EsuBft100_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft100_12a-0001
Unique Name	EsuBft100_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_441	contig	Scaffold_441:214676..219185 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LRT4
ProteomeId	EsuBft100_12
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	PTHR12309
Protein domains	IPR023391
Protein domains	IPR022943
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR001901
Protein domains	TRANSMEMBRANE
Protein domains	IPR008158
Owner	apollo_admin@sb-roscoff.fr
Note	protein transport protein sec61 subunit gamma os:caenorhabditis elegans gn:emo-1 pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	2052
Hectar predicted targeting category	other localisation
Evalue	1.28e-41
EggNOG OGs	COG2443@1\|root,KOG3498@2759\|Eukaryota
Ec32 ortholog description	Protein translocase SecE domain
Ec32 ortholog	Ec-08_002350.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	SEC61G
KEGG ko	ko:K01262,ko:K07342
KEGG TC	3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathway	ko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG Module	M00401
GOs	GO:0000003,GO:0001555,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0006810,GO:0006886,GO:0007276,GO:0007281,GO:0007292,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0009994,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016049,GO:0019953,GO:0022412,GO:0022414,GO:0022804,GO:0022857,GO:0022884,GO:0030154,GO:0030728,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0034613,GO:0040007,GO:0042886,GO:0042887,GO:0044703,GO:0045184,GO:0046907,GO:0048468,GO:0048477,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055085,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:1904680
EC	3.4.11.9
Description	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko02044

Cross References

External references for this mRNA


Database	Accession
GO	0001555
GO	0006412
GO	0002479
GO	0002119
GO	0030728
GO	0030176
GO	0009792
GO	0015450
GO	0071806
GO	0018996
GO	0006614

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft100_12a	EsuBft100_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_441 214676..219185 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_12a-0001	EsuBft100_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_441 214741..217408 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_12a-0001-exon	agat-exon-35316	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 214676..214837 +
EsuBft100_12a-0001-exon	EsuBft100_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 217061..217166 +
EsuBft100_12a-0001-exon	agat-exon-35317	Ectocarpus subulatus male Bft15b	exon	Scaffold_441 217402..219185 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_12a-0001-exon	agat-five_prime_utr-53	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_441 214676..214740 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_12a-0001-cds	EsuBft100_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_441 214741..214837 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft100_12a-0001-exon	agat-three_prime_utr-89	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_441 217409..219185 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_441:214676..219185+
coding sequence from alignment at Scaffold_441:214676..219185+

