EsuBft1009_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1009_5a-0001
Unique NameEsuBft1009_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:147113..148880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGX4
ProteomeIdEsuBft1009_5
Protein domainsIPR006689
Protein domainsIPR005225
Protein domainsIPR027417
Protein domainsIPR006687
Protein domainsIPR024156
Protein domainsPTHR11711
Ownerapollo_admin@sb-roscoff.fr
Noteadp-ribosylation factor os:vigna unguiculata gn:arf pe:2 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length470
Hectar predicted targeting categoryother localisation
Evalue1.34e-86
EggNOG OGsCOG1100@1|root,KOG0070@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameArf1
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
DescriptionGTP binding
COG categoryBDLTU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0010267
GO0004571
GO0009616
GO0006306
GO0006007
GO0006886
GO0005525
GO0006346
GO0009733
GO0003700
GO0005507
GO0005829
GO0016004
GO0005774
GO0009506
GO0005215
GO0003677
GO0055085
GO0005515
GO0016192
GO0006499
GO0007267
GO0046686
GO0007264
GO0006471
GO0035196
GO0010150
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_5aEsuBft1009_5aEctocarpus subulatus male Bft15bgeneScaffold_106 147113..148880 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_5a-0001-exonagat-exon-87396Ectocarpus subulatus male Bft15bexonScaffold_106 147113..147186 +
EsuBft1009_5a-0001-exonEsuBft1009_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 148012..148138 +
EsuBft1009_5a-0001-exonagat-exon-87395Ectocarpus subulatus male Bft15bexonScaffold_106 148612..148880 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_5a-0001-exonagat-five_prime_utr-46Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_106 147113..147120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_5a-0001-cdsEsuBft1009_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 147121..147186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_5a-0001EsuBft1009_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 147121..148880 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1009_5a-0001 ID=EsuBft1009_5a-0001|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=470bp|location=Sequence derived from alignment at Scaffold_106:147113..148880+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGGAACCATGGGACTCGCATTCTCCCGACTGTGGGAGCGTATGTTCGGC
AAGAAGGAGATGCGTATACTGATGGTGGGTCTGGACGCGGCCGGTAAGAC
GACCATCCTGTACAAGCTCAAGCTCGGAGAGGTGGTGACAACTATCCCCA
CCATCGGGTTCAACGTGGAGACTGTAGAATACAAAAACATTAGCTTCACC
GTTTGGGACGTCGGAGGGCAGGACAAGATCAGGCCGCTGTGGAGGCACTA
CTACCAGAACACGCAGGGGCTGATCTTTGTCGTGGACTCCAACGACAGAG
ACCGCGTCGATGCCGCACGGGACGAACTCCACCGCATGCTCAACGAGGAC
GAACTGCGCGAGTCCATCCTTCTCGTGTTCGCTAACAAGCAGGTGAGCAT
TGTGTACCGGGGTAGGCATGTGCATCTGCCCACGTACAGCGCCGTGCTCG
TCGTCGGCGCGCTTTGCTGA
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protein sequence of EsuBft1009_5a-0001

>EsuBft1009_5 ID=EsuBft1009_5|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=153bp
MGLAFSRLWERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRV
