EsuBft1015_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1015_5a-0001
Unique NameEsuBft1015_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_544contigScaffold_544:301605..307277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1015_5
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length141
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_5aEsuBft1015_5aEctocarpus subulatus male Bft15bgeneScaffold_544 301605..307277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_5a-0001EsuBft1015_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_544 302632..307248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_5a-0001-exonagat-exon-13104Ectocarpus subulatus male Bft15bexonScaffold_544 301605..301646 -
EsuBft1015_5a-0001-exonagat-exon-13106Ectocarpus subulatus male Bft15bexonScaffold_544 301946..302874 -
EsuBft1015_5a-0001-exonEsuBft1015_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_544 304708..304898 -
EsuBft1015_5a-0001-exonagat-exon-13105Ectocarpus subulatus male Bft15bexonScaffold_544 305678..305900 -
EsuBft1015_5a-0001-exonagat-exon-13107Ectocarpus subulatus male Bft15bexonScaffold_544 307246..307277 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_5a-0001-exonagat-three_prime_utr-160Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 301605..301646 -
EsuBft1015_5a-0001-exonagat-three_prime_utr-161Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_544 301946..302631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_5a-0001-cdsEsuBft1015_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_544 302632..302874 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1015_5a-0001-exonagat-five_prime_utr-97Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_544 307249..307277 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1015_5a-0001 ID=EsuBft1015_5a-0001|Name=EsuBft1015_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1417bp|location=Sequence derived from alignment at Scaffold_544:301605..307277- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGCCGCCTGGCCAAAGCCGAAGGCCTGATGTTCGCTTCCCAATCGGAT
CTTGGCAAGGCGAAGGCCGAACCAGAAAACAAGAAGACGGCGTTTAAAAG
CGCCGCCTTCCACCTCATTTTGCCGTTCATGGCATACTTCAAGGGCATCT
GCCTGACGACGATCGACTGCAGGGAGCACAGCCTGCTGAAGATGGTTGGG
