EsuBft1011_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1011_5a-0001
Unique NameEsuBft1011_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_644contigScaffold_644:350564..353161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft1011_5
Protein domainsIPR007087
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length138
Hectar predicted targeting categoryother localisation
Evalue3.72e-169
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Cross References
External references for this mRNA
DatabaseAccession
GO0046872
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_5aEsuBft1011_5aEctocarpus subulatus male Bft15bgeneScaffold_644 350564..353161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_5a-0001EsuBft1011_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_644 350564..353161 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_5a-0001-exonEsuBft1011_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_644 350564..350682 -
EsuBft1011_5a-0001-exonagat-exon-10319Ectocarpus subulatus male Bft15bexonScaffold_644 351108..351273 -
EsuBft1011_5a-0001-exonagat-exon-10318Ectocarpus subulatus male Bft15bexonScaffold_644 351498..351727 -
EsuBft1011_5a-0001-exonagat-exon-10320Ectocarpus subulatus male Bft15bexonScaffold_644 351775..352489 -
EsuBft1011_5a-0001-exonagat-exon-10321Ectocarpus subulatus male Bft15bexonScaffold_644 353003..353161 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1011_5a-0001-cdsEsuBft1011_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_644 350564..350682 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1011_5a-0001 ID=EsuBft1011_5a-0001|Name=EsuBft1011_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1389bp|location=Sequence derived from alignment at Scaffold_644:350564..353161- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAAGACCCCATCTTCTAAGCACCCACCTGCCGCTGCAGCGGCTAC
CGCGAAGAGAAAGGTCGTGGATCGAGGGAAGCAAGCCAGGGAGAGAGCTG
CCAAACGCACTTTAGGCGGCAACATCTGTAACGCGTTCGCGATTGGCAGC
GGACAACCGGTTGAGCGGACTCGCGGTGGAGTGAAAGAGCTCATATCCGG
TATCAGCTTCTCACCTCCGGCTCCGGAGTCCCGACGACCTTGCCCTCACT
GTCCCATGACCTGCGTGAACGAGCAAGGCCTTGGGATCCACGTGAGAACG
CAGCATAGCAGTGCAAACATGTCCAACGGCGCGCAGCTGCGGCGCCTGCT
