EsuBft1007_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1007_8a-0001
Unique Name	EsuBft1007_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_519	contig	Scaffold_519:230621..232357 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1007_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	153
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_8a	EsuBft1007_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_519 230621..232357 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_8a-0001-exon	agat-exon-97109	Ectocarpus subulatus male Bft15b	exon	Scaffold_519 230621..231240 +
EsuBft1007_8a-0001-exon	EsuBft1007_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_519 231442..232357 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_8a-0001-cds	EsuBft1007_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_519 230621..230815 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_8a-0001-exon	agat-three_prime_utr-65	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_519 230816..231240 +
EsuBft1007_8a-0001-exon	agat-three_prime_utr-66	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_519 231442..232357 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_8a-0001	EsuBft1007_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_519 230621..230815 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_519:230621..232357+
coding sequence from alignment at Scaffold_519:230621..232357+

spliced messenger RNA

>EsuBft1007_8a-0001 ID=EsuBft1007_8a-0001|Name=EsuBft1007_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1536bp|location=Sequence derived from alignment at Scaffold_519:230621..232357+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCAACTTATTCGGCACTTATTCGGCGATGACCTGTCACAGGCTAG
GAAGCTACCGCCATTGGAGCTGATGAGGAGCATCCTCACTGATAGCGCCA
AGAAGTTCGCCCACCGTTCCACCCTCGGCAATGGCACATGGACACCCTAT
GCTGCCGCGACGTTCGAAGATGAGAGGAAGAAGTCCGCCGGGTAAGTGAC
AAGAGTGGAGAATGAACGGCCGCGTTTGGGTTTTTCTGTGTATGGGTACG
TGCTCTTGTGGTTTCGAAGAGACAACCTAGTTCCTGGAGGACTCTCCTGT
ACTTGCACGGACGGGTGGTGGGTTGCCAACGGGTGGGTGTTCCATGACAT
GTTTCGAGGTGCACGCACGCCGCCGAGATTCACATGTACTCACATGCACG
CCTTCGCCACGCGACGTTCATTATTCCAGGCTCGTCGCCTCCCCCACGGG
CAACCAGTTCTGCACGGTCGAGAACACCAACCTCGCCACCCTCAACACCC
GCGGCAACAGGGTCCTGCTGAGGTGAGGCGAGCCGGGGCAGAAGATGGAG
TGGTCCTGCACATGCGGGTTCCCCGCGAGATTCCAAATCCCTTGCTGCAA
CGTCATTGCCGTGGCTGGAGTGGCGGGTCTTTTTGTTTGCTGTGTCTGTT
CATTTTAGTTGTTTTCTGCGTGGTTTTGTTTTTGTTTTCTTTATCTCTTT
TGTCCTGTCTTCCCCGGATAGTGTATTTTCTCCATCTTTGCGGAGTACCA
AGATGAACCAGGCGATGAACTACAAAATCTGGCCTGTGATTTTACCTTTT
TTTAGGCAGCGTAGCCTGTGACCACAGGAATCGCTCGGTCAAGTGTTTGA
TGACACAAGAAATAAGCGGTCTACGTTCGCGCACTTCCAGTTGAACGAAC
TAGGACCCTTTCTCGAAAGCGATTCACACACCCGCACCCGCAACGGCAGC
TTCGAGGTTGTGGTTACATGCGGTGCTCCGGCCACAATACGTGAAAGCCA
AAGTCTAACCGATGCCAATATGTCTTAATGTATTCCTTCTCATGCTCCAT
GATTGGAAAACAGGTGGCACGATACTTTACTTTCGGTCAGTCCGCCGTCG
CGCGTCAGTATCCCTTTCGGCCGCGGTCGGCAGAAACTAACCCACGCTTA
TTCACTCCTGTCATTTCCCTCTTCTGTCGCTGTCCATGTTGCTCCCTCCT
TCAATACACACCGAGGAGGACAAGATGGACGCTGTCATGACCCTCATGAA
CCCGGCCTATCGCCTCAAATACCACCGCCAGACCTACGGCGACGACGCGT
ACCAGGTCATGCTGCCTGTGGCATCCACGCTGGAGGAAGATGACACCCTG
CTACCTCTTCTCCCCATGGATGGTTAGGCCGGCGCTCCCAAGAAACTTGG
GCCGAAAAAGTTCAAGGGGATCGCGGGGCGCGGGGACAAGTACGCTTCGT
CGTCGTTCAACACGCGAGTTTCTGAACTCGGCCCGACTGCATCCGGAACC
ACGGCGGCTCCCTTTCTGTCGCAGGGGGGTGCCACG

protein sequence of EsuBft1007_8a-0001

>EsuBft1007_8 ID=EsuBft1007_8|Name=EsuBft1007_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=64bp
MLQLIRHLFGDDLSQARKLPPLELMRSILTDSAKKFAHRSTLGNGTWTPY
AAATFEDERKKSAG