DAARDELHRMLNEDELRESILLVFANKQVSIVYRGRHVHLPTYSAVLVVG
ALC
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mRNA from alignment at Scaffold_106:147113..148880+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1009_5a-0001 ID=EsuBft1009_5a-0001|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1768bp|location=Sequence derived from alignment at Scaffold_106:147113..148880+ (Ectocarpus subulatus male Bft15b)
GCGGAACCATGGGACTCGCATTCTCCCGACTGTGGGAGCGTATGTTCGGC
AAGAAGGAGATGCGTATACTGATGGTACGAGATAGGGAGAGGCAGTAAGG
GTGTTGGGTTGTGTCCAGCGGCAGCTCGCCACTGCTGCTGTACTACCTGG
TTTTTTTGTTCTTGATCACGCCCTCCATCTGCTGCCCCCATTCCCCGATC
AGAAACCGCCCCTGATTTTGACTTGTACTGCTTTTCGATGTGGATTTCTC
CTTTCGCAATAGCATGTCGTGCACGATACGGGGATGCGACACTTAGTGGG
GCCGCAGATGACACGCTCGTCTCGTCTGAACTCTCCCCGAGGAAACACAG
CATGTACAGCGTCAATGCTTACGATGTATCAACAGAAGTGTTACGCAATC
AATATGTGCAGGACAGCAGCACGTAATATCTCATCGAACCTTTTCTGACC
CCCGTTGACGCAACCATCTCTTCCCAGGCCAGAGGGCAAGAACGCAATAG
AACAGAAGACCTTACATGTGCCTCTTGCCACGCGCGTGTCCGTTTCTCAA
ATATTTTGTTCGAATTATCATCCGCCGAAATGAAGGGCTGATCATCCGCA
CCGTTTTTCATCGACCTATCGTGGAGATTCCTTAATTTTCGGCATAATGT
TTTTCGGGAGACCCCCCCCCCCCCTTGGTCGAAACCTCCCGTCACTGCAG
ATGGGATCTACTACTATCTACCCAGCGGGCAGGTTACAACCGGCTTGTTG
TTGACAGGCGGGGGTTGCTGAGTGTCGTACGTTCTTCGCCGCTGCTGTGG
CGTAATAGTCCGCCCGCATTCATCTCCGGATCAGACGGCTGCTGCTGTTT
TTTTGTTGCTTGACCGCGGTGCTGTCTGTCCCCTTGCGTGGCACGAAAGG
TGGGTCTGGACGCGGCCGGTAAGACGACCATCCTGTACAAGCTCAAGCTC
GGAGAGGTGGTGACAACTATCCCCACCATCGGGTTCAACGTGGAGACTGT
AGAATACAAAAACATTAGCTTCACCGGTAAGCAGCATGCGTTTCCCAAGG
GTAGGGTGTGATACTGGGCAGAGGGGACATATCCGCCCGTTCCCCAACAG
GCACTTAATTTGGACGAACTTACGACCGTGAGTCCCCTAAAACGAAACCG
AAAATCATGAATTCGCACATGTATCTCTGTACATGGGTTCGGAGGCACAC
GCCGCGTTCAACTGGAGAATATATAAACGTTGGACGCAGCAGTGTTGGTG
GGAGACGCGAGCATCGACTCGAAATGTTGCGCTCTGTAAGGCAGGCACCG
GCAGTTTCCTCCATCTAGCGACTCTGGCACGAACACATAGACTTTGCTTT
TTGAGTTTGTGTCTTGAAGCCACACACAAAACCTCAAGATCATTTTAGAT
ACGTACAAGGGGAACCGGTGGCGAAAGCTTTGTTAGTGCGCATACATGCA
CGACGCCGCACAAACACTAACGTTGTTTTCGCCCGTTCGTCGACGACAGT
TTGGGACGTCGGAGGGCAGGACAAGATCAGGCCGCTGTGGAGGCACTACT
ACCAGAACACGCAGGGGCTGATCTTTGTCGTGGACTCCAACGACAGAGAC
CGCGTCGATGCCGCACGGGACGAACTCCACCGCATGCTCAACGAGGACGA
ACTGCGCGAGTCCATCCTTCTCGTGTTCGCTAACAAGCAGGTGAGCATTG
TGTACCGGGGTAGGCATGTGCATCTGCCCACGTACAGCGCCGTGCTCGTC
GTCGGCGCGCTTTGCTGA
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Coding sequence (CDS) from alignment at Scaffold_106:147113..148880+

>EsuBft1009_5a-0001 ID=EsuBft1009_5a-0001|Name=EsuBft1009_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=462bp|location=Sequence derived from alignment at Scaffold_106:147113..148880+ (Ectocarpus subulatus male Bft15b)
ATGGGACTCGCATTCTCCCGACTGTGGGAGCGTATGTTCGGCAAGAAGGA
GATGCGTATACTGATGGTGGGTCTGGACGCGGCCGGTAAGACGACCATCC
TGTACAAGCTCAAGCTCGGAGAGGTGGTGACAACTATCCCCACCATCGGG
TTCAACGTGGAGACTGTAGAATACAAAAACATTAGCTTCACCGTTTGGGA
CGTCGGAGGGCAGGACAAGATCAGGCCGCTGTGGAGGCACTACTACCAGA
ACACGCAGGGGCTGATCTTTGTCGTGGACTCCAACGACAGAGACCGCGTC
GATGCCGCACGGGACGAACTCCACCGCATGCTCAACGAGGACGAACTGCG
CGAGTCCATCCTTCTCGTGTTCGCTAACAAGCAGGTGAGCATTGTGTACC
GGGGTAGGCATGTGCATCTGCCCACGTACAGCGCCGTGCTCGTCGTCGGC
GCGCTTTGCTGA
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