EsuBft1007_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1007_4a-0001
Unique NameEsuBft1007_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_519contigScaffold_519:193188..195287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7425.NV18849-PA
ProteomeIdEsuBft1007_4
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1545
Hectar predicted targeting categorymitochondrion
Evalue9.04e-41
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-13
Date creation2016-06-13
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0043170
GO0003824
GO0044238
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_4aEsuBft1007_4aEctocarpus subulatus male Bft15bgeneScaffold_519 193188..195287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_4a-0001EsuBft1007_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_519 193353..193997 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_4a-0001-exonagat-exon-97083Ectocarpus subulatus male Bft15bexonScaffold_519 193188..194694 +
EsuBft1007_4a-0001-exonEsuBft1007_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_519 195250..195287 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_4a-0001-exonagat-five_prime_utr-35Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_519 193188..193352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_4a-0001-cdsEsuBft1007_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_519 193353..193997 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1007_4a-0001-exonagat-three_prime_utr-60Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_519 193998..194694 +
EsuBft1007_4a-0001-exonagat-three_prime_utr-61Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_519 195250..195287 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1007_4a-0001 ID=EsuBft1007_4a-0001|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1545bp|location=Sequence derived from alignment at Scaffold_519:193188..195287+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGCTGTTGAGGATTTCGCAGCAGAGGTTTGCCGAAGAGTTGGCTGCAGAG
TACGGAATTGAGTGGGGGAGGAGTGTGCCCTTGCCTGTGAGCGTGAAGCT
CACCGAAATTTGACGAGAACGAAGCGTGTGCTGACGTCCCGTTTCGCGAG
TTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACCAGGCCGGACATCGC
GAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGC
ACTGGAAGGCAGCACTTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGG
ATGGGGATTACATTTGAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGT
GTTTGTGGATGCCGACTATGCAAGCAAGGCAGCAGACCGTAGGTCGGTCT
CAGGAGGACTAGTGATGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGG
ACGCAGAAGTGCGTCACGCTCTCCACAACGGAAGCAGAGTATGTGGCAAT
TGCCGACGTCTTGAAGGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTA
TGTTGCCAGATGCAGGTATGCCGTGCATTCCGGTCTTCGAGGATAATCAG
GGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCAAACTCGAAGCA
CATCGATGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGA
TTTCGATTACGCATGTGACGCCGGAGTTTCAGCATGCAGATTTCTTGACG
AAGGCTATCAGCAAGGAATCTTTTGCGTTGCACAGAGACTTTGTGATGAA
TTTGCAGTGAAAGAAGTGTTTTCGGATCAAATCGTGTTTTTCCGCGGAGT
GGAAGAGAGAGGATATGTACGGGCTTGAACAAGAGATGGAGAGAGGCAAG
TGGAGATGGTAGTGCTTTGGAGAGTTAGTGTTAGGGATTTTTCTTGTTGA
TTTGGGAGAGTTGGTATGCGATTGATTATTTTCGGACGTATTGTATTGGT
GTTGGGATTTTGTATTTTCGTTTTCTTGGTTTTGTGTTTTGGGATGAACT
GGTATGAAAAGGATGACTTTGATATTTTCCCGGAGCATGACGATGCATAC
GAGCAGGGGGGATATTCGATATACTCGTAGCATAGTATGATGGTTGAGAT
GTTATGTACGTACGTACGAATATTGCAGTGATGAGATGCGGAGGAACAGG
AACTTTCTACATATTTTCCTTGGTTGTGAGAGGCTTTTGGTGAGGATTCA
GAGAGATTCGTTGTGTGAGAAAGCATGAAGGCGTGACTCGATACCGTGAT
GGTTTGACGAGCACGAGCACGCCCCCGATTAATACAACACTACAACACGA
CAAAACGGATACAACACGTTTCCCAACACGTCCCTACCCTACCACGGCCC
GTCATGGCCCAGCTGCTCTACACTCCCAACACAAAGAACTGAGCCACCGA
ATTATCGATCAACGTCTGCACTATACCCCCAGAAACATATCCGCTGGTTG
GAGAAAGGGTAACACATGGAGTCTGGCGTGACCGCCGATGGCGGT
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protein sequence of EsuBft1007_4a-0001

>EsuBft1007_4 ID=EsuBft1007_4|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=214bp
MWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITF
ERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCV
TLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQI
AHNPITNSNSKHIDVRHHFIRELVERKEISITHVTPEFQHADFLTKAISK
ESFALHRDFVMNLQ
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mRNA from alignment at Scaffold_519:193188..195287+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1007_4a-0001 ID=EsuBft1007_4a-0001|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2100bp|location=Sequence derived from alignment at Scaffold_519:193188..195287+ (Ectocarpus subulatus male Bft15b)
GGCTGTTGAGGATTTCGCAGCAGAGGTTTGCCGAAGAGTTGGCTGCAGAG
TACGGAATTGAGTGGGGGAGGAGTGTGCCCTTGCCTGTGAGCGTGAAGCT
CACCGAAATTTGACGAGAACGAAGCGTGTGCTGACGTCCCGTTTCGCGAG
TTGGTAGGATCTCTGATGTGGTTGGCCACTCAAACCAGGCCGGACATCGC
GAATGCAGTACGAGCAGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGC
ACTGGAAGGCAGCACTTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGG
ATGGGGATTACATTTGAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGT
GTTTGTGGATGCCGACTATGCAAGCAAGGCAGCAGACCGTAGGTCGGTCT
CAGGAGGACTAGTGATGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGG
ACGCAGAAGTGCGTCACGCTCTCCACAACGGAAGCAGAGTATGTGGCAAT
TGCCGACGTCTTGAAGGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTA
TGTTGCCAGATGCAGGTATGCCGTGCATTCCGGTCTTCGAGGATAATCAG
GGAGCGATTCAGATTGCGCACAACCCGATCACGAACTCAAACTCGAAGCA
CATCGATGTACGGCATCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGA
TTTCGATTACGCATGTGACGCCGGAGTTTCAGCATGCAGATTTCTTGACG
AAGGCTATCAGCAAGGAATCTTTTGCGTTGCACAGAGACTTTGTGATGAA
TTTGCAGTGAAAGAAGTGTTTTCGGATCAAATCGTGTTTTTCCGCGGAGT
GGAAGAGAGAGGATATGTACGGGCTTGAACAAGAGATGGAGAGAGGCAAG
TGGAGATGGTAGTGCTTTGGAGAGTTAGTGTTAGGGATTTTTCTTGTTGA
TTTGGGAGAGTTGGTATGCGATTGATTATTTTCGGACGTATTGTATTGGT
GTTGGGATTTTGTATTTTCGTTTTCTTGGTTTTGTGTTTTGGGATGAACT
GGTATGAAAAGGATGACTTTGATATTTTCCCGGAGCATGACGATGCATAC
GAGCAGGGGGGATATTCGATATACTCGTAGCATAGTATGATGGTTGAGAT
GTTATGTACGTACGTACGAATATTGCAGTGATGAGATGCGGAGGAACAGG
AACTTTCTACATATTTTCCTTGGTTGTGAGAGGCTTTTGGTGAGGATTCA
GAGAGATTCGTTGTGTGAGAAAGCATGAAGGCGTGACTCGATACCGTGAT
GGTTTGACGAGCACGAGCACGCCCCCGATTAATACAACACTACAACACGA
CAAAACGGATACAACACGTTTCCCAACACGTCCCTACCCTACCACGGCCC
GTCATGGCCCAGCTGCTCTACACTCCCAACACAAAGAACTGAGCCACCGA
ATTATCGATCAACGTCTGCACTATACCCCCAGAAACATATCCGCTGGTTG
GAGAAAGGTAAGAGAGGAGACAAGAGATTCGAAGTTGGGTCGGTTAGAGA
TGAATTGATCGATGCGAGGGGGAAAGCGACCACGACAGACTAGGCGATTT
AGGTTTTGGCCTCAGGCTCTTGTACGAAGAAAGGGTGTGCCGACGCCGAG
AAGCACTGGACATTCACTTGTTACGTGGTCTTTTTTTGGGCTGTCTCTTT
TCTCAAAGAGGGACAACTGACCAAGTCGTTAAGAAAGCGGCTCAGAGAAA
GGTGCATGAGTGCTTGAACTACGGCTGAGTAGAACAGGCCTTCGTCTACC
TGCGCTGTTCGGGTATGTACATCGCATGTGTGCATTGTGGAGGATGTGCA
CTCGCGCCAACTCGCGGGAAAATAATAACTGCTCGGCGAGCGGACGACCC
TTTCGTGCTACCGGCTGAACTGAACAACCAATGGTTGGTGTTGTTGGGTG
TTGTTAGTGTGCTCGTATGTGTGTGAGCCTCTTGCTTGATTGGATGATTG
AATTGTGCTCGAAATTCGCCGTTTCCCCACCTCCCTGCATGCATGTGCGC
CCGTTTTCCGAGGGTAACACATGGAGTCTGGCGTGACCGCCGATGGCGGT
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Coding sequence (CDS) from alignment at Scaffold_519:193188..195287+

>EsuBft1007_4a-0001 ID=EsuBft1007_4a-0001|Name=EsuBft1007_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=645bp|location=Sequence derived from alignment at Scaffold_519:193188..195287+ (Ectocarpus subulatus male Bft15b)
ATGTGGTTGGCCACTCAAACCAGGCCGGACATCGCGAATGCAGTACGAGC
AGTAGCGCGGTATTGCGCGTCTCCCAAGATGGTGCACTGGAAGGCAGCAC
TTGGTATTTTAGGGTACGTGCGTAGGACGAGTTGGATGGGGATTACATTT
GAGAGGGGAGTGGTCACTGGCATGAGCATGCAGGTGTTTGTGGATGCCGA
CTATGCAAGCAAGGCAGCAGACCGTAGGTCGGTCTCAGGAGGACTAGTGA
TGTGTGGGGGTGGGTGTGTGACTTGGTTTTCGAGGACGCAGAAGTGCGTC
ACGCTCTCCACAACGGAAGCAGAGTATGTGGCAATTGCCGACGTCTTGAA
GGAAGTGCTTTTCTTGAGGCAGGTTTGGCGTTTTATGTTGCCAGATGCAG
GTATGCCGTGCATTCCGGTCTTCGAGGATAATCAGGGAGCGATTCAGATT
GCGCACAACCCGATCACGAACTCAAACTCGAAGCACATCGATGTACGGCA
TCACTTTATCAGGGAACTGGTAGAGAGGAAGGAGATTTCGATTACGCATG
TGACGCCGGAGTTTCAGCATGCAGATTTCTTGACGAAGGCTATCAGCAAG
GAATCTTTTGCGTTGCACAGAGACTTTGTGATGAATTTGCAGTGA
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