EsuBft1017_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1017_12a-0001
Unique NameEsuBft1017_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_189contigScaffold_189:562919..563168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1017_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length25
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_12aEsuBft1017_12aEctocarpus subulatus male Bft15bgeneScaffold_189 562919..563168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_12a-0001-exonEsuBft1017_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_189 562919..563168 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_12a-0001-exonagat-three_prime_utr-175Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_189 562919..562991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_12a-0001-cdsEsuBft1017_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_189 562992..563168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1017_12a-0001EsuBft1017_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_189 562992..563168 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1017_12a-0001 ID=EsuBft1017_12a-0001|Name=EsuBft1017_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=250bp|location=Sequence derived from alignment at Scaffold_189:562919..563168- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGTAACGGAGCAAACAGGACAAAGAGGCGTCAGATGGGCAGAGAG
CCAGACGTACAATAACAAAAGCAACAGCAAAAGCAAGATCAAGGTACCCA
ACACAGCAACACAGCAGAGTCGGCACGGAGGTCATAAAAAAAGAAAGGAA
CACAGCACAGCGGCCGAAGGCATATAAGAAAGCGACTAATCATCAGAAAT
ATCTCGGAAACACGCATAGTGCTACAGTAGTCTAGTAGTCACCAGCGAAC
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protein sequence of EsuBft1017_12a-0001

>EsuBft1017_12 ID=EsuBft1017_12|Name=EsuBft1017_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MGVTEQTGQRGVRWAESQTYNNKSNSKSKIKVPNTATQQSRHGGHKKRKE
HSTAAEGI
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mRNA from alignment at Scaffold_189:562919..563168-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1017_12a-0001 ID=EsuBft1017_12a-0001|Name=EsuBft1017_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=250bp|location=Sequence derived from alignment at Scaffold_189:562919..563168- (Ectocarpus subulatus male Bft15b)
ATGGGAGTAACGGAGCAAACAGGACAAAGAGGCGTCAGATGGGCAGAGAG
CCAGACGTACAATAACAAAAGCAACAGCAAAAGCAAGATCAAGGTACCCA
ACACAGCAACACAGCAGAGTCGGCACGGAGGTCATAAAAAAAGAAAGGAA
CACAGCACAGCGGCCGAAGGCATATAAGAAAGCGACTAATCATCAGAAAT
ATCTCGGAAACACGCATAGTGCTACAGTAGTCTAGTAGTCACCAGCGAAC
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Coding sequence (CDS) from alignment at Scaffold_189:562919..563168-

>EsuBft1017_12a-0001 ID=EsuBft1017_12a-0001|Name=EsuBft1017_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=177bp|location=Sequence derived from alignment at Scaffold_189:562919..563168- (Ectocarpus subulatus male Bft15b)
ATGGGAGTAACGGAGCAAACAGGACAAAGAGGCGTCAGATGGGCAGAGAG
CCAGACGTACAATAACAAAAGCAACAGCAAAAGCAAGATCAAGGTACCCA
ACACAGCAACACAGCAGAGTCGGCACGGAGGTCATAAAAAAAGAAAGGAA
CACAGCACAGCGGCCGAAGGCATATAA
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