EsuBft100_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_18a-0001
Unique NameEsuBft100_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:275138..278616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRS2
ProteomeIdEsuBft100_18
Protein domainsIPR023313
Protein domainsPTHR24067
Protein domainsSM00212
Protein domainsIPR016135
Protein domainsIPR000608
Ownerapollo_admin@sb-roscoff.fr
Notenedd8-conjugating enzyme ubc12 os:mus musculus gn:ube2m pe:2 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1248
Hectar predicted targeting categoryother localisation
Evalue1.77e-146
EggNOG OGsKOG0420@1|root,KOG0420@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_002220.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameUBE2M
KEGG rclassRC00005,RC00726,RC00836,RC00837,RC01726
KEGG koko:K00053,ko:K00573,ko:K00698,ko:K10579
KEGG ReactionR02335,R03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120
KEGG ModuleM00019,M00570
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
EC1.1.1.86,2.1.1.77,2.4.1.16
DescriptionNEDD8 transferase activity
COG categoryO
CAZyGT2
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0010468
GO0070735
GO0034613
GO0080120
EC6.3.2
GO0004175
GO0006508
GO0000166
GO0070062
GO0004842
GO0045879
GO0009733
GO0006301
GO0045116
GO0007179
GO0005829
GO0009793
GO0018169
GO0016485
GO0019788
GO0016567
GO0043525
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_18aEsuBft100_18aEctocarpus subulatus male Bft15bgeneScaffold_441 275138..278616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_18a-0001EsuBft100_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 275581..278480 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_18a-0001-exonagat-exon-35348Ectocarpus subulatus male Bft15bexonScaffold_441 275138..275766 -
EsuBft100_18a-0001-exonagat-exon-35349Ectocarpus subulatus male Bft15bexonScaffold_441 276200..276286 -
EsuBft100_18a-0001-exonEsuBft100_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 276455..276541 -
EsuBft100_18a-0001-exonagat-exon-35351Ectocarpus subulatus male Bft15bexonScaffold_441 276846..276925 -
EsuBft100_18a-0001-exonagat-exon-35350Ectocarpus subulatus male Bft15bexonScaffold_441 277102..277303 -
EsuBft100_18a-0001-exonagat-exon-35352Ectocarpus subulatus male Bft15bexonScaffold_441 278454..278616 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_18a-0001-exonagat-three_prime_utr-95Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 275138..275580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_18a-0001-cdsEsuBft100_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 275581..275766 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_18a-0001-exonagat-five_prime_utr-59Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_441 278481..278616 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1248bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGTAAACAGCAGTACAAGCAACTCATCACCGCACGTCTGCACCACCTTTG
GCTCTTGGCACCCCGCTCTATCTCGTCCCTCCGTAGTGGAAGCAGTGCCA
GTGCCAGTACCAGCAGTGGGAAAAAGAGGACGCGAAATGATCCGGCTGAA
GAAGAAACAAGATGATGAGAAGGCCGCTGAGGCAGCAGCGGCAATGGAGA
TAGACGAGGAAACACCATCGAACGCGGCCGCTCAACCAAAAGCGGACGAG
GAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATTGGCGGCCGAAGGGC
CAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAAGACACCGGGAGAGA
TTCGTATACAGAAGGACATTGCGGACTTGGATGGCGGAAGCGTAGCAGAG
ATCACTTTCCCAAACCCCAACAACCTTACTTCCTTCAAGGTCAAGGTGCA
GCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCACTTTACCTTTACTA
TTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGCTGTGCGAGACCAAA
ATCTACCACCCCAATATAAACTTGCAGGGGAACGTGTGCCTCAACATCTT
GCGGGAAGACTGGAAGCCGGTGTTGGATATCAACGCGGTTATCTACGGGC
TCATCTACCTGTTCTACGAGCCAAACCCCGAGGACCCCCTCAACCACGAA
GCTGCAGAGCTCTACCGCGACAACATAAGCCAATTCGAGCGAACAGTGAA
GAGGACTCTCGCAGGCTGCGTCATGCACGGGGAGACATTCCAACGACTGA
TTTGACTTGATGACATCCTGCTCAGTGTATGTTTTTGTTGTTTTTGGACG
CTGAGGGTTGAGCAAAGACGTTTTGGGAAGGCTGGCTGAAGACCCTCGAT
CGACTGGCTCGGTCTCCGAAGCAGCCCTTGATCTTGCTCGGATGGCAACT
GCACAGTTGGAAGAGAATGCTCGAATGTATTATACGCGGCGGCGTTATGC
ACACAAGCATCTCCTGCGTTTTCCAGACATGGTTTTGGACCCGCCGTGCA
TTCAACGAACGTAAATTGTGCGATTTCGATGAAGCCGCCAAGAGCTGGGT
TCGCTCGAAATGCATCCTGGTCGGTAACGACAAAAGCTCTCAGACTTGCG
CAACCACTACCATAGTTGACGTGTTTTCGTATTGTTGAGTTGCTTTCTCC
GCCGTAATGTCCCATCTTCATGCGGGTCTCGCACATAAGCACCCCGGG
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protein sequence of EsuBft100_18a-0001

>EsuBft100_18 ID=EsuBft100_18|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MIRLKKKQDDEKAAEAAAAMEIDEETPSNAAAQPKADEEKAAGKLHVLGI
GGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSF
KVKVQPDSGFWKGASYHFTFTIPALYPHDPPKVLCETKIYHPNINLQGNV
CLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQF
ERTVKRTLAGCVMHGETFQRLI
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mRNA from alignment at Scaffold_441:275138..278616-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3479bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)
AGTAAACAGCAGTACAAGCAACTCATCACCGCACGTCTGCACCACCTTTG
GCTCTTGGCACCCCGCTCTATCTCGTCCCTCCGTAGTGGAAGCAGTGCCA
GTGCCAGTACCAGCAGTGGGAAAAAGAGGACGCGAAATGATCCGGCTGAA
GAAGAAACAAGATGTAAGAGCGCTTCGAATTTTTCTCGATTGGCATCAAA
ACTGCTCGCGGTCTCTATTGCCTGCTCTGTCGAGCTCGTTCGTTGTGTCC
GATCAAGAGGACGCTGGCAATCCAGTTTCGAGGTCGAAAAAATTATTGCA
ATTCGGGGCCAACATGGGGACCACTGCCGGCTGTGCTGTAACCCTGTTGT
ATTCTGTGAACGAGTCGAAAGTCCTTTGAGTTCAAACAGAACCTGGGATG
GATGTCCCCACAGGTCCCCTGTCCCCCAACAGTAGTCTGCAGCAGCAGCC
ATGAGTTGCGTAGCATCCAGCCGAGAGTGAGAGTGGTCTTGGGGTTTTGC
ATGCTTCCTTCGTCTCGCCTTGTCACAGAAGATTCTGGCGTGCTTTTGTA
ATGGTGTAATGATATCTGCAAAGTCCGAAGGATGCTCTCTCACTTGGCCC
GCGTTCGCGGTACACCGCTGTGGGAAAAGGGACCGCCGGGTTCCATTCAT
ATGCACAGTCTACAATGAGCATCGCAGGCATGGGACGGCCCATGAGAACG
CGGCAGCAGTTGTTAGACCTACAGTCAGCAATCTTGGAGAATGAGCGTGA
TTAAATTGCATGTTGAAATCGGTCCTGACAAAATCCCTTTCATCCAGTTT
CGCCCACAGCTACAGCAAAAGAGTTGGGTTACTTGAGGCCGGTTTGACCG
CTCGTAGCATGATGTGAGCACAGCGTATGTTGGTTGGTAATGGACTACAT
TCCGGTGCGCCGGTAAATTCACTTGGTGACCTCGTAACCTGACTCTTCAT
GTACACTGCGAGTTGGAATTTCTCTGGAGTGAAAAATCGTAATTTGGGCG
AGGAAAGCACGCTTGGACAGCGCATGTTGCTGTGGTCTTGTATGCGGTGA
GTAATCACAACAATGAGCGAAGGATATGCCGCCCTTCTCGCGTCAAATAC
GGAGGGCGAACACCGCAGGGAGAACGGGAAACATCCGAACAAATCCAGCG
TTTACCTTCCTCCTGTGCTACCCCCGACTGGTACGTCGAACATATACTTG
CAAGTGCCAAGAAGAAAGACAAGACGAAACAGAGACACACACCACACCCC
ACTCACACCCGTCTGTGCTCGACAACAACTTGTGTGCCGAACCGCTTGGT
ACCATGATTTCAGGATGAGAAGGCCGCTGAGGCAGCAGCGGCAATGGAGA
TAGACGAGGAAACACCATCGAACGCGGCCGCTCAACCAAAAGCGGACGAG
GAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATTGGCGGCCGAAGGGC
CAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAAGACACCGGGAGAGA
TTCGTATACAGAAGGGTGAGTGAGCCTGACAACATGGACGCAGCAGCTAT
TCCATGATAAATGCCTGAGCAGCGAGTACGTTGGAGGACATCTCGTCATC
ATTACATGTTCAGTGTGATCAAGGTTCGATACACACTCATTGAACACCCT
GATTTGTGTTGTACCAATCGTGCTGCTCTCGGAAACTGCAGACATTGCGG
ACTTGGATGGCGGAAGCGTAGCAGAGATCACTTTCCCAAACCCCAACAAC
CTTACTTCCTTCAAGGTCAAGGTGAGAATCGATATGTAGGGCTTTGATCA
TCTCAACTTTTGGAGCTGGCGATCCGAACTTCTTGCACCCCGGGCGCGAT
GTAATGCCAGTTAAGTTCATTAATCATCATCGTGGGCTACGTTGCGGAGA
GACCAAGATCATCGATTGAACGTAATTCACGACCTGGACCAGGCTTCTGG
GTTTTCCATTCATGTTCTTTTATAAGCATGCACGGCGGTTCTTTTTTGGT
TTACGTGACACACCTCTGCGTCCTTTACATCCGCACTTACTCCTCCGATC
GTGCGTGTGGAATGTTTTGCCACAGGTGCAGCCGGACAGCGGGTTCTGGA
AGGGCGCGTCGTACCACTTTACCTTTACTATTCCTGCGCTGTACCCTCAC
GACCCACCCAAAGTGAGCAACGCTACGGTTAAGCACACAACCAGGTTGTG
TACACAACAGTAAGCACAATCGTACGGGCCAGTTTTCCTCAAGCCCTTTT
GCTCCGCCCTCGTCGTTGTCCACTTGTTTCGGATTTTTTTCTGAGAGTTT
TCCCCCGTCCGGTCCTTCCTCGCGGTGCAGGTGCTGTGCGAGACCAAAAT
CTACCACCCCAATATAAACTTGCAGGGGAACGTGTGCCTCAACATCTTGC
GGGAAGACTGGAAGCCGGTGAGTCTTCGTGGCTGTGCTGACATGCGGTTT
TCCGAGTTGTTGGAGTGTTTTTTTATCTCCAACCTGTCCTGTACCTGGAT
TCGAGTATCAGCTGTCTCACGAACAACCTGCTGTCGAGTGTGATGGCCTG
AAACGCCCGGCATGAGTATCTCCAAGTCGGTCTGGTGAGTGGGTTGCACA
CGGCAGGCTTGGCGCAATTGCGATATGTTTTCTCCATGAATGCGGCTTTC
GGCAAGCTTGGTCGCGCGAGGGACCAGTACGTGCTGTGCTTTTGCAGCGC
GAGCGGACTACGCCGTACCAGTATCCCCCGAGGCCGAGCGCCACCGAGGA
TGACTACAGCGGCCGCATTTGGTGTGATTAACTTTGATGTTGGTGTAAAC
TGTTGAACTCGATTGGTTCATAAATGCTGGGATTATCCGTCGCTGTGCAG
GTGTTGGATATCAACGCGGTTATCTACGGGCTCATCTACCTGTTCTACGA
GCCAAACCCCGAGGACCCCCTCAACCACGAAGCTGCAGAGCTCTACCGCG
ACAACATAAGCCAATTCGAGCGAACAGTGAAGAGGACTCTCGCAGGCTGC
GTCATGCACGGGGAGACATTCCAACGACTGATTTGACTTGATGACATCCT
GCTCAGTGTATGTTTTTGTTGTTTTTGGACGCTGAGGGTTGAGCAAAGAC
GTTTTGGGAAGGCTGGCTGAAGACCCTCGATCGACTGGCTCGGTCTCCGA
AGCAGCCCTTGATCTTGCTCGGATGGCAACTGCACAGTTGGAAGAGAATG
CTCGAATGTATTATACGCGGCGGCGTTATGCACACAAGCATCTCCTGCGT
TTTCCAGACATGGTTTTGGACCCGCCGTGCATTCAACGAACGTAAATTGT
GCGATTTCGATGAAGCCGCCAAGAGCTGGGTTCGCTCGAAATGCATCCTG
GTCGGTAACGACAAAAGCTCTCAGACTTGCGCAACCACTACCATAGTTGA
CGTGTTTTCGTATTGTTGAGTTGCTTTCTCCGCCGTAATGTCCCATCTTC
ATGCGGGTCTCGCACATAAGCACCCCGGG
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Coding sequence (CDS) from alignment at Scaffold_441:275138..278616-

>EsuBft100_18a-0001 ID=EsuBft100_18a-0001|Name=EsuBft100_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_441:275138..278616- (Ectocarpus subulatus male Bft15b)
ATGATCCGGCTGAAGAAGAAACAAGATGATGAGAAGGCCGCTGAGGCAGC
AGCGGCAATGGAGATAGACGAGGAAACACCATCGAACGCGGCCGCTCAAC
CAAAAGCGGACGAGGAGAAGGCCGCAGGGAAGCTTCATGTTCTGGGGATT
GGCGGCCGAAGGGCCAAGAGGGGTAGTGCGAAGGCAACCGGAACAAAGAA
GACACCGGGAGAGATTCGTATACAGAAGGACATTGCGGACTTGGATGGCG
GAAGCGTAGCAGAGATCACTTTCCCAAACCCCAACAACCTTACTTCCTTC
AAGGTCAAGGTGCAGCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCA
CTTTACCTTTACTATTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGC
TGTGCGAGACCAAAATCTACCACCCCAATATAAACTTGCAGGGGAACGTG
TGCCTCAACATCTTGCGGGAAGACTGGAAGCCGGTGTTGGATATCAACGC
GGTTATCTACGGGCTCATCTACCTGTTCTACGAGCCAAACCCCGAGGACC
CCCTCAACCACGAAGCTGCAGAGCTCTACCGCGACAACATAAGCCAATTC
GAGCGAACAGTGAAGAGGACTCTCGCAGGCTGCGTCATGCACGGGGAGAC
ATTCCAACGACTGATTTGA
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