ACGGAAGGACCTCGAAAGGAGTGTCTTGTCGTGGGAAGCAGCCGGGCCAG
GGCGTTGTTGGCTCGTGAAGGTCGATGATGCGACGGGGGCGGCTTCGTTT
GTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTT
TATGGACCGCAAACCCAAGGAAACTCGTGGAGCTCCCAAGAGCAGGCGAT
ACGACTTCAGGTTCAAAGCTCATGCTGTAAACCAGATGGCGATACGACTG
TTTCGCAATCTCCTGCAAGAGCCGGTGCGGTACAGGGCGCCCGACGAATC
GGACGTGTCGGCGATTACGACGGTCGTGGAGAGAGAGTCGAGAGTTCCCA
AGTGCGGTCAATTGCAGCCCTGGGAGCGTTGGAATGTGGATCACGTGCCT
TTGGCATTCGTAAACGGGCTGATCGACACGTGGGACAAGAGAGGTGCGTT
GCGGGTAGCAATCTCGCAGCCCTTTCCTGGCCTAGAGCAAAGGCAGTGCA
CCATGCAAATCATCTTTGGTCCGGCGGTGAAGAAAGCCGCGTACCACGAG
GACGTGGACGTGCTTTTCCAGGAGAATGCGTGGGCCGACCAAAAATTCTG
CATAGACTGGGCGAAGAGGTCCTACCGCGAAGGCCTGATGAGCAGGGGGG
GTGAGCTCCCCAAGGCGAGGTCCATTCTTATCATGGACTATTTGAACGCG
CAGACGACGGACGAGGTGCAACCAGTTGGTGCAGGAGCCGAGCGATTTCT
CAAGGAGGGTCTGGACAAGCCGTACACCTTCGCAAACGATGAAGACAATA
GTGAAGACGAACAAGGTTCGGAGAACGGCAGCGATGAGCCTGAGGGGCGG
GGGGAGGAGGACGATGGAGGACGTGAGACGGTCGTGGAGGGCGCTAACTC
CAGCGTTGAAGACGACGGCGAAGGACACTCGCCTCTGTACGGCTACTGTG
TACAGGTGGAGCTAGACCAGAGTACGCGCAAGACGAAGTTGCCCTTAGAC
AAGTACAGCGGAGATCCGGATGCGGCTGTAGGCTCCTAG
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protein sequence of EsuBft1011_5a-0001

>EsuBft1011_5 ID=EsuBft1011_5|Name=EsuBft1011_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=462bp
MYKTPSSKHPPAAAAATAKRKVVDRGKQARERAAKRTLGGNICNAFAIGS
GQPVERTRGGVKELISGISFSPPAPESRRPCPHCPMTCVNEQGLGIHVRT
QHSSANMSNGAQLRRLLRKDLERSVLSWEAAGPGRCWLVKVDDATGAASF
VLQRKRFLDLDLDSDGFMDRKPKETRGAPKSRRYDFRFKAHAVNQMAIRL
FRNLLQEPVRYRAPDESDVSAITTVVERESRVPKCGQLQPWERWNVDHVP
LAFVNGLIDTWDKRGALRVAISQPFPGLEQRQCTMQIIFGPAVKKAAYHE
DVDVLFQENAWADQKFCIDWAKRSYREGLMSRGGELPKARSILIMDYLNA
QTTDEVQPVGAGAERFLKEGLDKPYTFANDEDNSEDEQGSENGSDEPEGR
GEEDDGGRETVVEGANSSVEDDGEGHSPLYGYCVQVELDQSTRKTKLPLD
KYSGDPDAAVGS
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mRNA from alignment at Scaffold_644:350564..353161-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1011_5a-0001 ID=EsuBft1011_5a-0001|Name=EsuBft1011_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2598bp|location=Sequence derived from alignment at Scaffold_644:350564..353161- (Ectocarpus subulatus male Bft15b)
ATGTACAAGACCCCATCTTCTAAGCACCCACCTGCCGCTGCAGCGGCTAC
CGCGAAGAGAAAGGTCGTGGATCGAGGGAAGCAAGCCAGGGAGAGAGCTG