mRNA from alignment at Scaffold_519:230621..232357+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1007_8a-0001 ID=EsuBft1007_8a-0001|Name=EsuBft1007_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1737bp|location=Sequence derived from alignment at Scaffold_519:230621..232357+ (Ectocarpus subulatus male Bft15b)
ATGTTGCAACTTATTCGGCACTTATTCGGCGATGACCTGTCACAGGCTAG
GAAGCTACCGCCATTGGAGCTGATGAGGAGCATCCTCACTGATAGCGCCA
AGAAGTTCGCCCACCGTTCCACCCTCGGCAATGGCACATGGACACCCTAT
GCTGCCGCGACGTTCGAAGATGAGAGGAAGAAGTCCGCCGGGTAAGTGAC
AAGAGTGGAGAATGAACGGCCGCGTTTGGGTTTTTCTGTGTATGGGTACG
TGCTCTTGTGGTTTCGAAGAGACAACCTAGTTCCTGGAGGACTCTCCTGT
ACTTGCACGGACGGGTGGTGGGTTGCCAACGGGTGGGTGTTCCATGACAT
GTTTCGAGGTGCACGCACGCCGCCGAGATTCACATGTACTCACATGCACG
CCTTCGCCACGCGACGTTCATTATTCCAGGCTCGTCGCCTCCCCCACGGG
CAACCAGTTCTGCACGGTCGAGAACACCAACCTCGCCACCCTCAACACCC
GCGGCAACAGGGTCCTGCTGAGGTGAGGCGAGCCGGGGCAGAAGATGGAG
TGGTCCTGCACATGCGGGTTCCCCGCGAGATTCCAAATCCCTTGCTGCAA
CGTCATTGCCGTGGCTGGAGGTAAGCGATGTGCCTATTTAGTGGGCACAG
CAGTAGTCTTGTGGCCGAAAAAAACGATGAACGTGTTGCCAGGAGCCCTC
CAGTAGCACTCTGTGAGTGTGTTGTCGCGGAATCGATCGGATCACTTGCG
TGCTTAGTTGCGTGCTCACACGGCAAACCTGTTTTTGCGCTGCATGCTCT
GTCTTTGTCCTCTTGTCATAGTGGCGGGTCTTTTTGTTTGCTGTGTCTGT
TCATTTTAGTTGTTTTCTGCGTGGTTTTGTTTTTGTTTTCTTTATCTCTT
TTGTCCTGTCTTCCCCGGATAGTGTATTTTCTCCATCTTTGCGGAGTACC
AAGATGAACCAGGCGATGAACTACAAAATCTGGCCTGTGATTTTACCTTT
TTTTAGGCAGCGTAGCCTGTGACCACAGGAATCGCTCGGTCAAGTGTTTG
ATGACACAAGAAATAAGCGGTCTACGTTCGCGCACTTCCAGTTGAACGAA
CTAGGACCCTTTCTCGAAAGCGATTCACACACCCGCACCCGCAACGGCAG
CTTCGAGGTTGTGGTTACATGCGGTGCTCCGGCCACAATACGTGAAAGCC
AAAGTCTAACCGATGCCAATATGTCTTAATGTATTCCTTCTCATGCTCCA
TGATTGGAAAACAGGTGGCACGATACTTTACTTTCGGTCAGTCCGCCGTC
GCGCGTCAGTATCCCTTTCGGCCGCGGTCGGCAGAAACTAACCCACGCTT
ATTCACTCCTGTCATTTCCCTCTTCTGTCGCTGTCCATGTTGCTCCCTCC
TTCAATACACACCGAGGAGGACAAGATGGACGCTGTCATGACCCTCATGA
ACCCGGCCTATCGCCTCAAATACCACCGCCAGACCTACGGCGACGACGCG
TACCAGGTCATGCTGCCTGTGGCATCCACGCTGGAGGAAGATGACACCCT
GCTACCTCTTCTCCCCATGGATGGTTAGGCCGGCGCTCCCAAGAAACTTG
GGCCGAAAAAGTTCAAGGGGATCGCGGGGCGCGGGGACAAGTACGCTTCG
TCGTCGTTCAACACGCGAGTTTCTGAACTCGGCCCGACTGCATCCGGAAC
CACGGCGGCTCCCTTTCTGTCGCAGGGGGGTGCCACG

Coding sequence (CDS) from alignment at Scaffold_519:230621..232357+

>EsuBft1007_8a-0001 ID=EsuBft1007_8a-0001|Name=EsuBft1007_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=195bp|location=Sequence derived from alignment at Scaffold_519:230621..232357+ (Ectocarpus subulatus male Bft15b)
ATGTTGCAACTTATTCGGCACTTATTCGGCGATGACCTGTCACAGGCTAG
GAAGCTACCGCCATTGGAGCTGATGAGGAGCATCCTCACTGATAGCGCCA
AGAAGTTCGCCCACCGTTCCACCCTCGGCAATGGCACATGGACACCCTAT
GCTGCCGCGACGTTCGAAGATGAGAGGAAGAAGTCCGCCGGGTAA