EsuBft1012_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1012_7a-0001
Unique NameEsuBft1012_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:51469..55957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog36080.S2K9M0
ProteomeIdEsuBft1012_7
Protein domainsIPR026057
Ownerapollo_admin@sb-roscoff.fr
Noteprotein trichome birefringence-like 21 os:arabidopsis thaliana gn:tbl21 pe:3 sv:1 [Automatic annotation]
Nb exon7
Max annot lvl4751|Fungi
Length1289
Hectar predicted targeting categoryother localisation
Evalue2.56e-12
EggNOG OGs2DIAT@1|root,2S5Y9@2759|Eukaryota,3A7BT@33154|Opisthokonta,3P5G3@4751|Fungi,1GTTD@112252|Fungi incertae sedis
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMortierella verticillata NRRL 6337
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_7aEsuBft1012_7aEctocarpus subulatus male Bft15bgeneScaffold_561 51469..55957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_7a-0001EsuBft1012_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 51719..55860 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_7a-0001-exonEsuBft1012_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 51469..51910 -
EsuBft1012_7a-0001-exonagat-exon-101534Ectocarpus subulatus male Bft15bexonScaffold_561 52995..53091 -
EsuBft1012_7a-0001-exonagat-exon-101532Ectocarpus subulatus male Bft15bexonScaffold_561 53748..53946 -
EsuBft1012_7a-0001-exonagat-exon-101530Ectocarpus subulatus male Bft15bexonScaffold_561 54272..54275 -
EsuBft1012_7a-0001-exonagat-exon-101535Ectocarpus subulatus male Bft15bexonScaffold_561 54394..54605 -
EsuBft1012_7a-0001-exonagat-exon-101533Ectocarpus subulatus male Bft15bexonScaffold_561 55071..55225 -
EsuBft1012_7a-0001-exonagat-exon-101531Ectocarpus subulatus male Bft15bexonScaffold_561 55778..55957 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_7a-0001-exonagat-three_prime_utr-133Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_561 51469..51718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_7a-0001-cdsEsuBft1012_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 51719..51910 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1012_7a-0001-exonagat-five_prime_utr-82Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_561 55861..55957 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1012_7a-0001 ID=EsuBft1012_7a-0001|Name=EsuBft1012_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1289bp|location=Sequence derived from alignment at Scaffold_561:51469..55957- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTATCCAGCCCTTGTCGTCGACTGCGCAAGCGTCGAAACCGACCTCGGC
TTGCCGCCGTGCTACTCGAGCACGGCCGCTGATCCTTCCCGAGGGAGATG
GAACGAGTGCATGGGAGGCATGGACGGTCGCCGACGAACACGGGCAGTGG
