Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2880.D7FNE3 |
ProteomeId | EsuBft1019_3 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 2 |
Max annot lvl | 2759|Eukaryota |
Length | 33 |
Hectar predicted targeting category | other localisation |
Evalue | 1.12e-14 |
EggNOG OGs | KOG3777@1|root,KOG3777@2759|Eukaryota |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Description | zinc finger CCCH-type containing |
COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1019_3a-0001 ID=EsuBft1019_3a-0001|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=336bp|location=Sequence derived from alignment at Scaffold_392:55355..55769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCAGGTACGGGGAAGAAACGGCAGCGACCAGAAGGAGGAAGCTGGAG TGGGGGGCAACCACCGGACGGGCAGCGGCCGAACGGCGACGACGATCACG ATAACGACGATCGTGGCCGTCGTTGGAGCGGGGAGAGAGGACAAGGGGAT ACCATGGCGCCACAAGCACGGCGCGAAGCCGCCGCTGCCGGCAGCGGAGG CGTTCTTGGTGCCCACAGCCGCCGCGCAGGAGAATACGGCGGTGGTAGTA GCCAGGGGCCGCTCGAGGGCAGCAGCCACAACGATGGCAAGCGCCGCTGC AACACCGTCCCCTCCGACTGCGGCTGGTTCCACTAG back to topprotein sequence of EsuBft1019_3a-0001 >EsuBft1019_3 ID=EsuBft1019_3|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=111bp
MAGTGKKRQRPEGGSWSGGQPPDGQRPNGDDDHDNDDRGRRWSGERGQGD TMAPQARREAAAAGSGGVLGAHSRRAGEYGGGSSQGPLEGSSHNDGKRRC NTVPSDCGWFH back to topmRNA from alignment at Scaffold_392:55355..55769- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1019_3a-0001 ID=EsuBft1019_3a-0001|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=415bp|location=Sequence derived from alignment at Scaffold_392:55355..55769- (Ectocarpus subulatus male Bft15b) ATGGCAGGTACGGGGAAGAAACGGCAGCGACCAGAAGGAGGAAGCTGGAG
TGGGGGGCAACCACCGGACGGGCAGCGGCCGAACGGCGACGACGATCACG
ATAACGACGATCGTGGCCGTCGTTGGAGCGGGGAGAGAGGACAAGGTGAC
TGGCGAACGTGCGGGATCAGCAGGCGGGGGAAGGGGGCGGCGGCGAGAGA
GAGAGAGTTCCCAAAGACAGGAAGGGGATACCATGGCGCCACAAGCACGG
CGCGAAGCCGCCGCTGCCGGCAGCGGAGGCGTTCTTGGTGCCCACAGCCG
CCGCGCAGGAGAATACGGCGGTGGTAGTAGCCAGGGGCCGCTCGAGGGCA
GCAGCCACAACGATGGCAAGCGCCGCTGCAACACCGTCCCCTCCGACTGC
GGCTGGTTCCACTAG back to topCoding sequence (CDS) from alignment at Scaffold_392:55355..55769- >EsuBft1019_3a-0001 ID=EsuBft1019_3a-0001|Name=EsuBft1019_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=336bp|location=Sequence derived from alignment at Scaffold_392:55355..55769- (Ectocarpus subulatus male Bft15b) ATGGCAGGTACGGGGAAGAAACGGCAGCGACCAGAAGGAGGAAGCTGGAG TGGGGGGCAACCACCGGACGGGCAGCGGCCGAACGGCGACGACGATCACG ATAACGACGATCGTGGCCGTCGTTGGAGCGGGGAGAGAGGACAAGGGGAT ACCATGGCGCCACAAGCACGGCGCGAAGCCGCCGCTGCCGGCAGCGGAGG CGTTCTTGGTGCCCACAGCCGCCGCGCAGGAGAATACGGCGGTGGTAGTA GCCAGGGGCCGCTCGAGGGCAGCAGCCACAACGATGGCAAGCGCCGCTGC AACACCGTCCCCTCCGACTGCGGCTGGTTCCACTAG back to top
|