EsuBft100_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_4a-0001
Unique NameEsuBft100_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:112985..113227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft100_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length24
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_4aEsuBft100_4aEctocarpus subulatus male Bft15bgeneScaffold_441 112985..113227 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_4a-0001-exonEsuBft100_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 112985..113227 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_4a-0001-exonagat-three_prime_utr-105Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 112985..113035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_4a-0001-cdsEsuBft100_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 113036..113227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_4a-0001EsuBft100_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 113036..113227 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_4a-0001 ID=EsuBft100_4a-0001|Name=EsuBft100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=243bp|location=Sequence derived from alignment at Scaffold_441:112985..113227- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGGAGGACAACCGCCTCCCCAAGCGCATCCTGTTGGGAGTGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCACCATGAGAGACGAAAAGGAAGGG
GGTAAATGGAACGAGAGCGCCAAGGACCCGAAGGTGTGGTAGAACAAGGT
CGAGGACGGGGCGGCATGGCTCATGAGGAAATGGCGCAGGCAG
back to top

protein sequence of EsuBft100_4a-0001

>EsuBft100_4 ID=EsuBft100_4|Name=EsuBft100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=63bp
MRMEDNRLPKRILLGVMAGGVGYRGGQESDWVSRLGEDLVAFTMRDEKEG
GKWNESAKDPKVW
back to top

mRNA from alignment at Scaffold_441:112985..113227-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_4a-0001 ID=EsuBft100_4a-0001|Name=EsuBft100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=243bp|location=Sequence derived from alignment at Scaffold_441:112985..113227- (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAACCGCCTCCCCAAGCGCATCCTGTTGGGAGTGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCACCATGAGAGACGAAAAGGAAGGG
GGTAAATGGAACGAGAGCGCCAAGGACCCGAAGGTGTGGTAGAACAAGGT
CGAGGACGGGGCGGCATGGCTCATGAGGAAATGGCGCAGGCAG
back to top

Coding sequence (CDS) from alignment at Scaffold_441:112985..113227-

>EsuBft100_4a-0001 ID=EsuBft100_4a-0001|Name=EsuBft100_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=192bp|location=Sequence derived from alignment at Scaffold_441:112985..113227- (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAACCGCCTCCCCAAGCGCATCCTGTTGGGAGTGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCACCATGAGAGACGAAAAGGAAGGG
GGTAAATGGAACGAGAGCGCCAAGGACCCGAAGGTGTGGTAG
back to top