EsuBft1015_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1015_2a-0001
Unique Name	EsuBft1015_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D8LDH4
ProteomeId	EsuBft1015_2
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	PTHR12297
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR007667
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Note	hig1 domain family member mitochondrial os:homo sapiens gn:higd2a pe:1 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1231
Hectar predicted targeting category	other localisation
Evalue	5.19e-78
EggNOG OGs	KOG4431@1\|root,KOG4431@2759\|Eukaryota
Ec32 ortholog description	Hypoxia induced protein, domain
Ec32 ortholog	Ec-15_000600.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	HIGD1B
GOs	GO:0001666,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0007610,GO:0008150,GO:0008152,GO:0008535,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010562,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010821,GO:0010823,GO:0010941,GO:0016020,GO:0016021,GO:0016043,GO:0016567,GO:0016740,GO:0017004,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019866,GO:0019941,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0030534,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032592,GO:0032991,GO:0033043,GO:0033108,GO:0033554,GO:0033617,GO:0033674,GO:0034622,GO:0036211,GO:0036293,GO:0036294,GO:0042149,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042594,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045471,GO:0045859,GO:0045860,GO:0045937,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0060255,GO:0060548,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070647,GO:0070887,GO:0071453,GO:0071456,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090199,GO:0090201,GO:0097249,GO:0097250,GO:0097305,GO:0098573,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234
Description	mitochondrial respiratory chain supercomplex assembly
COG category	O

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_544:344570..348127-
coding sequence from alignment at Scaffold_544:344570..348127-

spliced messenger RNA

>EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1231bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCTGTTTGTTTGAAACCGGAGTTGTGCGCTCGCTGTGGTACAAACTATTC
TATCATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGG
CGGTGAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACA
GTGGGATTCTTGGTGTCAGGAATCTACTCTTTCAAGCAGGGCAACAAGCA
GCTTTCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTTACGA
TTCTGGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGATGACC
AGGCAGACGGTGGAGGGAAAAATGGACGCTATAAGCAAGCAGACCAACCG
GTGGTCTGGGGTACCGCCCCCAACCGCCCAGGCCAAAGCGGTAGCAATAG
AGGACGGCCGACAGTGAATCTGTTCGTAGCGCGTTTTGACCGTAGTCCCG
GTACCGGCAGATATTGTTCATGTGGTAGGATAAGGGCGGGGACGTGGCTC
AGGATGCCTTTGTACCTCAGACATGATGAACGTTGGCTTTTTTTTTGTGA
CTGCACACCGGGGCATTGTTTCTTCTTTTCCCTGGCGTCGTTTGTTTTTG
ACAACGGACGCGCGTTTAGGCGGCGCTGTGACTGAGGAAACCCCGTACTA
CCGGTGCAGGCGAATCTTGTTCAACGGTAGGTTTTAGATAGCGGCGGCGA
CATTGCTCAGGATGTCCTTTTACCTCAGGCATGGTGGACATTGAGTACTA
TTTTTCTTGTGGCACACCGGGCTATTGCTTCTTCCTTCACGCGACTTGTT
TTGGACAACGGATGGACGTTTTGGTGGCATCTCGTCTCGTTGTAACCGCG
CAGCGGCACCTGTGTGTGTTTGTGTGCATTTTTTTTTGCTTCGCTGGCGA
GTGGACCCTCACATCCTTCATGCATGCAGGTGCCAAAGCTGTGCGATGTT
GAATAGTTTTTCTAATATAATGGGGGCACGTGGTGCGTCATGTATATTTT
TGAGGCTTTCGAATCATGGTCTGTGAGGCCAGATCGGTAGATTATTTTTT
TCTTCCGAAGATACATGTCGGGTTCCGATTTTCAACAACACGAAATAGCA
GTTGAAAGAAAACGTTTAGTCTAATTCTCAAGTAACTTTATTGGTAAAAA
ATACCCCAGTTTCGTGTAACCTTCCTCCCGATGATTTGTGCTGGGTAAGT
GACACAACAGGGTAGTATACCATACATACCT

protein sequence of EsuBft1015_2a-0001

>EsuBft1015_2 ID=EsuBft1015_2|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MVTMDERAPSFFEKLAVKGKKEPLVPIGALATVGFLVSGIYSFKQGNKQL
SQKLMRGRVVAQGFTILVMTAGFFMAGPPEMTRQTVEGKMDAISKQTNRW
SGVPPPTAQAKAVAIEDGRQ

