Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LR81 |
| ProteomeId | EsuBft1018_8 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 25 |
| Hectar predicted targeting category | signal anchor |
| Evalue | 6.87e-52 |
| EggNOG OGs | 2CMNQ@1|root,2QR22@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1018_8a-0001 ID=EsuBft1018_8a-0001|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=255bp|location=Sequence derived from alignment at Scaffold_161:335703..335957- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGGAGCTTTTCCGAGATACTCGAGCAAACCATACACGAGTGGCCGAA
TGTGCCGGACGAGACGTACTGGGCCTTGGTGTCCCTGCCCTTCCTGACCC
TAGTGGTATGCTGCGTCTGGCTGCGAGTGGTGTGGCCTTGCCCGACTCAC
GACAATAACCTGAAGGACTTCACCCCTGCGACGCTGCTCGGCGACACCGG
CGGCGGCGGCAGCGTCACCGAGAGGAGCGCGCTGCAAGACGCCTCCAATG
GGTGA back to topprotein sequence of EsuBft1018_8a-0001 >EsuBft1018_8 ID=EsuBft1018_8|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MRSFSEILEQTIHEWPNVPDETYWALVSLPFLTLVVCCVWLRVVWPCPTH
DNNLKDFTPATLLGDTGGGGSVTERSALQDASNG back to topmRNA from alignment at Scaffold_161:335703..335957- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1018_8a-0001 ID=EsuBft1018_8a-0001|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=255bp|location=Sequence derived from alignment at Scaffold_161:335703..335957- (Ectocarpus subulatus male Bft15b)
ATGAGGAGCTTTTCCGAGATACTCGAGCAAACCATACACGAGTGGCCGAA
TGTGCCGGACGAGACGTACTGGGCCTTGGTGTCCCTGCCCTTCCTGACCC
TAGTGGTATGCTGCGTCTGGCTGCGAGTGGTGTGGCCTTGCCCGACTCAC
GACAATAACCTGAAGGACTTCACCCCTGCGACGCTGCTCGGCGACACCGG
CGGCGGCGGCAGCGTCACCGAGAGGAGCGCGCTGCAAGACGCCTCCAATG
GGTGA back to topCoding sequence (CDS) from alignment at Scaffold_161:335703..335957- >EsuBft1018_8a-0001 ID=EsuBft1018_8a-0001|Name=EsuBft1018_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_161:335703..335957- (Ectocarpus subulatus male Bft15b)
ATGAGGAGCTTTTCCGAGATACTCGAGCAAACCATACACGAGTGGCCGAA
TGTGCCGGACGAGACGTACTGGGCCTTGGTGTCCCTGCCCTTCCTGACCC
TAGTGGTATGCTGCGTCTGGCTGCGAGTGGTGTGGCCTTGCCCGACTCAC
GACAATAACCTGAAGGACTTCACCCCTGCGACGCTGCTCGGCGACACCGG
CGGCGGCGGCAGCGTCACCGAGAGGAGCGCGCTGCAAGACGCCTCCAATG
GGTGA back to top
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