spliced messenger RNA

>EsuBft100_12a-0001 ID=EsuBft100_12a-0001|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2052bp|location=Sequence derived from alignment at Scaffold_441:214676..219185+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGTCACCGTCACTGATCCATCAACGCCCTTCTTCAACGCCGCGTAGCG
CAAAACGAAGTCACCATGTCAGACGTCAATGAACTTTTGATTCAACCCCT
ACAAAAGTTCTCCAAGGACTCGATGCACCTCATCAAAAAGTGCACAAAAC
CCGACCGAAAAGAGTTCATGCAAGTGGCCAAGGCCACCACAGTCGGGTTC
CTGGTCATGGGTTTCATTGGATTCTTCGTCAAGCTCGTCCACATCCCAAT
CAACAACATTTTGATGGCAGGATGACTTGACTAGGACTCGTTTGGGAACC
GCTCGGCGGAATGGGGAATACGATGCAGCTTCGAGTCTGGGTGCGTGGTG
AAAAACGCAGTGATCGCCGAATATCATGATGGACGCCGGTTGCCTCGTGA
ACCGACTTAAGAGTCAGCCAAGCGAATAGTCTCGTCACGTCAAAGTACTT
GGCTTCAAAGTACGGGTGATGTCCGAAGGGATCGGTAGGATCGGATAGAT
GCTCCTCGGAAGATGGGCACCGCGGGGCGCGCAAGACATTTCGAACGACG
GAGATACGTCCGATAACGGTGTGGTGTACCGTTGCGTTGCTGTAGGTATG
ATGTTTGGATGTTTTGTTGTGAACGGCTGGTGCACGATAACGGTGTTGTT
TAACACGGGAGAATGCTCATCTGATTTTATGTGTCTGGACGTAGTGTCCC
AACACCATGAAGGGTCACGCCGTTTTTCCACTCGGTACTTGGGCTCCCGT
CAAGCATGTCGCCTGGTCGTGTTTCACCCTCAATGCTGACACCGTTGTCT
GAAACAGAATCGGTGTCGAGTTCAAAGTGCCTCTGTCCAGTGCAAACACC
CAACAAGGGTGCGTGAGGATGAAAGCATACGCTCCCCACAGCGTCAGTCT
GATTTTCGAGCGAACCGACAAGAGATTGGCTTTCAGTGTCGTAGACAAGG
GCCCGTCGCTCTGTAGAACCAGTTGCCAAGTACCGCCCGCTTGGATCGAC
GTCAAACCCAATTCGCTGGTTCGTGTCCACTTGACGTGGGAGGGTGTAGA
TTGCCTGCGAGTGGGATGCACAGCATGGACGACATGGCGAGGGAGCGTTG
GATGTCACGGCATTTTTTCAACACAAAAGCGAGTTAAACCGAGGTACGCT
ACATGCATTGGATGGTCCAGTCAAATCATGCCTCCCCTTGTGATCAATCC
ACCGTCAAGGGCATATACTCCTTTATCTTTGCTGGAGTTCGTAGCTAAAA
GCCCTCAGTGTTTTGCGGCACGAACACACCATGGTTGGATCAACTCCGAA
CGTGAACGAGCGGGAGCAGAAAGAAGAGGCAACACGGAACGATGGAGGCG
CCCAATCAAGGCCTCCCCCCGTGTTTTTCAACCCTGGCCGGAGGCCTACC
ACGTTTTCTACCCGCTTCGTATCCGGACTGAGAGGAAAGCTCACAACAAG
ATGTGATTTGTCTGGTGGGCGGTCCATCTCCAGGGTCTCTCGCGACAAAT
CGATTAGGAGATGAGGGGACTTTCGCAGACGCTTCCAGAAAAAGTCACGG
GCCTTTGATGCGCACACATAGCCTTGCGGAATGTCTCAGATGGGAATGCT
GTTGTGGCGTCCAAGGTTACTCACCTGTTTCGTTTGCCGAAGGTCCCAGC
ACACGATGGCAGTGTCCTTACGTGAGCCAGAGAAGAGATACCGGCCGTTG
GGTGCAAACTTGAGGTGTGTAACGCCGCCCATTGTTGGCGTCGCCAACTC
TGCTACAGCGCGTGCACGACTGGAAAAAGCGGACGTAACGAAGGGAGCTT
GGTTTTGAGTATGCCGCAGTACCTGTCACTGGGGGCTACAATATGCGTAC
GAGCAGCTCAAATCGTACCATCACACAAATCATCTTGCCATATTCATTCA
TTGACAGCACGCGCAGGCAGGCAGGCTATTGGGCGGCGATACCATACTGC
GCATACCCATCACGTCGCCCTGATATATCGCATCACCTCCAGCAAGATGA
AACCACTGGCAACAGCTCTCGAAAACGATACGGTAACGCCAAACTTATGC
CT

protein sequence of EsuBft100_12a-0001

>EsuBft100_12 ID=EsuBft100_12|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MSDVNELLIQPLQKFSKDSMHLIKKCTKPDRKEFMQVAKATTVGFLVMGF
IGFFVKLVHIPINNILMAG