TACATGTGGGGTGAATGGGACCAGGAGCGACCCATCACCCAGACCGAGCT
CTCGAAGGAGGTTGCCGTTTTCGTAGCGCCCATGAAGTCGACGACGTGGC
GCGTAACACGGGCCGCGCTCCGCACAAGCATGTTGGCCATGCTAAAGAAG
GTCACCCACGATCACACGGAGGACGATGGCTCGCCAGGACGTGAGATCAC
GTCGGCCTACATTGCAGATACAATGACCACCCAAATGGAGCGGCAGATTC
TGCAGCCGACGATGGAGGTAGCTTTACAGGAGATGGAGCTGTACGTCTCC
CGGGATGTCATCAACGCCAGGAGGCTAACGCCAGGCCATAAAACCTCGGA
CAAGACCGACCCCGACAAGTACCGCACCTTCCCCGTGGTCAAAGAATTCC
TGGAGAAGGCCTTTGGTGGAAAGCACAGCGGCGGCGACAAGTACCATGTC
ATCCGCGAAACGTATGTTGCTATTGTTTCGATAACCTGACTGTAACTCTG
TGACACTGGCGTATTTATCAACCCATCCCTGCCTCCCGCGGCGTTCGTAA
GTTTATTTGTCTGCACAACAGCGGTCCTGCAAGGTCTGCCCCAAAGTTTT
TACGATTGGTTACTTCTTCTGTGGCTTGTCTCCCGCTCAAGTGTTCATTA
TTTCGCCGCAGGTTTAGGGGGGGCTGTAGCCGCTCCTATGCATGAGTCGA
GACGCATTTGGTTGACAAAAGGTTTTTGAGTGATGAATCTCCCGCACGTT
TATAAACTGGCGGTATAATCGTTGTTCTTATATCAGCTTCTGGGCCAAGT
ACATGGAATTCGGTGAGGAATACCTTGGCGACATCCCCGAGCCCGACAGC
ATTCGAAGTGCGGAGGATGCGAGGCGCTACCTCAAGCCATACCTATTCGA
GGACAAGGGAGAGGGCGGAGGGTCGCAGGGGAACCGGCGAAGGGGGTCCC
AGGAAAACGGGGGCGGAGGTTCCCAGGAGAACGGGGCCAGAGGGTCCCAG
GAAAACGGGAGCGGAAGGTCCCAGGAGAACGGGGGTGGAGGCGGGGATGA
AGACTGGGGTGGAGGCACCGACAAAGACGGAGACGGGGATGGTTCATCTC
CGGGTCAGAACAGGGGTGGTAATCGTGACGACGCGGAGTCCGAATCCTCG
GTGGAACTCTAAGCCGTGTGCCAAGGTCCAGTCGCCCGGATTTCCACTGC
TTCGTCGTGTAACGCAT
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protein sequence of EsuBft1015_5a-0001

>EsuBft1015_5 ID=EsuBft1015_5|Name=EsuBft1015_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=219bp
MFASQSDLGKAKAEPENKKTAFKSAAFHLILPFMAYFKGICLTTIDCREH
SLLKMVGYMWGEWDQERPITQTELSKEVAVFVAPMKSTTWRVTRAALRTS
MLAMLKKVTHDHTEDDGSPGREITSAYIADTMTTQMERQILQPTMEVALQ
EMELYVSRDVINARRLTPGHKTSDKTDPDKYRTFPVVKEFLEKAFGGKHS
GGDKYHVIRETYVAIVSIT
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mRNA from alignment at Scaffold_544:301605..307277-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1015_5a-0001 ID=EsuBft1015_5a-0001|Name=EsuBft1015_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5673bp|location=Sequence derived from alignment at Scaffold_544:301605..307277- (Ectocarpus subulatus male Bft15b)
TTTGCCGCCTGGCCAAAGCCGAAGGCCTGATGGTGAGAGACTACACGTCA
AAGCATCCAACCAATCCGAAGCGTTTGACGGAGAAAGGAGCCACAACCAA
TTTACGGTCCTGAGACGTGTACACCTATAGGTGGTCGGACGAGGGTATTT
