EsuBft1019_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1019_8a-0001
Unique NameEsuBft1019_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:32634..32885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FNE2
ProteomeIdEsuBft1019_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length16
Hectar predicted targeting categoryno signal peptide or anchor
Evalue1.89e-19
EggNOG OGsKOG2171@1|root,KOG2171@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-22_001410.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K20195,ko:K20221,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,map04138
Descriptionribosomal protein import into nucleus
COG categoryS
BRITEko00000,ko00001,ko03009,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_8aEsuBft1019_8aEctocarpus subulatus male Bft15bgeneScaffold_392 32634..32885 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_8a-0001-exonagat-exon-46362Ectocarpus subulatus male Bft15bexonScaffold_392 32634..32759 +
EsuBft1019_8a-0001-exonEsuBft1019_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 32847..32885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_8a-0001-cdsEsuBft1019_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 32634..32759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_8a-0001EsuBft1019_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 32634..32885 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1019_8a-0001 ID=EsuBft1019_8a-0001|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=165bp|location=Sequence derived from alignment at Scaffold_392:32634..32885+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTGGCCCTCCGGCGGGGGGTATTGGCGAGCTTCTTGGCGCGTT
CACGAGCCCGGACAATGGCGTGAGGCGGAGAGCGGAGCAAGCTTGGGAAG
ACATGAAAATGCGGCTCCCCGATCAGGAACCGCAGGAGGAGGTCCAGCCC
CCCCCTCCCATGTGA
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protein sequence of EsuBft1019_8a-0001

>EsuBft1019_8 ID=EsuBft1019_8|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MASGPPAGGIGELLGAFTSPDNGVRRRAEQAWEDMKMRLPDQEPQEEVQP
PPPM
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mRNA from alignment at Scaffold_392:32634..32885+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1019_8a-0001 ID=EsuBft1019_8a-0001|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=252bp|location=Sequence derived from alignment at Scaffold_392:32634..32885+ (Ectocarpus subulatus male Bft15b)
ATGGCGTCTGGCCCTCCGGCGGGGGGTATTGGCGAGCTTCTTGGCGCGTT
CACGAGCCCGGACAATGGCGTGAGGCGGAGAGCGGAGCAAGCTTGGGAAG
ACATGAAAATGCGGCTCCCCGATCAGGTGTGTTCGTGTTGTGTGGGCAAG
CGCGACCGACATATTCAAGTGGAAGGTGCTGCACCCTCCTCGCGATAAAA
ATACCTCAGGCAGGAACCGCAGGAGGAGGTCCAGCCCCCCCCTCCCATGT
GA
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Coding sequence (CDS) from alignment at Scaffold_392:32634..32885+

>EsuBft1019_8a-0001 ID=EsuBft1019_8a-0001|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_392:32634..32885+ (Ectocarpus subulatus male Bft15b)
ATGGCGTCTGGCCCTCCGGCGGGGGGTATTGGCGAGCTTCTTGGCGCGTT
CACGAGCCCGGACAATGGCGTGAGGCGGAGAGCGGAGCAAGCTTGGGAAG
ACATGAAAATGCGGCTCCCCGATCAGGAACCGCAGGAGGAGGTCCAGCCC
CCCCCTCCCATGTGA
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