EsuBft1005_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1005_6a-0001
Unique NameEsuBft1005_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:210145..216060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1005_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length145
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_6aEsuBft1005_6aEctocarpus subulatus male Bft15bgeneScaffold_576 210145..216060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_6a-0001EsuBft1005_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 210272..213304 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_6a-0001-exonagat-exon-70893Ectocarpus subulatus male Bft15bexonScaffold_576 210145..210311 +
EsuBft1005_6a-0001-exonagat-exon-70895Ectocarpus subulatus male Bft15bexonScaffold_576 213249..213327 +
EsuBft1005_6a-0001-exonagat-exon-70894Ectocarpus subulatus male Bft15bexonScaffold_576 214015..214131 +
EsuBft1005_6a-0001-exonEsuBft1005_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 214966..216060 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_6a-0001-exonagat-five_prime_utr-22Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 210145..210271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_6a-0001-cdsEsuBft1005_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 210272..210311 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_6a-0001-exonagat-three_prime_utr-41Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 213305..213327 +
EsuBft1005_6a-0001-exonagat-three_prime_utr-42Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 214015..214131 +
EsuBft1005_6a-0001-exonagat-three_prime_utr-43Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 214966..216060 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1005_6a-0001 ID=EsuBft1005_6a-0001|Name=EsuBft1005_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1458bp|location=Sequence derived from alignment at Scaffold_576:210145..216060+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCTCGGCCTGTACTCTGTGCTCTGCACGCACTTGCGTGCAACCTAGCG
CAGCAAACCACCGCCCCCGCAGCACAGCAGCTGAGCGACGCACGACCAGG
GGCTAGCAGAGTTCATCTTGTCCAGGAATGCCAGAGGCGGCAGTGAAGGC
AACAACATTGGGCGCAGCCTGGAACAACCGCGCCAGTGACGGGTATCGTT
GGCCATGTTGGGGGGCTTGCTGATAGCTCTTCTTCTGGGCTTGTTGGTAC
CTGTGTCGGCCCAAGTCGATCAAACGAAGCAGATCGCATGGATATGCTTC
GCGGTGTTTATCGTGGTGTTTATTGCGGGTTCGGTCTACGTGCGACACCG
GAGAACAGTGCGGGCCCGCCGGGGTCCTTCAAGTACTGATGACGCAGTAG
CCCCGGTTAGCGCATGGGGAAAGGCTGCCCCCCCCAAAGAGAACGGAAAA
GGCGGCTTCGGCCAATGTGTGGCAGCCGGTGCATGGGAGCGAGACGCATA
AGCCTCGTCATTTTGCTAACTTCCTCTCAAACATGGGGGGCCACGACGCA
TGGTTGACGACCAACTTCTTCTATTTGTTTCTTGCATGACCCCTTTTTCA
TGACACTGCTGTGCTCTCATGAGCCCACTTCGGAGGGAATCCGTGGATTC
CTCAAGATATAGTTGTTCACCCGATTGCATATATTTATGTTGTCTTCGTT
GCTGTTGCTGTTGTTGTTCCTTGTTACTCCACTGTCTGTTCCGCGTGCAC
TTTGGTCACTCTGTAGGAGTATAACTAGCGGGTGCCTCTGCCCGCAGCTA
TGGGTAAAATTCTCCTCACTCTCTTGGTAGAAAAAGCCGTAGGACCTTGT
TGTTACGCCTGCCTTGGAAGGCTGTTGTACGCCTCCGTACCTGCGTGCAC
CCTTGCCTGGCCACGTGCTTTTTCCGGTTACTTGGTGGTCACGTTTCTGT
GACATTTTTGTCGGCCTTCGATTCGGCGGCACGCGGGCGTGTTTCGGTGG
TTCGCACGGAATGAATGACAGACGTGTTGAAGGTCGGCAAGGGGCCTCTA
GAATTGACGCACAGGTGCATGTCCGTTATTTTTCGCCACGGCGGTTGCGG
TGAGCTAGCTTACGGATTTCAGGAGATGGGCTAGTTTTTGACCACAATTT
TGTTTACCTCGGCGACCACATGTATGTGTTGTTTCGTGCTGGCATCTCAT
ATATCATGATTTCATCACATCATGAGAGACTGTAGGGCATGGGGCGTGCG
GCAGCCAATGAGTACATACGTCCCCCCCTACGTCGTCCTTTTCCCTGCCT
GTTGCCTGTTTCCCCTACGGATGGCGCCAGCATGTTGTTATTTCTAGGTG