TCGAACGTAGATGTCGGATACGAAAGCCCCCCNCAAGAGACTACACGTCA
AAGCATCCAACCAATCCGAAGCGTTTGACGGAGAAAGGAGCCACAAGCAA
TTTACGGTCCTGAGACGTGTACATCTCTAGGTGGTCGGACGAGGGTATCT
TCGAACGTAGATGTCGGATACGAAAGCCCCCCGCACGTGGGCGTCGGGAA
TTCATTTCCAAACCTTTGATTGAATCACCGTACACACACAAGCCACTCTC
AGGTTGGAAGTTCGTGATCCCTGCGCGTTCGATTCATATCTCTCGACGAA
ATATTTGACAGCTTTGTCGGAGTTACCCGCGACCAAGAGTTTGTATTGTA
CACAAGCGTGCACCTACAGATTTTATTGCTGTGNTATTTTACTGAATCAT
GTCAAACCAACAAGCCACTCAGGTTGGAAGTTCGTGATCCCTGCGCGTTC
GATTTATATGTCTCGACGAAATTTTTGACAGTTTTGTTCTATTAGTTACC
CGCGACCAAGAGTTTGTACTGTACACAAGCGTGCACCTACATATTTTATT
GCTGTTAACGAACAAGTATCCTTTCCACAACTCAAAACTGATCCACAAGG
ATATTCGGGGTGTGCTTGAAAAGATTCCGAAGGCAAGGTCAGGGGTCGCG
CGCAGGTTCTGCCGCCACCTCTCGGGGTTCCCTACTAAGCCCGGATGACA
TGCACACACATTAAAGTATCGGACAGCATCAGCGGAAATATCTCAGCATG
CATCCCGGGAAATCTGTTTCATGTCCGCGCCCCAGTCACAATGCAGCCGC
ATAAAACTCCGGAATGGCCATTCAATATGCCCCCACCCCACCCCACCCCT
CCCACCCGAAAAAGTTCAAAATTACGCACACGCACGTGCTTTCTTCGATG
CACTGAGCTCACGTATCTCTTGTATTTTGCTCGCGTACACCCCTGGTCAG
GATGTTAACTTCTTTCAGCAATGCCACTTCCATTGATTACTACAACAATG
CAACCACCTCACGCCCTGCCGCTTTTGCATGTTTTCGCTCCAGTTCGCTT
CCCAATCGGATCTTGGCAAGGCGAAGGCCGAACCAGAAAACAAGAAGACG
GCGTTTAAAAGCGCCGCCTTCCACCTCATTTTGCCGTTNTAACTTCTTTC
AGCAATGCCACTTCCATTGATTACTACAACAATGCAACCACCTCACGCCC
TGCCGCTTTTGCATGTTTTCGCTCCAGTTCGCTTCCCAATCGGATCTTGG
CAAGGCGAAGGCCGAACCAGAAAACAAGAAGACGGCGTTTAAAAGCGCCG
CCTTCCACCTCATTTTGCCGTTCATGGCATACTTCAAGGGCATCTGCCTG
ACGACGATCGACTGCAGGGAGCACAGCCTGCTGAAGATGGTTGGGTACAT
GTGGGGTGAATGGGACCAGGAGCGACCCATCACCCAGACCGAGCTCTCGA
GTAAGTTCCGATTCGCCATGATTTCGGCCCTGCGCTTTTTCGTCAAGCTC
CACCACCTGGTAAACCTCCTCAACCGTGTTGTTGAACGTCCTTTCCTCGT
GCCTTGTGTCGCACCCTGGTGCCATGTTGCAAGCAGGCGACGAGCGATGT
TCCGTACATATTACGTAGGCCTTAGTAGCAGGTTCTATGCAGCGAGTGGT
CGTGGGTTTTGTTGCAACAAGTGTCTATGGCATGGCAAGGACGACAGAGT
AAAGTTTCCATCCTTGGTAGTGGCTCATGCGGTACCAGGCTATCTCCTAC
TGTCGTCCAGCCTTGCGTTTCCAAATAAATACAGTGCACTACATCGCCCC
ACCTAACGTGGGGGTAGGTATCGCTCGTACGTTGTGTACTTCGGTCGTGT
ACGGTACGTGTGGCAACCACCAGATGAAAACACCAGGTAACCCCGCGCGA
ACCGCGCTTGCCGCGCACACGTACATGAATGAGTGGTGCTCCACTGAGAC
TGTCGCCACATGAAAAGGGGGATCGTGTGCACCTCTTTATGGCTTGTCCT
AAATTGATCAGTCTTGAATTATTTCGGGTCGCTAAGGTCGCACAGCGGAG
ACACAACTAAATCATGCCGTTCTTGTTATTTTCCGTATTTCGGTGCCATC
TCTCCGACTCGTACAGCATAACGCCTCCTGCAGCAGGCCGTAAGCTTTCA
