EsuBft1009_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1009_4a-0001
Unique NameEsuBft1009_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:151993..152278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGX3
ProteomeIdEsuBft1009_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length16
Hectar predicted targeting categoryno signal peptide or anchor
Evalue7.36e-19
EggNOG OGsCOG0508@1|root,KOG0557@2759|Eukaryota
Ec32 ortholog descriptionSingle hybrid motif
Ec32 orthologEc-11_000970.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondihydrolipoyllysine-residue acetyltransferase activity
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_4aEsuBft1009_4aEctocarpus subulatus male Bft15bgeneScaffold_106 151993..152278 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_4a-0001-exonEsuBft1009_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 151993..152013 -
EsuBft1009_4a-0001-exonagat-exon-87394Ectocarpus subulatus male Bft15bexonScaffold_106 152135..152278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_4a-0001-cdsEsuBft1009_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 151993..152013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_4a-0001EsuBft1009_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 151993..152278 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1009_4a-0001 ID=EsuBft1009_4a-0001|Name=EsuBft1009_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=165bp|location=Sequence derived from alignment at Scaffold_106:151993..152278- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACGATCCTCCGCAGGCGAATCATCTACGTTGATGTCCCTGGCTAG
AAATAAGGATAGCGAGCTTCTGAAGGCTTTCGAGGGTTGCTTCGAGGGTG
ACGAGTACAAGGGCGACATCGATGACGACTTGTTCCTTGCGCAGGCGGCT
GAAACGAGCGGTTGA
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protein sequence of EsuBft1009_4a-0001

>EsuBft1009_4 ID=EsuBft1009_4|Name=EsuBft1009_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MPRSSAGESSTLMSLARNKDSELLKAFEGCFEGDEYKGDIDDDLFLAQAA
ETSG
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mRNA from alignment at Scaffold_106:151993..152278-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1009_4a-0001 ID=EsuBft1009_4a-0001|Name=EsuBft1009_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=286bp|location=Sequence derived from alignment at Scaffold_106:151993..152278- (Ectocarpus subulatus male Bft15b)
ATGCCACGATCCTCCGCAGGCGAATCATCTACGTTGATGTCCCTGGCTAG
AAATAAGGATAGCGAGCTTCTGAAGGCTTTCGAGGGTTGCTTCGAGGGTG
ACGAGTACAAGGGCGACATCGATGACGACTTGTTCCTTGCGCAGGTGAAT
TCGGCGATGTTCAGACACCGTTCCAGACCTAACCGTTCGCGTTCCCGATG
CCTTGTTCAAGCGTATGTTCACTGTTGCTGAAGCAGTTCGTTGTGCTAAG
GCTGGCTTTGACTAGGCGGCTGAAACGAGCGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_106:151993..152278-

>EsuBft1009_4a-0001 ID=EsuBft1009_4a-0001|Name=EsuBft1009_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_106:151993..152278- (Ectocarpus subulatus male Bft15b)
ATGCCACGATCCTCCGCAGGCGAATCATCTACGTTGATGTCCCTGGCTAG
AAATAAGGATAGCGAGCTTCTGAAGGCTTTCGAGGGTTGCTTCGAGGGTG
ACGAGTACAAGGGCGACATCGATGACGACTTGTTCCTTGCGCAGGCGGCT
GAAACGAGCGGTTGA
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