CCCATTTGTTACCGGTCGAACGGCGGAAGGGTGTGGCAAAAGATGGGCAG
CAGAGCATGAGGGCGAAGAGCCCGTCCCCCCCATGCCGTACTGGAAGTGG
GAGCCTTCGGCGTGCCGTCTGGAGGAGGTGGACGAAGCCAAGTTCTGCCG
CGTTATGAAGGGGAGGAAGGGGTTGCTGTTCGCAGGGGACAGCCTGACGG
GTGAGATGATCGATACTCTAAGGGCGGTCTTGCGCGCGACGCGGGTCAAG
CACGTTAAACTGAAGATGGACACGTACACAGCCTGCGACGGAGAGCTGAC
GCTCTCGTGGTACCGCAACGATTACCTCGACACGCGATTGGACGGCTTCG
ACACGCCGCGCTGCGAGGAGCCCGACATCAGCATCTCGCAGTGCATGACA
TATGATGCTACCTTGAGCCAATATGACACCCTCCTCGTCAACGCTGGGGC
GCACCGTCAATTGGGGGGGGTGGAGGCGTACGGGTCGATGATAAAGACCG
CTGCCGAGAGCCTGACCGCGTCGATGAGACGGTTACACGGGGATAGCGCC
ATCTTGGTGGTCAGAAACACCGTCCCGGGTCACGGCGAGAGCTTCGATAG
GATGTTCACCGGGCCTGTCAATTTAGACACGGCCCTCGACCTCGTCGAGA
AAGGCCCGCCGGAGTTCGAGTGGACGACGATCAGAGATAAGAACACGCTC
CTGGAGGAAGCGTTCGACGCCACGCATGGCCGGACGCTGCTGGATGCCTA
CTCGCCGACAATCCTGAGGGCAGACTCCCACGCCTCAGCAACAGATGGCC
TGCACTACTGCTTGCCTGGGCCTATTGACCACTGGGTGGTTCTGTTGTAC
AATATTCTCCTCGAAAAAGTGAATAGTGACAACAAATAGATTTGAATCTT
GTTTGTTTTGTTTGTACTGTTGGTACTCTCTGCGCATGAAGAGCGTTGTG
GTTTGACCCAGCGTGAGTCACAGTACGACGTGACCTAGCATGAGTCACAG
CAGTAGTAGTTGTAGCTCTCTTTGCATCAAGAGCGTACTGGTTTGTATTC
GCTAACCCCTTCGTCCCTGCGCTTTGGAGGCAGGGAAAATAGATTCCTAA
TATTCGCAACCTGACCCAGCGGGTGGTTGTTGCCTAGTC
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protein sequence of EsuBft1012_7a-0001

>EsuBft1012_7 ID=EsuBft1012_7|Name=EsuBft1012_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=313bp
MERVHGRHGRSPTNTGSGPFVTGRTAEGCGKRWAAEHEGEEPVPPMPYWK
WEPSACRLEEVDEAKFCRVMKGRKGLLFAGDSLTGEMIDTLRAVLRATRV
KHVKLKMDTYTACDGELTLSWYRNDYLDTRLDGFDTPRCEEPDISISQCM
TYDATLSQYDTLLVNAGAHRQLGGVEAYGSMIKTAAESLTASMRRLHGDS
AILVVRNTVPGHGESFDRMFTGPVNLDTALDLVEKGPPEFEWTTIRDKNT
LLEEAFDATHGRTLLDAYSPTILRADSHASATDGLHYCLPGPIDHWVVLL
YNILLEKVNSDNK
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mRNA from alignment at Scaffold_561:51469..55957-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1012_7a-0001 ID=EsuBft1012_7a-0001|Name=EsuBft1012_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4489bp|location=Sequence derived from alignment at Scaffold_561:51469..55957- (Ectocarpus subulatus male Bft15b)
GGTATCCAGCCCTTGTCGTCGACTGCGCAAGCGTCGAAACCGACCTCGGC
TTGCCGCCGTGCTACTCGAGCACGGCCGCTGATCCTTCCCGAGGGAGATG
GAACGAGTGCATGGGAGGCATGGACGGTCGCCGACGAACACGGGCAGTGG
CCCATTTGTTACCGGTCGAACGGCGGAAGGGTAAGATGAAGGCTTTCGTA
TCCCGTGCGTGATGGCCGTAGGGCTTACCAGCTGCTTGTGGTATAGCCGC
CGAGCGCAACAACGGCTGTAAGGCCACCCCACTAGAGTTTTGGTAGCCTT
GGGGGCTTTTTTTTTCCTGTTAGCCCTGCGGTGAATCGTACACGCACGTG
AGCACGTCTCTATTTAGTCGTCCACCGTCCGCTACTACAACGGTGTGCTC
AACTCGTACGTATATATGCCCGACGTAAGCTGCAACCCGCCGCAGTCGAC
CCTACCGTTGTGTGTTTTCTGTTGTTGATTAAAAAAATCGTTGATAAAAG
GCGTCGGTGCGTCGAACCAAGTCCAATTTTCGCGATAAGTCTGGACCGGC
