EsuBft1014_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1014_7a-0001
Unique NameEsuBft1014_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_119contigScaffold_119:182993..184550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1014_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length117
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_7aEsuBft1014_7aEctocarpus subulatus male Bft15bgeneScaffold_119 182993..184550 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_7a-0001-exonEsuBft1014_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_119 182993..183048 +
EsuBft1014_7a-0001-exonagat-exon-30571Ectocarpus subulatus male Bft15bexonScaffold_119 183431..184550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_7a-0001-cdsEsuBft1014_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_119 182993..183048 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_7a-0001-exonagat-three_prime_utr-154Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_119 183504..184550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1014_7a-0001EsuBft1014_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_119 182993..183503 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1014_7a-0001 ID=EsuBft1014_7a-0001|Name=EsuBft1014_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1176bp|location=Sequence derived from alignment at Scaffold_119:182993..184550+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGTAAGAGAACGGAGGCCCAGCACCGGACAACCATGCGCGGCGC
GCCCCGGGCATGCAACAACGTCTGTCTGGACGACACGACGTACCCGACGT
GGAAAATCGGGTCCTCGGGTACCGTTTAAAGGGCCATGGGCGGGTCGTGG
GATGCATACTTCGCGGCTGCCGTTCAGACTCTCTTTCTGTTCATCGTTCG
GTGCATAGCTGGTGCCCTACAAGAGCTGCGCACGAGACGGTATGAACTCC
TTGCAGGGCTGGTTGTTGGCGCTCTTGTATTCCCGGGAGCGACAGCCCAT
ACGTTTATACCCTTTTGGTCGTGGACCCTCCAGTGGGCCCTCCAGGTCTG
CGGACATTGGTGGTGGTTGTGTGCGAAGTTGGACCCGGCGATCTCGGTCT
CTGTCGGTTCGATGTGTTTTGCGCCGCTGCTACGTCGTGAAATCTACCGC
CGGAACATGCGATTGATGTCGGTCATCGAGTACGTCATTGAAGGCCCCAT
CCACATGCTACTGGTGTCACCCTATCTCCGTCGAGGAGTGTTGTGGCTGG
TGCAAGCACTGTGTATCTGGGCCATGTTGGTTTCGATGCTCCGTGTTCAA
GTTCGGGAGTGGCTGTGTGCTCACCCGGCGATGTCTGCGCCACCCAGGCT
GACTGCCCAGCTCTGTGGTCAACTTAGGGTGTGGGTGTTTGCGCACCCGA
CGATGTGCGCGTCGGCCGCTGTGTTTCTTATCGTCTTCCTTTGTTGGGGG
TCGGTGCTCCGGGCCGGCCGCCGCGCACGGTTGTCCGACCAGTGCAAACG
TCGGGTGATGGAGGCGTACTTGTTGGCGGTGGTGTTGGTGATCCCGTTAC
TCTCGTACAAGACTCCTCTGGAGAGATGCCAGCCTGCGATCGTGTTTTAC
CTCTCCGTGACGTTGTTCGGTGTGTTGCAAGCGATGCCAACACCGCCACA
GCCTGCTCGGGAACAACGCCCCCCAAAGTTGACTACTAAGCACAAAGGCG
CACGGGCTCGTCGAGTCATCCACAGGCGCATGTACGGCAGGAACAGTCTA
AGAGGCGCGACGCCTCTGCCGTGCACGGGATTCGGGAGAAAACGCCGCAG
ACGAGGGTCTTGCTCAAGAGGTTCAACACAGGAAGGAGCTAGTAGCACGA
GTTTCTTGTTGTGTTCTCCTCGTAGA
back to top

protein sequence of EsuBft1014_7a-0001

>EsuBft1014_7 ID=EsuBft1014_7|Name=EsuBft1014_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=42bp
MARKRTEAQHRTTMRGAPRACNNVCLDDTTYPTWKIGSSGTV
back to top

