EsuBft1009_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1009_3a-0001
Unique NameEsuBft1009_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_106contigScaffold_106:153534..154176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FGX3
ProteomeIdEsuBft1009_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length54
Hectar predicted targeting categoryother localisation
Evalue2.73e-06
EggNOG OGsCOG0508@1|root,KOG0557@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondihydrolipoyllysine-residue acetyltransferase activity
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_3aEsuBft1009_3aEctocarpus subulatus male Bft15bgeneScaffold_106 153534..154176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_3a-0001-exonEsuBft1009_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_106 153534..153946 -
EsuBft1009_3a-0001-exonagat-exon-87393Ectocarpus subulatus male Bft15bexonScaffold_106 154048..154176 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_3a-0001-exonagat-three_prime_utr-80Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_106 153534..153595 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_3a-0001-cdsEsuBft1009_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_106 153596..153946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1009_3a-0001EsuBft1009_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_106 153596..154176 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1009_3a-0001 ID=EsuBft1009_3a-0001|Name=EsuBft1009_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=542bp|location=Sequence derived from alignment at Scaffold_106:153534..154176- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAGCTGGTACCACGGCAGGCGGCGCCCTCCAGCGGTGAGATGAA
TGCATGGGTGCGGGTCAAGATCTTGTCCCGTATCAACAATACTTTGTCTT
CCCTCGAAGAGATTGAGTCGATTGTGCTGGTTGGTGACGTGGTCTGCGAA
ATCGAGCTGGAGCATTTCTCCGTGGGGGTGAAAGTCGAGACCACGGGCTT
CCTCGCTGAGATACGTGAGTGGTTATGCGCAGCTGGCGCTGTTATGCTTT
TTTACTATGTGTCGTTTTCATGTCAAAACACTTCGATTGCCCCAGTCAAC
CGAAGCACCTTCTTAGCCCCAGGTTCCAGGATGACCGGTTCTCCCACTCG
TTCATTCCTGCACACATCGTGGCTTTCCGTAGTCTTCGCTCTTCTGCGCA
GCTGTGCTGCGTGCATCACGTTTTTGTTTTGGGCTAGTGTCGCTGCCCCT
TTGTATGTACGTCGTACAGCAGTAGTTTGAGACTCGATTATCCGGCAAGT
GTTTTCCGTTGTCCTTGTTTGCAGTGGTCGAAGCCGGCACCG
back to top

protein sequence of EsuBft1009_3a-0001

>EsuBft1009_3 ID=EsuBft1009_3|Name=EsuBft1009_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=159bp
MKQLVPRQAAPSSGEMNAWVRVKILSRINNTLSSLEEIESIVLVGDVVCE
IELEHFSVGVKVETTGFLAEIREWLCAAGAVMLFYYVSFSCQNTSIAPVN
RSTFLAPGSRMTGSPTRSFLHTSWLSVVFALLRSCAACITFLFWASVAAP
LYVRRTAVV
back to top

mRNA from alignment at Scaffold_106:153534..154176-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1009_3a-0001 ID=EsuBft1009_3a-0001|Name=EsuBft1009_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=643bp|location=Sequence derived from alignment at Scaffold_106:153534..154176- (Ectocarpus subulatus male Bft15b)
ATGAAGCAGCTGGTACCACGGCAGGCGGCGCCCTCCAGCGGTGAGATGAA
TGCATGGGTGCGGGTCAAGATCTTGTCCCGTATCAACAATACTTTGTCTT
CCCTCGAAGAGATTGAGTCGATTGTGCTGGTACTTCGCAAGTTCAATATT
CCCCCGAATCAGCTTCCGCAACAGCAGTCTGACTTCGCCGCACGTGGTGG
TTGACCCTCCGTGTACACCCGTGTGCACAGGTTGGTGACGTGGTCTGCGA
AATCGAGCTGGAGCATTTCTCCGTGGGGGTGAAAGTCGAGACCACGGGCT
TCCTCGCTGAGATACGTGAGTGGTTATGCGCAGCTGGCGCTGTTATGCTT
TTTTACTATGTGTCGTTTTCATGTCAAAACACTTCGATTGCCCCAGTCAA
CCGAAGCACCTTCTTAGCCCCAGGTTCCAGGATGACCGGTTCTCCCACTC
GTTCATTCCTGCACACATCGTGGCTTTCCGTAGTCTTCGCTCTTCTGCGC
AGCTGTGCTGCGTGCATCACGTTTTTGTTTTGGGCTAGTGTCGCTGCCCC
TTTGTATGTACGTCGTACAGCAGTAGTTTGAGACTCGATTATCCGGCAAG
TGTTTTCCGTTGTCCTTGTTTGCAGTGGTCGAAGCCGGCACCG
back to top

Coding sequence (CDS) from alignment at Scaffold_106:153534..154176-

>EsuBft1009_3a-0001 ID=EsuBft1009_3a-0001|Name=EsuBft1009_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=480bp|location=Sequence derived from alignment at Scaffold_106:153534..154176- (Ectocarpus subulatus male Bft15b)
ATGAAGCAGCTGGTACCACGGCAGGCGGCGCCCTCCAGCGGTGAGATGAA
TGCATGGGTGCGGGTCAAGATCTTGTCCCGTATCAACAATACTTTGTCTT
CCCTCGAAGAGATTGAGTCGATTGTGCTGGTTGGTGACGTGGTCTGCGAA
ATCGAGCTGGAGCATTTCTCCGTGGGGGTGAAAGTCGAGACCACGGGCTT
CCTCGCTGAGATACGTGAGTGGTTATGCGCAGCTGGCGCTGTTATGCTTT
TTTACTATGTGTCGTTTTCATGTCAAAACACTTCGATTGCCCCAGTCAAC
CGAAGCACCTTCTTAGCCCCAGGTTCCAGGATGACCGGTTCTCCCACTCG
TTCATTCCTGCACACATCGTGGCTTTCCGTAGTCTTCGCTCTTCTGCGCA
GCTGTGCTGCGTGCATCACGTTTTTGTTTTGGGCTAGTGTCGCTGCCCCT
TTGTATGTACGTCGTACAGCAGTAGTTTGA
back to top