CAGCTCGAAACCGTCGATGAGGAATTCTTTCAAAAATATCTCCGTCGCCT
GTGTTTCGTCTAGATTGTGCGTTACGGCAGTGACAAGCCCAGTCGTACGA
CACAAGTACGCACAACACGGGAGGTGCATGTGTTTATTGTGACGTCCACT
GTTGTGTCTGAAACACCGCGCGCTCGCAACAGGTGTGGCAAAAGATGGGC
AGCAGAGCATGAGGGCGAAGAGCCCGTCCCCCCCATGCCGTACTGGAAGT
GGGAGCCTTCGGCGTGCCGTCTGGAGGAGGTGGACGAAGCCAAGTTCTGC
CGCGTTATGAAGGGGAGGAAGGGGTTGCTGTTCGCAGGTGAGAGCCACAT
GGCTACGTGAAGGACCACCCCCGAAGGAACACGGCCGCTGGTGCACGGTG
CTGTTGTGCCTTTGCCCGCTCAGAAGANGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCG
AGACGTGCGAGGCAGGTGAGATATATCTCACCTGAACACCGATGGAGAAA
AGCCCGCGTTACAAAAATAATTCAACAAATTTTGTTTCCTCTGCTCGCAA
AGGCTAGGGGAAGATGATTTTTGGCACACGTGCAAGGAAACCACAAGATC
TGACGGGATGGTCGGTGGATCTGCAGACCCACAACCTGCTATGCATTCTC
CTGCCCTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCGCCT
AGGGGACAGCCTGACGGGTGAGATGATCGATACTCTAAGGGCGGTCTTGC
GCGCGACGCGGGTCAAGCACGTTAAACTGAAGATGGACACGTACACAGCC
TGCGACGGAGAGCTGACGCTCTCGTGGTACCGCAACGATTACCTCGACAC
GCGATTGGACGGCTTCGACACGCCGCGCTGCGAGGAGCCCGACATCAGCA
TCTCGCAGTGCATGGTCTTTGCAGGCATGTTCCTTCGGTCGTGGCTCCGA
TATGAGAGGGGGACCTTTTAAGAGGGGGCTCCGACGTCCAAGAGGGTCGC
AAATCGGTCGTCACGGACTCGATCCACACCAGACATGTTTGCGCAGCACA
TCGTGCGGTTGGGAACCTCTAGCGTGCCTTGTCCCATCGGAGAAACTCTT
GGCCTCGCCTGTCGGTGTGCTTGTGCTGGTAGTGTTGTCGTTCGGAAGCC
GCAGCTCTGCGTTGTCGGTGATATTGTTGCAGCTAGACCCATGATGGTGC
AACAACAGCGTTCCGCATTGTTGTCGTCTGCGCCATGTCGGTGCCGAACG
ACATGGTTGCGTGATTTGTTTTTATTCTCGCGAATGATTCTGCCGTGAGC
CAGCTCCGAATCGATCTTGATGACGACGTAACGTCAAGACTGCTTTCATC
GTTTCTCGCAGATGATGCTACCTTGAGCCAATATGACACCCTCCTCGTCA
ACGCTGGGGCGCACCGTCAATTGGGGGGGGTGGAGGCGTACGGGTCGATG
ATAAAGACCGCTGCCGAGAGCCTGACCGCGTCGATGAGACGGTTACACGG
GGATAGCGCCATCTTGGTGGTCAGAAACACCGTCCCGGGTCACGGCGAGA
GCTTCGATAGGTGGGAGACGGGTCCAGGGGATGTTGGCTAAGCCATTACG
GAGGCTGAAAAACAAGTTCAGTTTTCATACGTGATGACTTTGGGAGGCAT
GCGAACGTACGCTATGGATATTTATATTTCGAGGTCTTACACGCGGGACA
GGTCGCCTGAAGTATTTCTGCGCAATCGTTTGTGTCTAGTTCGTCCCGCT
TCGAGCATCGATGTGTGCATCGCGCGGTGTTATTTCAACAGTTGCAGATC
TAAATAAACGGCGGGAGATCATTTTTATGGGGCAACACAGGCAGCACGTG
CTGTCATTCGTCGTCGCTTGAATCCGTAACCTGCCATCATTCTTGTATCC
GGCGTTGTTCACCTCCGGCGACATGTGGTGTAGTGTTTTTCTCTTGCTTC
ACATCTCCGCTCCATGAAATGAAACAAGCAGTCCTGCCGAGCCCGAGCAG
AGCAATGCTACCCGCACGCGCTCATTCGATTTCTTTCTTTGGCAGTCCAG
TTTTTTCCACATCTGTCTTTTTTTGGTCGCGGCAATTGTTCCCTCCCTCA
CCAACTCGTATCTACACTTTGCTCCGCTGCCGAATATGAGGAAGAGGTTA
TTGTCGTGCCCGAAAAGCTTGAGTCGCGACAACGTTTTTTTTTATCTGTG
CCACTTTGCGTAACAGGATGTTCACCGGGCCTGTCAATTTAGACACGGCC
CTCGACCTCGTCGAGAAAGGCCCGCCGGAGTTCGAGTGGACGACGATCAG
AGATAAGAACACGGTAAGGTTCTCATTCTTTTTTTATCTTGGCGCCGTCG
TCGCGTGTGAAGATTAGCAAGGGTCGGGGAGAGGCCTCAGAGTCGATCTT
GCTTGTTGCGGGAGGGAGCCCAAGAAACCGCGCCGCGTGTACGCTGCGAT
AGGCTCGTCCTCGCCTCTTGTGTGATTTTCATATCAAACGGAGTAGACTA
CACGGCAGCAGTGTAAATAGTCGGTCTTGCTGATTTTGTAGCCCAGAACG