mRNA from alignment at Scaffold_441:214676..219185+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft100_12a-0001 ID=EsuBft100_12a-0001|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4510bp|location=Sequence derived from alignment at Scaffold_441:214676..219185+ (Ectocarpus subulatus male Bft15b)
GTTGTCACCGTCACTGATCCATCAACGCCCTTCTTCAACGCCGCGTAGCG
CAAAACGAAGTCACCATGTCAGACGTCAATGAACTTTTGATTCAACCCCT
ACAAAAGTTCTCCAAGGACTCGATGCACCTCATCAAAAAGTGCACAAAAC
CCGACCGAAAAGGTTAGTCAAACTTTCGTTCTGTTTCGTCGTCTGAGGTG
TGGTACGAGGGCATTTGGACGTTTGTTGTAGTTGCACCCAAGGCCTGTTG
ATAGCCCGTCGACACCGCCCAGCATCGATTCCCCTGTCCATTGCCACCAC
TGGAGTCCATGCGAGTGACTGGCTAGGGGGGTGTTGGGTCGTTAGGCTCC
GAAAAGAGAAAGAGAAACCCAGGGTGTGTGCGGTGTGCGGGCCCTATGTA
GCGAACGAAGCACAGGTGTCCAACCATCATCAGACTATCATTGAGACAGC
AGACTACCTCCATAGGGCCAGTGCCCAAATGATGGTGTTCGTGTCGTATT
GAACGGCGTCCGGTACGTGACACATTAGTTTTGTTCGCGTAACGGTGAAA
AGCAGATGCCATTACTTTATGTCAAGACAACTCGACGATTCTTGTCAGCG
ACGTGCAGACTTGCGCTCCGCTGACCACATCAGTAGGTTACTTAAGATAC
CACATCTCGGTGTGATACCATCGTGAGATATAGACTAAAGAGTCTATCAC
AAGGGTGCGGGGTGTGATATTATGTAGGGGGTGCGGTGTCATGCGGCTAG
TATGTGTGATGAAGTACACTCACAGGCCCCCCATCCGGCCGCTCCGATAC
ATATGACGGTGTGATGACCTCAGCCAGCCACAGCAGTTCACGCACACGAC
TTGAGAACGAGGTGCGACTTGCTTTTCGGTGAAGGCGGTGGTGCGGGCCT
CAGCAGTATGTGTGGTGTGATGCATGGCTGGTGAAGGAGTCTCAGCAGGT
ACTGCTCTTGTCCAGAAAGGAATGGCGTGTCTGAGCGTGCAGATTGGAGG
CACCATGGGAGTCTGTCTGACCCACGACCGTTTAAGCCGTATGCTCCCAG
TTGGGGTTGTACTGCATCGACGGCGGTATTATTGATATTCATGGCTTGTG
ACCACGGAAGGCATCGGCGTCAGTTAGACCAGTACGGACATTAGAAGGTA
CCGAGCGGAGACCGGAACGGCTTTCAATGTGAAGACAACAACAACAGCTA
CAAAAACGCCTGTGGCTCGCACGTTGCGCTTGTTTGTGACGCTGCTCACA
TGGTTCGATACGGGGGGTGCCGTGGATAGTGCACGGCTCAACGTGAGGGT
GTGGTATGCTATGTGATCGTGTAATTCAGCAGTACTCCTGTTTTGGTTCT
TTTTTCGGGACTCATAACAATTTGCGCAAGGGTATTTTTCTGTTCGTTTT
TGAAGGGGTTGTGGCATGTCGGTCACCTACGGTACATCGAGGCGGGAGAC
GTTGAGTACCGCCTATTAGGTGGGATACCCAGATATGTCCTCATCCACAG
AAAGATCGAAAAATATCGCTCCTGTTATTTGGGGGTGTACTGTGGTATGG
TAGTGCCAGAACTTGAGTTGGGGCATACCAAACTGCTGAATTTCTGCAAG
CCAAACTTGTGGATCTACACTGACCAGAAGCAACCAGCAGAGGAACAACG
TGGCATGACCACGTGTAAATTTTGGTAGATTGCCCGATTTGGAATCTGGG
TGTGTGGTGGAATTTCGATAGCCGTTCGTGGGAGAGCTAGGATGCCTTGC
GAAAAGCGTTGGAAAACGCATGTAACCTCACGTTGGCACTCGGTGCTCGG
CATCAAGACGTTCATGACTACAGATGCTCCGTGGATTCTGACGTGCCCCT
CTGTAAAAGATACGACTGAGACGATTAGTGACTCTAGACTGCGGTCAAAA
ACGCAATGGGAGAAAAGTTGCAATAGGTACAACGCTGTCAGCCCACAGCA
AGGGAGGTGGGGAAACGTACGGGCGACAGGATTGAATATGGTCCTTTGGG
TGGTTCACGTAGCAACGTTGCAACCCCCTACACGCTGCTGGCCTGTGTTG
TGTATTGGCTTGATTTGATACGCAATTCTGAGGGAGGAAGCAGTGAATAA
CCGGCACCATTGATAGCAGCGTGGCACCATAAAAGGGCGGTGAGCATTCC
TCTGTACAGTCACAGGCCGCAGGCAGATTGCGAGATCGTACAGCGCTCGG
GCGAAGTGAATGATTCCTGGAAAGGGTGCCGACGCAGTAGTCTTCGAAAA
CATTGCGACTTTCCTCGAGTACCACCGAAGCGCGCGTGGTGTGTAGATGG