mRNA from alignment at Scaffold_119:182993..184550+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1014_7a-0001 ID=EsuBft1014_7a-0001|Name=EsuBft1014_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1558bp|location=Sequence derived from alignment at Scaffold_119:182993..184550+ (Ectocarpus subulatus male Bft15b)
ATGGCCCGTAAGAGAACGGAGGCCCAGCACCGGACAACCATGCGCGGCGC
GCCCCGGTACTCGGTGACCACGACTAAAAACAATACAAGCGAAACGATAA
CTTTTTGGCCAGTTGTCGACGACACAGAGTACTCGATGTTTGGAAATCGC
TCCAGGGTCTACAATCTGCAACAACCGTGGTCTTGCAACGAGTGCAACGT
CTAAGCGAAAATAAAGCTTTCCGCAAACTTGTAGAACGGAACTCCTTTCT
TACTGAGTTTGAAGTTATGTCCATCCCCTGCGCGTAGACACCTCCAACGA
TCGTTGGAGAGAGGACAATCCCCATGGCAATGGTATACACCAACATTTGT
ACCGGAATGGTGTTACTAAGATCCGGGTTCCACACCGCCATTTCGCGTGT
TGTTTTGTGGTATTGTTTGCTCCCCATATCCCCGTCAGGGCATGCAACAA
CGTCTGTCTGGACGACACGACGTACCCGACGTGGAAAATCGGGTCCTCGG
GTACCGTTTAAAGGGCCATGGGCGGGTCGTGGGATGCATACTTCGCGGCT
GCCGTTCAGACTCTCTTTCTGTTCATCGTTCGGTGCATAGCTGGTGCCCT
ACAAGAGCTGCGCACGAGACGGTATGAACTCCTTGCAGGGCTGGTTGTTG
GCGCTCTTGTATTCCCGGGAGCGACAGCCCATACGTTTATACCCTTTTGG
TCGTGGACCCTCCAGTGGGCCCTCCAGGTCTGCGGACATTGGTGGTGGTT
GTGTGCGAAGTTGGACCCGGCGATCTCGGTCTCTGTCGGTTCGATGTGTT
TTGCGCCGCTGCTACGTCGTGAAATCTACCGCCGGAACATGCGATTGATG
TCGGTCATCGAGTACGTCATTGAAGGCCCCATCCACATGCTACTGGTGTC
ACCCTATCTCCGTCGAGGAGTGTTGTGGCTGGTGCAAGCACTGTGTATCT
GGGCCATGTTGGTTTCGATGCTCCGTGTTCAAGTTCGGGAGTGGCTGTGT
GCTCACCCGGCGATGTCTGCGCCACCCAGGCTGACTGCCCAGCTCTGTGG
TCAACTTAGGGTGTGGGTGTTTGCGCACCCGACGATGTGCGCGTCGGCCG
CTGTGTTTCTTATCGTCTTCCTTTGTTGGGGGTCGGTGCTCCGGGCCGGC
CGCCGCGCACGGTTGTCCGACCAGTGCAAACGTCGGGTGATGGAGGCGTA
CTTGTTGGCGGTGGTGTTGGTGATCCCGTTACTCTCGTACAAGACTCCTC
TGGAGAGATGCCAGCCTGCGATCGTGTTTTACCTCTCCGTGACGTTGTTC
GGTGTGTTGCAAGCGATGCCAACACCGCCACAGCCTGCTCGGGAACAACG
CCCCCCAAAGTTGACTACTAAGCACAAAGGCGCACGGGCTCGTCGAGTCA
TCCACAGGCGCATGTACGGCAGGAACAGTCTAAGAGGCGCGACGCCTCTG
CCGTGCACGGGATTCGGGAGAAAACGCCGCAGACGAGGGTCTTGCTCAAG
AGGTTCAACACAGGAAGGAGCTAGTAGCACGAGTTTCTTGTTGTGTTCTC
CTCGTAGA
back to top

Coding sequence (CDS) from alignment at Scaffold_119:182993..184550+

>EsuBft1014_7a-0001 ID=EsuBft1014_7a-0001|Name=EsuBft1014_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=129bp|location=Sequence derived from alignment at Scaffold_119:182993..184550+ (Ectocarpus subulatus male Bft15b)
ATGGCCCGTAAGAGAACGGAGGCCCAGCACCGGACAACCATGCGCGGCGC
GCCCCGGGCATGCAACAACGTCTGTCTGGACGACACGACGTACCCGACGT
GGAAAATCGGGTCCTCGGGTACCGTTTAA
back to top