EsuBft1010_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1010_2a-0001
Unique NameEsuBft1010_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_54contigScaffold_54:730..1098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1010_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length36
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_2aEsuBft1010_2aEctocarpus subulatus male Bft15bgeneScaffold_54 730..1098 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_2a-0001-exonEsuBft1010_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_54 730..1098 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_2a-0001-exonagat-three_prime_utr-115Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_54 730..849 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_2a-0001-cdsEsuBft1010_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_54 850..1056 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_2a-0001-exonagat-five_prime_utr-67Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_54 1057..1098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1010_2a-0001EsuBft1010_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_54 850..1056 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1010_2a-0001 ID=EsuBft1010_2a-0001|Name=EsuBft1010_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=369bp|location=Sequence derived from alignment at Scaffold_54:730..1098- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAGTGTAGTGGACGCCCTGGAAGACGTGAGTGCTTCCGTGTGATGAAGAA
GGTGACAAGATGTTGTAAACACTGGCGCTTATGTGGCCAACACACACAGA
TAAACCGCAGAGTATGCAGGAGTCCAGAAGATGGCTGGGTACTGGAGATG
ACCAGGATGGCTACGATGGCAGACAGTCAGGAAGGATCCACACGAGAGAG
TGAGCTACTCGTCAACTCGTCAAGGCAACATAGAATCCCACAGAAGTGAT
TCCTCCGCATATACAACGCACGTTACATACCAACCGGCACATAACAGATC
TACGATGATCTACGACGTACAAGTGCAGTGCTACTGAACATTGACTCATA
ATGGCTATGTGCTAACATT
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protein sequence of EsuBft1010_2a-0001

>EsuBft1010_2 ID=EsuBft1010_2|Name=EsuBft1010_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MKKVTRCCKHWRLCGQHTQINRRVCRSPEDGWVLEMTRMATMADSQEGST
RESELLVNSSRQHRIPQK
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mRNA from alignment at Scaffold_54:730..1098-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1010_2a-0001 ID=EsuBft1010_2a-0001|Name=EsuBft1010_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=369bp|location=Sequence derived from alignment at Scaffold_54:730..1098- (Ectocarpus subulatus male Bft15b)
TAGTGTAGTGGACGCCCTGGAAGACGTGAGTGCTTCCGTGTGATGAAGAA
GGTGACAAGATGTTGTAAACACTGGCGCTTATGTGGCCAACACACACAGA
TAAACCGCAGAGTATGCAGGAGTCCAGAAGATGGCTGGGTACTGGAGATG
ACCAGGATGGCTACGATGGCAGACAGTCAGGAAGGATCCACACGAGAGAG
TGAGCTACTCGTCAACTCGTCAAGGCAACATAGAATCCCACAGAAGTGAT
TCCTCCGCATATACAACGCACGTTACATACCAACCGGCACATAACAGATC
TACGATGATCTACGACGTACAAGTGCAGTGCTACTGAACATTGACTCATA
ATGGCTATGTGCTAACATT
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Coding sequence (CDS) from alignment at Scaffold_54:730..1098-

>EsuBft1010_2a-0001 ID=EsuBft1010_2a-0001|Name=EsuBft1010_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_54:730..1098- (Ectocarpus subulatus male Bft15b)
ATGAAGAAGGTGACAAGATGTTGTAAACACTGGCGCTTATGTGGCCAACA
CACACAGATAAACCGCAGAGTATGCAGGAGTCCAGAAGATGGCTGGGTAC
TGGAGATGACCAGGATGGCTACGATGGCAGACAGTCAGGAAGGATCCACA
CGAGAGAGTGAGCTACTCGTCAACTCGTCAAGGCAACATAGAATCCCACA
GAAGTGA
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