EsuBft1013_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1013_3a-0001
Unique NameEsuBft1013_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:540785..541495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1013_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length71
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_3aEsuBft1013_3aEctocarpus subulatus male Bft15bgeneScaffold_373 540785..541495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_3a-0001-exonEsuBft1013_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 540785..541495 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_3a-0001-exonagat-three_prime_utr-144Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 540785..541118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_3a-0001-cdsEsuBft1013_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 541119..541448 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_3a-0001-exonagat-five_prime_utr-86Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 541449..541495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1013_3a-0001EsuBft1013_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 541119..541448 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1013_3a-0001 ID=EsuBft1013_3a-0001|Name=EsuBft1013_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=711bp|location=Sequence derived from alignment at Scaffold_373:540785..541495- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCCGGGTGTAGTGTTTTTATTTTTGCGTGTCCAACGGTAGTCAACTATG
ACAAACACAGGTGGCCATATCTCGGCGAATGCAGAGGTACAAGCTCGCAT
TGCGCGGGCGTCAAGACGNGAGGGTTACGAGTTCATCGATGAACTTGCGA
CACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCTCTGAAAGGAGTC
TTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTGGCCAT
ATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAGACG
CCGAGAACAGGCAAACAAGATCGACCTCGAACCAGTCATCGCCAATGATA
TGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGTTTGAAGTTGG
CGTCTTGTTTGAGAGTAGATGTGACAGATTTGCGTAGAATAGGGTAAGAT
GTTATCATGAACGGAGATGAAAGGGCTTTTCCAACACGGAGATGTAGCAT
GGATCAAAGCATTTGTTGGATTTCAGCTTGTACAAGAGGACATCAACGCA
GTAGTATTTTAGCAAGCTTACGAACGCATAAAGGATACCATGAGGATTGT
CATTGGTTATATTTCAAGTTGAAGCGGAGATATTTTTACGATGTAAGTGA
CAGTAGAAACAAGTCCTACATATGTTGTTGTACTTCGTATTGGTTTGATA
TTCATGTAGAG
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protein sequence of EsuBft1013_3a-0001

>EsuBft1013_3 ID=EsuBft1013_3|Name=EsuBft1013_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MTNTGGHISANAEVQARIARASRREGYEFIDELATHAVGGRDGGTMALKG
VFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRQTRSTSNQSSPM
IWGWSVDAS
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mRNA from alignment at Scaffold_373:540785..541495-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1013_3a-0001 ID=EsuBft1013_3a-0001|Name=EsuBft1013_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=711bp|location=Sequence derived from alignment at Scaffold_373:540785..541495- (Ectocarpus subulatus male Bft15b)
ACCCGGGTGTAGTGTTTTTATTTTTGCGTGTCCAACGGTAGTCAACTATG
ACAAACACAGGTGGCCATATCTCGGCGAATGCAGAGGTACAAGCTCGCAT
TGCGCGGGCGTCAAGACGNGAGGGTTACGAGTTCATCGATGAACTTGCGA
CACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCTCTGAAAGGAGTC
TTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTGGCCAT
ATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAGACG
CCGAGAACAGGCAAACAAGATCGACCTCGAACCAGTCATCGCCAATGATA
TGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGTTTGAAGTTGG
CGTCTTGTTTGAGAGTAGATGTGACAGATTTGCGTAGAATAGGGTAAGAT
GTTATCATGAACGGAGATGAAAGGGCTTTTCCAACACGGAGATGTAGCAT
GGATCAAAGCATTTGTTGGATTTCAGCTTGTACAAGAGGACATCAACGCA
GTAGTATTTTAGCAAGCTTACGAACGCATAAAGGATACCATGAGGATTGT
CATTGGTTATATTTCAAGTTGAAGCGGAGATATTTTTACGATGTAAGTGA
CAGTAGAAACAAGTCCTACATATGTTGTTGTACTTCGTATTGGTTTGATA
TTCATGTAGAG
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Coding sequence (CDS) from alignment at Scaffold_373:540785..541495-

>EsuBft1013_3a-0001 ID=EsuBft1013_3a-0001|Name=EsuBft1013_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_373:540785..541495- (Ectocarpus subulatus male Bft15b)
ATGACAAACACAGGTGGCCATATCTCGGCGAATGCAGAGGTACAAGCTCG
CATTGCGCGGGCGTCAAGACGNGAGGGTTACGAGTTCATCGATGAACTTG
CGACACATGCCGTGGGAGGAAGGGACGGAGGAACGATGGCTCTGAAAGGA
GTCTTCAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTGGC
CATATCTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAG
ACGCCGAGAACAGGCAAACAAGATCGACCTCGAACCAGTCATCGCCAATG
ATATGGGGATGGAGTGTAGACGCATCGTAG
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