TGACCGCCTTTCCTTTGGACATTCGAATAACTGCCACTCCACCTCATAAA
CGACCCGTTTCCTTTGTATGGCAATGTCCGCGCAGAGTTCATGCAAGTGG
CCAAGGCCACCACAGTCGGGTTCCTGGTCATGGGTTTCATTGGATTCTTC
GTCAAGCTCGTCCACATCCCAATCAACAACATTTTGATGGCGTAAGTTTC
GGGCGCATGTGTGTAGAGCAAAACGCTCATGTCCTCTCCAGTTGCGATAA
AGATTCATCCAAATTTCGAAGTTGATCACTTGCCCTTTCTCTGTGAAGCG
ACCCATAACCCGTCCACTGTCGTGTTTCTTTTGGTGTCTATGCCTCTGCT
CGTCTCTCGGCTTTGCCCTTTTTGTGCCCCTCTCCTCTCTAAATTCCCTC
CGGGCTCACGCGACCTATATCTTCAGAGGATGACTTGACTAGGACTCGTT
TGGGAACCGCTCGGCGGAATGGGGAATACGATGCAGCTTCGAGTCTGGGT
GCGTGGTGAAAAACGCAGTGATCGCCGAATATCATGATGGACGCCGGTTG
CCTCGTGAACCGACTTAAGAGTCAGCCAAGCGAATAGTCTCGTCACGTCA
AAGTACTTGGCTTCAAAGTACGGGTGATGTCCGAAGGGATCGGTAGGATC
GGATAGATGCTCCTCGGAAGATGGGCACCGCGGGGCGCGCAAGACATTTC
GAACGACGGAGATACGTCCGATAACGGTGTGGTGTACCGTTGCGTTGCTG
TAGGTATGATGTTTGGATGTTTTGTTGTGAACGGCTGGTGCACGATAACG
GTGTTGTTTAACACGGGAGAATGCTCATCTGATTTTATGTGTCTGGACGT
AGTGTCCCAACACCATGAAGGGTCACGCCGTTTTTCCACTCGGTACTTGG
GCTCCCGTCAAGCATGTCGCCTGGTCGTGTTTCACCCTCAATGCTGACAC
CGTTGTCTGAAACAGAATCGGTGTCGAGTTCAAAGTGCCTCTGTCCAGTG
CAAACACCCAACAAGGGTGCGTGAGGATGAAAGCATACGCTCCCCACAGC
GTCAGTCTGATTTTCGAGCGAACCGACAAGAGATTGGCTTTCAGTGTCGT
AGACAAGGGCCCGTCGCTCTGTAGAACCAGTTGCCAAGTACCGCCCGCTT
GGATCGACGTCAAACCCAATTCGCTGGTTCGTGTCCACTTGACGTGGGAG
GGTGTAGATTGCCTGCGAGTGGGATGCACAGCATGGACGACATGGCGAGG
GAGCGTTGGATGTCACGGCATTTTTTCAACACAAAAGCGAGTTAAACCGA
GGTACGCTACATGCATTGGATGGTCCAGTCAAATCATGCCTCCCCTTGTG
ATCAATCCACCGTCAAGGGCATATACTCCTTTATCTTTGCTGGAGTTCGT
AGCTAAAAGCCCTCAGTGTTTTGCGGCACGAACACACCATGGTTGGATCA
ACTCCGAACGTGAACGAGCGGGAGCAGAAAGAAGAGGCAACACGGAACGA
TGGAGGCGCCCAATCAAGGCCTCCCCCCGTGTTTTTCAACCCTGGCCGGA
GGCCTACCACGTTTTCTACCCGCTTCGTATCCGGACTGAGAGGAAAGCTC
ACAACAAGATGTGATTTGTCTGGTGGGCGGTCCATCTCCAGGGTCTCTCG
CGACAAATCGATTAGGAGATGAGGGGACTTTCGCAGACGCTTCCAGAAAA
AGTCACGGGCCTTTGATGCGCACACATAGCCTTGCGGAATGTCTCAGATG
GGAATGCTGTTGTGGCGTCCAAGGTTACTCACCTGTTTCGTTTGCCGAAG
GTCCCAGCACACGATGGCAGTGTCCTTACGTGAGCCAGAGAAGAGATACC
GGCCGTTGGGTGCAAACTTGAGGTGTGTAACGCCGCCCATTGTTGGCGTC
GCCAACTCTGCTACAGCGCGTGCACGACTGGAAAAAGCGGACGTAACGAA
GGGAGCTTGGTTTTGAGTATGCCGCAGTACCTGTCACTGGGGGCTACAAT
ATGCGTACGAGCAGCTCAAATCGTACCATCACACAAATCATCTTGCCATA
TTCATTCATTGACAGCACGCGCAGGCAGGCAGGCTATTGGGCGGCGATAC
CATACTGCGCATACCCATCACGTCGCCCTGATATATCGCATCACCTCCAG
CAAGATGAAACCACTGGCAACAGCTCTCGAAAACGATACGGTAACGCCAA
ACTTATGCCT

Coding sequence (CDS) from alignment at Scaffold_441:214676..219185+

>EsuBft100_12a-0001 ID=EsuBft100_12a-0001|Name=EsuBft100_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_441:214676..219185+ (Ectocarpus subulatus male Bft15b)
ATGTCAGACGTCAATGAACTTTTGATTCAACCCCTACAAAAGTTCTCCAA
GGACTCGATGCACCTCATCAAAAAGTGCACAAAACCCGACCGAAAAGAGT
TCATGCAAGTGGCCAAGGCCACCACAGTCGGGTTCCTGGTCATGGGTTTC
ATTGGATTCTTCGTCAAGCTCGTCCACATCCCAATCAACAACATTTTGAT
GGCAGGATGA