ACTGCGCTCACCAACTCCACCCACCCCCCTCGCACTCGGACTCACCCGTC
CGGTATGGGATCGGACACCTCGATTCCAGAGGAGGTTGCCGTTTTCGTAG
CGCCCATGAAGTCGACGACGTGGCGCGTAACACGGGCCGCGCTCCGCACA
AGCATGTTGGCCATGCTAAAGAAGGTCACCCACGATCACACGGAGGACGA
TGGCTCGCCAGGACGTGAGATCACGTCGGCCTACATTGCAGATACAATGA
CCACCCAAATGGAGCGGCAGGTGGGATGCATGCATGCAGGTCGGGCAGTT
TTCGCTTTGACACTTGCTTGTATTACGAGAACAGCGCGTTCAACTAGCGT
CGTGGGACTAAGGTTGCCCGATCCATTGGGGGATGCGGAGTGACATACTT
GAGAATTCCAAAAACCTAGGGTGGTTCGTCTCGTTGTGGGAGGTTTGGTG
TCATGGCTTTTGGTTTGTTTTATACGCCGTCGCGTCGGGCCCGATGTCGT
CATGTAGTTATCGGTGTCGCACCCACCCCACGATAACTCGTATTCGCCCC
GGTNGTACTTGAGAATGCCAGAACTCTAGGGTGGTTGGTTCGTCTCGTTG
AGGGGAGGTTTGGTGTCATGGCTTTTGGTTTGTTTCATACGCCGTCGCGT
CGGGCCCGATGTCATCATGTAGTTGTCGGTGTCGCATCCACCCCACGATA
ACTCGTCTTCTCCCCGGTGGAGATCGTGTTCACGAAAAGTAGAGCCCCCC
CCCCCCCCGCCGTATATTTTTCGTCAGAATATGCGTTTTCTTCGAGATTA
TCTATTGTTGACGGGATATTGATGCTGTTGTCTGGTTCGGTCTCAAGATT
CTTCGGTCTTGGGGCATCAGGTCACGGGCGGTATAACTTTGCTGATTCTA
TTTTCCGGAAATGAACCAATTTCGGGGCTCCAAGGCTGCGGTAAGCCCCG
CGCATGTGCGCATAACAGAAAGTCGGAAAAAACACGCCACCCAACGTTCG
TTAAGCCCGCCATGCTCTCTTGATCACTTTCGTACTTTTGGGGTTGATAT
CTTGACCGGATTGGACCAAGGATCTGGTTTCCCTTTGTAACGCTCGCTCG
TTTTTCCACTGCGTCTGTTGCATTTTCTCTTCTTCCCGGTTCCCGTCATG
GCAGTTCCGTTGTGGGTAATGTAACAGACAAAACGACTCGGCCTCCTGCT
CTTCGGTATTGTGTACGGCACGGAGGTCATCTGAAACGCAACAAGCATCT
CCTCCCCGTGTGCACGACACGGGCGATTACGGCATATCCTACACCCGGCT
TCGCCCTTACCATGGACCACCCCCACCTACCCCCTTTCGCCACCTCCGAA
TGAGTTGCCTTTCACCACCTGTTGACTTCCCGTCCTCCGCCCACTCTATC
TCTACAGCCGGAGGCCGCCATGCGCGGCCTCGGGACCGCCATGTTCTCAA
AGGGTCTAGGCCCCGCAAAACACGGCGTTCCCGTAGCGAAGGACGAGACC
ATGAAAACGATGTCCTCCTACGAGGTGTACAGTTGCCCTGGCTCCGCACC
TTGGCACCAGGTATTGCCTGCCCCGCTTCTCAGACTCTTGGCAGTAGGAT
TATGAACGAGCGCATGCAACTATTCCTTGCAATGTATGTGTAGACCGATG
AAGACTAATGTTGATGCACGCGACCTCTGTTGGGTTGTGACTGTGTCTTT
ATCGGAAGCGCTTATCGAGCGGGCCTACAGTGCAGCAATCCAAAGTGTCA
TTGCGAAGCTACATACGATGTGCATCACCATGTCATTAGTATATTGAACC
GTTTCGCTCTCCGCCCTTTCGCGCTATTGTACCACTTCTTCGACCCTCAA
ACTAGCTCCCGTGGTATTTGGTGCATTTGGTCCAATACCCACGTGTGCCA
TCACGTCGTGATAACTGCTGCTGTCCATATTCGCTCCGCCCCTTTTTGTG
TCCCTGCGCGTTTCCAGCTCACCAACCCCTAAATTTACTCTGGTGCATCC
AACAATCTAGCGTATTTCCCGCTAAGCACCACGACCCCCCCCCCCCCCCC
CCNCCCCCCCCCCCCCCCCAAACGCGGCGACATGGACTGATCATCTTTCG
AAGATTCTGCAGCCGACGATGGAGGTAGCTTTACAGGAGATGGAGCTGTA
CGTCTCCCGGGATGTCATCAACGCCAGGAGGCTAACGCCAGGCCATAAAA
