCCCCCTCTTGTGGCGATGTCCAGGTTTCGAAGCAA
GTGGCGTTTTCGAGGGAGTTGGCACGACAGGATTTTAATCGGTCGGGGCT
ACGCATCTTCTGTAGTTTTTTCCTTTTCCGTGTTCGCGCTTAGGTTTTTA
TTAATGAATACTTCCAATGTGCGTGCGTGTGCTGTGTGCATTTGCCAGCT
GTCTGTACTCGACCACCTGCCGGAAGAACTGCCGCGCTCCACGTGAGGCG
TACTGGGTTGGTTGGGTCTTGTGCGTTAGACCCACCGTCTCTGGATGGAG
GATGGTGTCAGCAGGACGTACATGTGTTGACGGCCACGGCGCTGTCTCCA
TTTAGACCTCAAACGACCCCGGCAGGATATATGTTTGGGAGGCATGGCAC
GGATATTCGAAAGATCAGCCGTACTTCGGAAATTCAGGGCGGTGCGGCGT
CGTCCCGGCCGGCGGCCTGGGCGGTAAAGCGGCAGGGCGTCTGGTAGTAA
CAATAAGAAGAAGCAATGAGAGAGAGAGAGAGAGCAATATTGCAAGACTC
CCGGTCTGAAGGGCGACGGTGCACTGCTACCGCTGTTGCTGTTCCAAGAT
GTTCACGCCGCGAATGCATGCGTCCTTCTCCGGAGAGAACTGTTGACGGC
GATTCTGCGCGGAAAAAAATTGCCGGTGACAAGAGAAAACGATTTCCACA
TCGCCGTATTTGCGT back to topCoding sequence (CDS) from alignment at Scaffold_627:575169..581183- >EsuBft101_12a-0001 ID=EsuBft101_12a-0001|Name=EsuBft101_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=525bp|location=Sequence derived from alignment at Scaffold_627:575169..581183- (Ectocarpus subulatus male Bft15b)
ATGACGAAGGACTCCCCCAAAAAGTCAGCGGGTAGCTCGACCGCCACGAA
GAAGGCGCAGCATGGGCGTGGCAGCGGCGGCACCTCCGTCAAGAGAGAAG
TGAAGAGAGAGGTCGACACCAACGTGAAGAGCGAAAAAGGTGAACGAGAA
GAAGCCGTTCTCAAGGAGAAGCGCAAGGCGGGGCAGAAGCTCGCCACGCC
TCCTCCGGGTCAGGCGGATCGCTGTTTCTACGAGACGCTGCTGAAACAAA
AGCCGGAGAGCCACATGGCGCAGGACTGGTGTCTGGCGCACGGGGTGTGC
GGGGCGGCTGAAGCGGAAGCCCTCTACAAGAGAGTCTGCAAGAGGAAAGG
GCTGCAACCGTTAGCCCACGCGCCGTCGTTATCCAATTCCCCCATCAAAA
AGGCGAAGCGTTCTTCATCGGGGGGTAAGAGCAGGCCGAGGAGCAGCTTG
CCGAAAGAGATGGACGCGGATACGGGTTTCGAAGCAAGTGGCGTTTTCGA
GGGAGTTGGCACGACAGGATTTTAA back to top
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