CCAAACGCACTTTAGGCGGCAACATCTGTAACGCGTTCGCGATTGGCAGC
GGACAACCGGTGAGTTCGTTTATCTGACGCACGCAAATGATTTGTTCGCT
ACACAAGTGTTGGTAGATTTAATAAGAACTCCCATGAAAACGATGGCAAC
AAATAAACTTCGTTCGTGTGTAGTCTACATGTATGTATGTTGTGAAATCT
TGTGCTCAGTCCATCCCATAGCGTGTGCATAAATAGAAAATAGTATGTAG
TGTAGATATTCTAGGTTGAACGTCGGCGACCTAATTTTGAGTATGCACTG
TACACTCTTACTTGGCGCAACATACAGTGCACGTTCTCCGCTTGATAGTT
TAGTTTTAATGTGACACAAAGAAGAATTATCTCCACTCTCTCGTGTGGTT
CACGATAATCTATCCACGGAGTATTGTGTAGGGAGTACATAGGCATCTTT
TGCCAGCGACATCCACGGAAGTTTGAGGTCGGCAGCGCCACACTCAAAAG
CGAATGACACATCACATGGCTCGTTGAATCACCTACACGGCAATTCCGCC
CGTCGTCCACCGTGCTGCGCAGGTTGAGCGGACTCGCGGTGGAGTGAAAG
AGCTCATATCCGGTATCAGCTTCTCACCTCCGGCTCCGGAGTCCCGACGA
CCTTGCCCTCACTGTCCCATGACCTGCGTGAACGAGCAAGGCCTTGGGAT
CCACGTGAGAACGCAGCATAGCAGTGCAAACATGTCCAACGGCGCGCAGC
TGCGGCGCCTGCTACGGAAGGACCTCGAAAGGAGTGTCTTGTCGTGGGAA
GCAGCCGGGCCAGGGCGTTGTTGGCTCGTGAAGGTCGATGATGCGACGGG
GGCGGCTTCGTTTGTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGG
ATAGCGACGGCTTTATGGACCGCAAACCCAAGGAAACTCGTGGAGCTCCC
AAGAGCAGGCGATACGACTTCAGGTTCAAAGCTCATGCTGTAAACCAGAT
GGCGATACGACTGTTTCGCAATCTCCTGCAAGAGCCGGTGCGGTACAGGG
CGCCCGACGAATCGGACGTGTCGGCGATTACGACGGTCGTGGAGAGAGAG
TCGAGAGTTCCCAAGTGCGGTCAATTGCAGCCCTGGGAGCGTTGGAATGT
GGATCACGTGCCTTTGGCATTCGTAAACGGGCTGATCGACACGTGGGACA
AGAGAGGTGCGTTGCGGGTAGCAATCTCGCAGCCCTTTCCTGGCCTAGAG
CAAAGGCAGTGCACCATGCAAATCATCTTTGGTCCGGGTGAGAAGACCAT
GCGATTTTCGGTGATTTTCCGAGGCACGGGAAAGCGGTGAAGAAAGCCGC
GTACCACGAGGACGTGGACGTGCTTTTCCAGGAGAATGCGTGGGCCGACC
AAAAATTCTGCATAGACTGGGCGAAGAGGTCCTACCGCGAAGGCCTGATG
AGCAGGGGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTTATCATGGACTA
TTTGAACGCGCAGACGACGGACGAGGTGCAACCAGTTGGTGCAGGAGCCG
AGCGATTTCTCAAGGTGAAAGTTGGGACGCAGATGGACATATGGCTCGAG
CGATGGATAATCTCGAGAGGTGGGAAACCGCGTCGCTGAAAGCTTCTGAC
AGGCGGGTACTGATCACTCAGTGGATGGGAGCGGCCACGGCAAGACTCAA
CAGTCAACAGGCGTTCCGATACCGCCTTTTCGAAAAGTGCGGGATGGCCA
TGACCGTGGACGGCTCAGGCGATGATCGAATTACCTAGGAGGGTCTGGAC
AAGCCGTACACCTTCGCAAACGATGAAGACAATAGTGAAGACGAACAAGG
TTCGGAGAACGGCAGCGATGAGCCTGAGGGGCGGGGGGAGGAGGACGATG
GAGGACGTGAGACGGTCGTGGAGGGCGCTAACTCCAGCGTTGAAGACGAC
GGCGGTAAGTTTGTTTTGCACTAGACCCACTCTGTACCATTCCCTTTTTT
GATGACGATGTCCTTCATGTTGATGTTCGCTTGTGTTTTTGCTGATGTAC
TGTTTCCGCGCACGACCACGAACAAATGGTGATACAATAGCTTCATGTTG