CCTCGGACAAGACCGACCCCGACAAGTACCGCACCTTCCCCGTGGTCAAA
GAATTCCTGGAGAAGGCCTTTGGTGGAAAGCACAGCGGCGGCGACAAGTA
CCATGTCATCCGCGAAACGTATGTTGCTATTGTTTCGATAACCTGACTGT
AACTCTGTGACACTGGCGTATTTATCAACCCATCCCTGCCTCCCGCGGCG
TTCGTAAGTTTATTTGTCTGCACAACAGCGGTCCTGCAAGGTCTGCCCCA
AAGTTTTTACGATTGGTTACTTCTTCTGTGGCTTGTCTCCCGCTCAAGTG
TTCATTATTTCGCCGCAGGTTTAGGGGGGGCTGTAGCCGCTCCTATGCAT
GAGTCGAGACGCATTTGGTTGACAAAAGGTTTTTGAGTGATGAATCTCCC
GCACGTTTATAAACTGGCGGTATAATCGTTGTTCTTATATCAGCTTCTGG
GCCAAGTACATGGAATTCGGTGAGGAATACCTTGGCGACATCCCCGAGCC
CGACAGCATTCGAAGTGCGGAGGATGCGAGGCGCTACCTCAAGCCATACC
TATTCGAGGACAAGGGAGAGGGCGGAGGGTCGCAGGGGAACCGGCGAAGG
GGGTCCCAGGAAAACGGGGGCGGAGGTTCCCAGGAGAACGGGGCCAGAGG
GTCCCAGGAAAACGGGAGCGGAAGGTCCCAGGAGAACGGGGGTGGAGGCG
GGGATGAAGACTGGGGTGGAGGCACCGACAAAGACGGAGACGGGGATGGT
TCATCTCCGGGTCAGAACAGGGGTGGTAATCGTGACGACGCGGAGTCCGA
ATCCTCGGTGGAACTCTAAGCCGTGTGCCAAGGTGTGTTTCGGCCTGGTA
TATGTTTCGTACCCTCTTTGAAACGCGCCCCTTCCCTCCCTCTGCCTGCG
ATGACATTGGGTGGTTGCGTGTGTTTTTTCGGACTTTTTGTCTTGCACGC
GGTGCCCCTCACACTCTCTCCCCCATTACAAGGTGCCTGTTCGCCCTCGG
GATTTTTTTTTTACAAGATTACCTAGCCCGCCTTCAGTTCTACAGACTTG
CGTAGATCGCTCCGTGGTTTTCCACTACCCGCCTTTGCCTGACACTTGAA
TCAAATTTCTCTTCCGGTCGTTAACCTCCAGGTCCAGTCGCCCGGATTTC
CACTGCTTCGTCGTGTAACGCAT
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Coding sequence (CDS) from alignment at Scaffold_544:301605..307277-

>EsuBft1015_5a-0001 ID=EsuBft1015_5a-0001|Name=EsuBft1015_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_544:301605..307277- (Ectocarpus subulatus male Bft15b)
ATGTTCGCTTCCCAATCGGATCTTGGCAAGGCGAAGGCCGAACCAGAAAA
CAAGAAGACGGCGTTTAAAAGCGCCGCCTTCCACCTCATTTTGCCGTTCA
TGGCATACTTCAAGGGCATCTGCCTGACGACGATCGACTGCAGGGAGCAC
AGCCTGCTGAAGATGGTTGGGTACATGTGGGGTGAATGGGACCAGGAGCG
ACCCATCACCCAGACCGAGCTCTCGAAGGAGGTTGCCGTTTTCGTAGCGC
CCATGAAGTCGACGACGTGGCGCGTAACACGGGCCGCGCTCCGCACAAGC
ATGTTGGCCATGCTAAAGAAGGTCACCCACGATCACACGGAGGACGATGG
CTCGCCAGGACGTGAGATCACGTCGGCCTACATTGCAGATACAATGACCA
CCCAAATGGAGCGGCAGATTCTGCAGCCGACGATGGAGGTAGCTTTACAG
GAGATGGAGCTGTACGTCTCCCGGGATGTCATCAACGCCAGGAGGCTAAC
GCCAGGCCATAAAACCTCGGACAAGACCGACCCCGACAAGTACCGCACCT
TCCCCGTGGTCAAAGAATTCCTGGAGAAGGCCTTTGGTGGAAAGCACAGC
GGCGGCGACAAGTACCATGTCATCCGCGAAACGTATGTTGCTATTGTTTC
GATAACCTGA
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