EsuBft1006_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1006_7a-0001
Unique NameEsuBft1006_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:49452..49909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LBB5
ProteomeIdEsuBft1006_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length33
Hectar predicted targeting categoryother localisation
Evalue3.06e-38
EggNOG OGsKOG0392@1|root,KOG0392@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K15192
Descriptionhelicase activity
COG categoryL
BRITEko00000,ko01000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_7aEsuBft1006_7aEctocarpus subulatus male Bft15bgeneScaffold_472 49452..49909 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_7a-0001-exonEsuBft1006_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 49452..49770 -
EsuBft1006_7a-0001-exonagat-exon-51642Ectocarpus subulatus male Bft15bexonScaffold_472 49890..49909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_7a-0001-cdsEsuBft1006_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 49452..49770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_7a-0001EsuBft1006_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 49452..49909 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1006_7a-0001 ID=EsuBft1006_7a-0001|Name=EsuBft1006_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=339bp|location=Sequence derived from alignment at Scaffold_472:49452..49909- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTTAGCGAACGTGTGCAACTCGTGGCCGGAGCGGCGACCTACCT
CTGCCACACGGCGTGGTACGCGCGGGTCTCCGCGGCCTCGTGCCTGGAGA
GCTTGGCGCGCCTGGAGTACGGCCAAGAAGAACCGTCCCGGGCAGCCAAA
GCGAAGGAGGGAGGTGGCGGCGGCGACGCGCTGACGGACGAGCTGGCGAG
GGGATGGGTCGGCCTTGGGGACGTCCGGCTTGCCGAGGTCTTGGAGAGGG
GGGCGCTGTTGCTGAGCCACGGAGAAGATGTGGGTGCTGTTGCGGGTGTT
GCTCTCGGGGAGTCTGGTGGCGCTGGCTCGTGGCGGTAG
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protein sequence of EsuBft1006_7a-0001

>EsuBft1006_7 ID=EsuBft1006_7|Name=EsuBft1006_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=112bp
MALSERVQLVAGAATYLCHTAWYARVSAASCLESLARLEYGQEEPSRAAK
AKEGGGGGDALTDELARGWVGLGDVRLAEVLERGALLLSHGEDVGAVAGV
ALGESGGAGSWR
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mRNA from alignment at Scaffold_472:49452..49909-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1006_7a-0001 ID=EsuBft1006_7a-0001|Name=EsuBft1006_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=458bp|location=Sequence derived from alignment at Scaffold_472:49452..49909- (Ectocarpus subulatus male Bft15b)
ATGGCCCTTAGCGAACGTGTGTGCGTCGCCGTTGTTGCTCAGAACGAAGC
ACGCAGTGTGTCTAGCCCCTTTGAGTTTCTGGGCGCACGATCGCCGCTCC
TCGCAACGCCCCCACGAACGCCTGCTCGCCACGAAGCAGGCAACTCGTGG
CCGGAGCGGCGACCTACCTCTGCCACACGGCGTGGTACGCGCGGGTCTCC
GCGGCCTCGTGCCTGGAGAGCTTGGCGCGCCTGGAGTACGGCCAAGAAGA
ACCGTCCCGGGCAGCCAAAGCGAAGGAGGGAGGTGGCGGCGGCGACGCGC
TGACGGACGAGCTGGCGAGGGGATGGGTCGGCCTTGGGGACGTCCGGCTT
GCCGAGGTCTTGGAGAGGGGGGCGCTGTTGCTGAGCCACGGAGAAGATGT
GGGTGCTGTTGCGGGTGTTGCTCTCGGGGAGTCTGGTGGCGCTGGCTCGT
GGCGGTAG
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Coding sequence (CDS) from alignment at Scaffold_472:49452..49909-

>EsuBft1006_7a-0001 ID=EsuBft1006_7a-0001|Name=EsuBft1006_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=339bp|location=Sequence derived from alignment at Scaffold_472:49452..49909- (Ectocarpus subulatus male Bft15b)
ATGGCCCTTAGCGAACGTGTGCAACTCGTGGCCGGAGCGGCGACCTACCT
CTGCCACACGGCGTGGTACGCGCGGGTCTCCGCGGCCTCGTGCCTGGAGA
GCTTGGCGCGCCTGGAGTACGGCCAAGAAGAACCGTCCCGGGCAGCCAAA
GCGAAGGAGGGAGGTGGCGGCGGCGACGCGCTGACGGACGAGCTGGCGAG
GGGATGGGTCGGCCTTGGGGACGTCCGGCTTGCCGAGGTCTTGGAGAGGG
GGGCGCTGTTGCTGAGCCACGGAGAAGATGTGGGTGCTGTTGCGGGTGTT
GCTCTCGGGGAGTCTGGTGGCGCTGGCTCGTGGCGGTAG
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