AGATATGGCGACGTGACACCCTAACTTCTTGTCGCGTTTCCCGGTGCCTC
GTTCGCAGATAAGTCTCAACCCCAGACCGACGAGCTAGCTCTTCTGGACG
ACGACGACAGCATGGACCCACCAGACCCGGAGGACGAGATACAGGGAATG
GGGACCCCGGCAGGCTTTCGTATTCAAGAAGCTAAACCCGTTGCTCTTGA
CAGATTGCTTTTACGACGTGGAGTGCTCGTTAGGCTGGGGATGGGGTGGT
TTGGTGGTTTCATCACTCAACAATCTCAGAAGGACACTCGCCTCTGTACG
GCTACTGTGTACAGGTGGAGCTAGACCAGAGTACGCGCAAGACGAAGTTG
CCCTTAGACAAGTACAGCGGAGATCCGGATGCGGCTGTAGGCTCCTAG
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Coding sequence (CDS) from alignment at Scaffold_644:350564..353161-

>EsuBft1011_5a-0001 ID=EsuBft1011_5a-0001|Name=EsuBft1011_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1389bp|location=Sequence derived from alignment at Scaffold_644:350564..353161- (Ectocarpus subulatus male Bft15b)
ATGTACAAGACCCCATCTTCTAAGCACCCACCTGCCGCTGCAGCGGCTAC
CGCGAAGAGAAAGGTCGTGGATCGAGGGAAGCAAGCCAGGGAGAGAGCTG
CCAAACGCACTTTAGGCGGCAACATCTGTAACGCGTTCGCGATTGGCAGC
GGACAACCGGTTGAGCGGACTCGCGGTGGAGTGAAAGAGCTCATATCCGG
TATCAGCTTCTCACCTCCGGCTCCGGAGTCCCGACGACCTTGCCCTCACT
GTCCCATGACCTGCGTGAACGAGCAAGGCCTTGGGATCCACGTGAGAACG
CAGCATAGCAGTGCAAACATGTCCAACGGCGCGCAGCTGCGGCGCCTGCT
ACGGAAGGACCTCGAAAGGAGTGTCTTGTCGTGGGAAGCAGCCGGGCCAG
GGCGTTGTTGGCTCGTGAAGGTCGATGATGCGACGGGGGCGGCTTCGTTT
GTCCTCCAGCGGAAGCGCTTTCTCGATCTCGACTTGGATAGCGACGGCTT
TATGGACCGCAAACCCAAGGAAACTCGTGGAGCTCCCAAGAGCAGGCGAT
ACGACTTCAGGTTCAAAGCTCATGCTGTAAACCAGATGGCGATACGACTG
TTTCGCAATCTCCTGCAAGAGCCGGTGCGGTACAGGGCGCCCGACGAATC
GGACGTGTCGGCGATTACGACGGTCGTGGAGAGAGAGTCGAGAGTTCCCA
AGTGCGGTCAATTGCAGCCCTGGGAGCGTTGGAATGTGGATCACGTGCCT
TTGGCATTCGTAAACGGGCTGATCGACACGTGGGACAAGAGAGGTGCGTT
GCGGGTAGCAATCTCGCAGCCCTTTCCTGGCCTAGAGCAAAGGCAGTGCA
CCATGCAAATCATCTTTGGTCCGGCGGTGAAGAAAGCCGCGTACCACGAG
GACGTGGACGTGCTTTTCCAGGAGAATGCGTGGGCCGACCAAAAATTCTG
CATAGACTGGGCGAAGAGGTCCTACCGCGAAGGCCTGATGAGCAGGGGGG
GTGAGCTCCCCAAGGCGAGGTCCATTCTTATCATGGACTATTTGAACGCG
CAGACGACGGACGAGGTGCAACCAGTTGGTGCAGGAGCCGAGCGATTTCT
CAAGGAGGGTCTGGACAAGCCGTACACCTTCGCAAACGATGAAGACAATA
GTGAAGACGAACAAGGTTCGGAGAACGGCAGCGATGAGCCTGAGGGGCGG
GGGGAGGAGGACGATGGAGGACGTGAGACGGTCGTGGAGGGCGCTAACTC
CAGCGTTGAAGACGACGGCGAAGGACACTCGCCTCTGTACGGCTACTGTG
TACAGGTGGAGCTAGACCAGAGTACGCGCAAGACGAAGTTGCCCTTAGAC
AAGTACAGCGGAGATCCGGATGCGGCTGTAGGCTCCTAG
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