TTGAACAGCCAGCCTTTCCAGGGTGCGAGTCAAGGTCAAAAATTGGAAGT
GTTTTCACCCCCATCCTGCTCCAAACCATGTGCCGTCTCTAGACTCTTCT
AGCGTAGCCTTGTGGGATGGTTATGATTGGTTGTCCTTCTGCTGCTCTTC
TTCGTTTCTCGGCAGGCAATGGGCGCCCTCGAAGAATCCATATGGGTACT
ATATATGTTTGCATTTACGCTTTTGCTCCGAAGCCGCTGCCCGTGTGCCC
CTCTTGGCCCACTGAGCACATTGCCTCCTTTTCACATTCCTTGTGGTCCG
AGAGGGTTGTCCGTTTTTTTCTTGTTCTCTGTGTGCTTGTGTGTCTCTCT
TCCGTTAGCATCGGCCGCACTATCCGACTCACCAACGACAAGGCACCGCT
CTCGCTGCAGCGGGACGAAAAGTCGCGATTTCGCTTCCTTTTTTTTTGTC
CGCGGATCCCCCGACAGGAGGGCCGCGGAGGAACTCGGACTTGAGGGTCA
TGTCTCAGGATACACACTACTTCAGTTTTGTTCGCAACCAGTGTGTGTGT
GTGTGTGTGTTTTTTTTTTCTACACTGCTGTGTCACGAGAAAGACACAAC
TCTATCGATGGACTAGAGTCCACTGTCAACCAAGAGTTGACTTCATGATG
GCGGCTGCTAAATAGTCCACTGCTGTTTCTACGTTTTTTCCGCGAACATG
GCATCTCACTCTCCCCTGTGGGTAACAGGCTCAACCTCATATGCCTTGCA
CAACAGTAGATAGATCGTGTTCACAGAGTAGATCGTGTTCTTAACGTTTG
CGTGTGCGCCCGCTCTTGGATGTACCGTCTCTATGTTGAAACCAAAGCTC
CTGGAGGAAGCGTTCGACGCCACGCATGGCCGGACGCTGCTGGATGCCTA
CTCGCCGACAATCCTGAGGGCAGACTCCCACGCCTCAGCAACAGATGGCC
TGCACTACTGCTTGCCTGGGCCTATTGACCACTGGGTGGTTCTGTTGTAC
AATATTCTCCTCGAAAAAGTGAATAGTGACAACAAATAGATTTGAATCTT
GTTTGTTTTGTTTGTACTGTTGGTACTCTCTGCGCATGAAGAGCGTTGTG
GTTTGACCCAGCGTGAGTCACAGTACGACGTGACCTAGCATGAGTCACAG
CAGTAGTAGTTGTAGCTCTCTTTGCATCAAGAGCGTACTGGTTTGTATTC
GCTAACCCCTTCGTCCCTGCGCTTTGGAGGCAGGGAAAATAGATTCCTAA
TATTCGCAACCTGACCCAGCGGGTGGTTGTTGCCTAGTC
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Coding sequence (CDS) from alignment at Scaffold_561:51469..55957-

>EsuBft1012_7a-0001 ID=EsuBft1012_7a-0001|Name=EsuBft1012_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=942bp|location=Sequence derived from alignment at Scaffold_561:51469..55957- (Ectocarpus subulatus male Bft15b)
ATGGAACGAGTGCATGGGAGGCATGGACGGTCGCCGACGAACACGGGCAG
TGGCCCATTTGTTACCGGTCGAACGGCGGAAGGGTGTGGCAAAAGATGGG
CAGCAGAGCATGAGGGCGAAGAGCCCGTCCCCCCCATGCCGTACTGGAAG
TGGGAGCCTTCGGCGTGCCGTCTGGAGGAGGTGGACGAAGCCAAGTTCTG
CCGCGTTATGAAGGGGAGGAAGGGGTTGCTGTTCGCAGGGGACAGCCTGA
CGGGTGAGATGATCGATACTCTAAGGGCGGTCTTGCGCGCGACGCGGGTC
AAGCACGTTAAACTGAAGATGGACACGTACACAGCCTGCGACGGAGAGCT
GACGCTCTCGTGGTACCGCAACGATTACCTCGACACGCGATTGGACGGCT
TCGACACGCCGCGCTGCGAGGAGCCCGACATCAGCATCTCGCAGTGCATG
ACATATGATGCTACCTTGAGCCAATATGACACCCTCCTCGTCAACGCTGG
GGCGCACCGTCAATTGGGGGGGGTGGAGGCGTACGGGTCGATGATAAAGA
CCGCTGCCGAGAGCCTGACCGCGTCGATGAGACGGTTACACGGGGATAGC
GCCATCTTGGTGGTCAGAAACACCGTCCCGGGTCACGGCGAGAGCTTCGA
TAGGATGTTCACCGGGCCTGTCAATTTAGACACGGCCCTCGACCTCGTCG
AGAAAGGCCCGCCGGAGTTCGAGTGGACGACGATCAGAGATAAGAACACG
CTCCTGGAGGAAGCGTTCGACGCCACGCATGGCCGGACGCTGCTGGATGC
CTACTCGCCGACAATCCTGAGGGCAGACTCCCACGCCTCAGCAACAGATG
GCCTGCACTACTGCTTGCCTGGGCCTATTGACCACTGGGTGGTTCTGTTG
TACAATATTCTCCTCGAAAAAGTGAATAGTGACAACAAATAG
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