mRNA from alignment at Scaffold_544:344570..348127-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3558bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)
GCTGTTTGTTTGAAACCGGAGTTGTGCGCTCGCTGTGGTACAAACTATTC
TATCATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGG
CGGTGAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACA
GTGGGATTCTTGGTGTCAGGTATGGCAATCAGTGTTTTCCAAAAGCAGCA
TGCTTCGCCCCCAACACAGCAAAGCGTCAGCAGAGATGTAGCACACGTCG
AGACACATTTGTCAGTTACCTTCAATAGTGAAGGCACGGGGAAGGAGAGG
TTGTAAGTTCCCTGTATTCCTAGCATTAAGGTATCTACACACGGCTGGTA
CACTCCGCTGCCCGGCGTTCCAACCGGCCCCTTGACTCGTACCTTACCAG
CGGAAGAGGAGGTTCTGTTGCTATATTGCTAATACTCTGGCTGTCGAACT
CTCGTTGAAGGCGGACTCTGGCCTGAGGTTGCCGCCCGTTCTTGTTTTTT
TCTAATCGCCAACATATCGGAGTTCGACGAGGCACCCGTTTTTGGTCTCT
GCGCTGCCAGCAGCCGGTCAAACAGAACACGAGCAGCCGCCAGCAGCAGC
AGCCAGCACAACCCTTGAGGGCTCAGTAGCACACGCTTTGCGAACTACCG
CCCGTCGTGCAAACCATAACTATCGCGTAAAAAGTGAACCTTAGCAGGAT
GGGCCTGTGTTCTGGTAGAGCACAGCCGTATTCGTGAAACAGCGAAATGA
TGCTGCGGTGGTAGACTACAGAAGTACGATAGTTGATACTGCGATGTCCC
CTGCCTGAATATTACAAAAGAAGTAGAACTACAAACATGCAACGTCACCG
TCAGGTCCCCATAGCTGACGCGCTTCTCCCCTTAGCATGGCCAAATCATT
CGTTTTTTCTGGAAGTCTAGGCTTTTCTGAGTTAAGGCGAAAGAACAGAT
GCTCGCGGAGGGACTTCGATCGTATCTACGCTGTAGTCTGCGCAGGTTTA
GCTGAGTAATACAGAATCGGAAAAGTTGGGGTTAGGGCTATAGGTAAAGG
GTGCATACGATTTCATTACTTCCCCAAGGGGCAATCGCTCCTCGTGCGAT
TGTGGATACCCTGTGGATCGCATTGTTCGTGGTTTGGTGCAGCATTTAGA
TACATCTTGACGTTAGGAGTAAAGCTTCTGACCACCTCGCCGCATGGGAT
TGTGGTTCCCTGCCACTCCCCATTTGACCTTGGTTGTGTGTGTTTTGTGG
TCATCTTGTGCCTTGATGCTTGCCTTGTTTTCTTGTAGGGGTACAGTCAT
CTCTCGGTTAAGGGCACCATTTTTAAGGACACTCCCCTGTCAAGGACAAC
CTTTTTTTCACAGGCATGGTGGCCCGCAGAATGTAGATAGAACATAAGGA
GGGATATCAACCTGGAGGACACTTTCCCCGGCTTTAGAACAGATTTACCT
GTTTCAACGAAGAACCATGTATGTCCTTAACGGAGAGGGTTGTTAGCTAC
GACATATGCATATAGCTGGCCAATGAGAATCGTCAGTTCTAGAGTAAGTA
GCACACAGCGTCCGTGGCAGAGGGGGCCCAGTGTAGCGCAAAGGAAAGCA
TCGCCACGCCGGTTGTGCCTCCTGTTTCTGGCGAGGCGATGGTCGAATAT
CCCTGCAATTGGTGGCTCGTGTGGTCACTTTCTCTCGTGCCCATCCATTG
CGTACTCCGTATATCTCCGTCACCTTTGTCTCCCGTGATATGTGTGGCAT
GCGTCTCCCCTCCTGTTTTTCCAACGATATTTTTCTGTTCCGGTTGTGGC
CGTCGTTGAACTCGGTTCATCAGATAAAAAGGCTGAGTAATTTGTCTCTT
CTTTTTTTTGCCTGCTACATTGAACCGACGCAAGCATCCCGCGTGTGTAC
TGCTCCATGCTGTCGGGTCGCAGGAATCTACTCTTTCAAGCAGGGCAACA
AGCAGCTTTCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTT
ACGATTCTGGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGGT
ACGCAACAGGAATCGACTTTTTCTGTCACTCTTGTGGGTACCTCTTGGCT
GTCTCTCTCTGGGTTTTATGAAATTCTTCATGGCCGGGCGCCCACGCGCG
TGATGCGAGGGCAAGTCGACTTGACTGCCAAGTTAAGCAGGGTTTGCCAA
CACAGGCGTTGGCTGTCGTGTTCCCATGTGTACAAGTCGTGCGACCCGAA
ACAGGTAGCAGCCACGCACTCCATGCTACCGATAAATTGGATGTCGGGAG
TCACCTATCAGGTTTTTGTTTTGTGTTGTTTGGTGATCCTGTGTGCCAAT
TTGTTGACCATGTTGCCATCCGAACGGCTTCCCTCCTCCTTCCACCTTGG
TGTGCGTGTTGCGCTGTCCCTTCACCCAAAACATGATGTGGAGATACACC
ATGTCTCGGATGTTGTCCGTCAGAGTACCCCAGCAATCCTGGTGAGGGTA
GGTGTTCTCCTTCTCGACTGCGATGCATTGAAGTGACAAGGTGGCGTCAA
GCACCACGCAAGTAACCCCCTCCCCCCCTCCCCTCCCGCTTCGCTGACCG
GACGGTTTGTTGACTCGAAAGATGACCAGGCAGACGGTGGAGGGAAAAAT
GGACGCTATAAGCAAGCAGACCAACCGGTGGTCTGGGGTACCGCCCCCAA
CCGCCCAGGCCAAAGCGGTAGCAATAGAGGACGGCCGACAGTGAATCTGT
TCGTAGCGCGTTTTGACCGTAGTCCCGGTACCGGCAGATATTGTTCATGT
GGTAGGATAAGGGCGGGGACGTGGCTCAGGATGCCTTTGTACCTCAGACA
TGATGAACGTTGGCTTTTTTTTTGTGACTGCACACCGGGGCATTGTTTCT
TCTTTTCCCTGGCGTCGTTTGTTTTTGACAACGGACGCGCGTTTAGGCGG
CGCTGTGACTGAGGAAACCCCGTACTACCGGTGCAGGCGAATCTTGTTCA
ACGGTAGGTTTTAGATAGCGGCGGCGACATTGCTCAGGATGTCCTTTTAC
CTCAGGCATGGTGGACATTGAGTACTATTTTTCTTGTGGCACACCGGGCT
ATTGCTTCTTCCTTCACGCGACTTGTTTTGGACAACGGATGGACGTTTTG
GTGGCATCTCGTCTCGTTGTAACCGCGCAGCGGCACCTGTGTGTGTTTGT
GTGCATTTTTTTTTGCTTCGCTGGCGAGTGGACCCTCACATCCTTCATGC
ATGCAGGTGCCAAAGCTGTGCGATGTTGAATAGTTTTTCTAATATAATGG
GGGCACGTGGTGCGTCATGTATATTTTTGAGGCTTTCGAATCATGGTCTG
TGAGGCCAGATCGGTAGATTATTTTTTTCTTCCGAAGATACATGTCGGGT
TCCGATTTTCAACAACACGAAATAGCAGTTGAAAGAAAACGTTTAGTCTA
ATTCTCAAGTAACTTTATTGGTAAAAAATACCCCAGTTTCGTGTAACCTT
CCTCCCGATGATTTGTGCTGGGTAAGTGACACAACAGGGTAGTATACCAT
ACATACCT

Coding sequence (CDS) from alignment at Scaffold_544:344570..348127-

>EsuBft1015_2a-0001 ID=EsuBft1015_2a-0001|Name=EsuBft1015_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_544:344570..348127- (Ectocarpus subulatus male Bft15b)
ATGGTGACAATGGACGAGCGAGCACCCTCTTTCTTTGAGAAGTTGGCGGT
GAAGGGGAAAAAGGAGCCTCTGGTGCCGATCGGGGCCTTAGCGACAGTGG
GATTCTTGGTGTCAGGAATCTACTCTTTCAAGCAGGGCAACAAGCAGCTT
TCGCAGAAGCTTATGAGGGGCCGGGTGGTCGCACAGGGATTTACGATTCT
GGTAATGACGGCGGGGTTCTTCATGGCGGGGCCACCGGAGATGACCAGGC
AGACGGTGGAGGGAAAAATGGACGCTATAAGCAAGCAGACCAACCGGTGG
TCTGGGGTACCGCCCCCAACCGCCCAGGCCAAAGCGGTAGCAATAGAGGA
CGGCCGACAGTGA