TTTCGCACATTCTTATTCGAACAAGCATCCGCCTCAATGGGGCAAATGAG
CGGTTATTGTTCTTACTACGCCGAGGGCCCCATACCGCGGAGACGGGTCT
CTCTTTCC
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protein sequence of EsuBft1005_6a-0001

>EsuBft1005_6 ID=EsuBft1005_6|Name=EsuBft1005_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=31bp
MPEAAVKATTLGAAWNNRASDGYRWPCWGAC
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mRNA from alignment at Scaffold_576:210145..216060+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1005_6a-0001 ID=EsuBft1005_6a-0001|Name=EsuBft1005_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5916bp|location=Sequence derived from alignment at Scaffold_576:210145..216060+ (Ectocarpus subulatus male Bft15b)
TGCCTCGGCCTGTACTCTGTGCTCTGCACGCACTTGCGTGCAACCTAGCG
CAGCAAACCACCGCCCCCGCAGCACAGCAGCTGAGCGACGCACGACCAGG
GGCTAGCAGAGTTCATCTTGTCCAGGAATGCCAGAGGCGGCAGTGAAGGC
AACAACATTGGGCGCAGGTATTGGGTGAGCTGAAGCAAGGCCACAACAGC
AACAGTAAAGCAAGTACATTTAAGAGTGAACACTTTGGAAGTCATCGCAC
ACCACGATCACGATGGTCACAGGTGACAGAATTAGAATTCTAAATATCCT
GTCGGTTCACCCTCCCGTCATCGCAGAGTTATGACCGCGAGAGGTCCCAC
CGGTACTTAAGGAAACCACACAACGGCGTACAGCTCCTACCGGACTCCGA
TTCTCACCTGTAATGCTTGCCCTGAGTCTGCTTGCTTTTTCATTCAAATG
TTGAACCACAGAACAGCAGCGGTGTAAACAGTAGCGGGGGTTGCCACGTC
CGCTCAAGCGCTTCTGTTGGTGAGACGCGCCTGCTACGCCTGCGATGACG
TAACACATCGGTCTTGTACGTGATGACATAAGCTGTATGTTTTCGTTTGC
TAGTGGTGTAAAATATCATGGGAACACCTCGACGTACTACCATATACATC
GAAGTACACAGCAGTTCCATCCGCACGCATCTTCGACCGAGAAGTTCGCG
GATTGGACATAGCGGATAGCGGCAGGAACGACGTCTGATGGTTTTCAGTG
TTTGTGGGCATTGGGAGCGTGACCCCAGCTGTTGCGGTTCGATTCAAGCC
CACTCGCCATTGTGAGATGGTCCACTGGCCGTCGAGTGTATTTGTATGCC
CTGGTACGCACTAAATATTTTCCCCACATCGGTGCTTGGTGTTCATTTTC
CGATAGCCTTCGCGACGACAAGTAGGCTTGGTTTTAGTAGGCGGTACGGT
GGGGTTGGGGTTAGTGTTTGCGATACGAACCCCTGGGCTCTTATTTTATA
GAGTAGATGTAGAATCCTCGCGAACGTGGTCCTTATTTTGCCGTATCGTA
GTTGACGGAGACGTTTTTTTGTGCTAACGGAGCGCCCCCATTCCCTGTTG
GGCATGCACGTGTTTGCTCGCGGTCCCGCCGGTAGGCTGGGCATGTGTTC
ACCTGGGATGTATATGACGAAAAACACAGCTAAATCATGCCGTCGGTATG
CATCGAGCCCCCTGCCCCGATGGAGCGGCCGGGCTAAACACTACACCGAA
CGTACACCGCTCTACCTCGAGTGCAAAAGAGGGGATCAGGCGTCTGCCAG
TACAAACGCTTTCGGTTTTCCCACGTCCCAACCGGTGCATGGTTTTCTGT
GCCCCCTGCCATTCGACCGTCTACAGTAGTAGACGGGTTTTTTTTTTCGC
AGCCTGGAGGTTCCGGTCCTCTCCATGTGATTAGTACCCACAGTTGCGTT
GTTCCCCTTCAAAAGGCAGCATTGCTGTTTCTGGCACACCGCTACTGTTG
TACTATGGGTTGTGGACAAAAGCGTCTCCTGCTGCTCTGAGACCACCACC
AAGACCACCACCACCACGCATTGCGGTATCACAACTGGGAGAATGACCCC
CTGACGTCCCCGCTGCCAGACCCTGAATTTGTCTGGGTTTATTTACTCCA
GTAGAGATCGTTGGCACTACCGAGCTGGCCCCCGGTGTGGTATTTCCTTA
CTCTTGCTGTTTTGCGGACGGCGTGAATCTCGTTCTGCGGTCCCTATTCC
ATTAGACCGCGGGCGGGTGTAGCGCCTACCGCCCACTCTAGCGCCGTCGG
ACTCCCCCTCCTTGTCTCCCTCTCCCAAGAGGGCTCGCAGCAGGTCCAAC
AGGTGCTGAAGTTGGCTCGAGAGGCCTGACACTTTACCCTCCAGCTCGTT
GAGTAGCAAGACAGGGTCAACGAGCTGGGTGGCAAAGTTTATGGCCTCTC
GAGCCAACTTCAGCAGCTGCCGGACCTGCTGCGAGCCGCCTTAGGAAAGG
GCGAGCCACCTTAAGAAGGGGAGAGAAGGAGGGGGAGTCCGGCAGGACCG
AGTTTGACACCATGCATGTCCCCTCTTGCGGTTCCTCTCTTGCTCACGGA
TGACATAGGTGGAATCAGCGCCAACATCGGTACCACTCCTATCAAAACGG
GGTGTTCGTGTATGTATCCCCTTGCGTATTTTGAATGGACTCCTGAATTA
CGGTATTGGAAGGACAGCAGAAGAGAGCAAGACTCCCGAGACAAGATGGA
AGAGAGAGAACAAACAATCACACACACACGAACAGGCTGAATCCTTGTCG
CGACAAGAAAAGAGTGGTACAGAATAGCCACAAGCACTGAAAGAGTAACA
TGAACGCGGATGTTGCAGAAACGCTAAGTGTGCCGTAAGGCCTTCATCCC
GTGAAACCCCGGGTGGTGCGGCCAACAACATACCGACAGGTGTAAAACCC
GACGTCCAGGATGAATGGGATGGTATGCATACTGTCGGAGCCTTCTTACT
TTTGGTTTATTTCATTGATATCGCGTCATGTGTTGATATATACTGCTTCC
AATTGTTTTCCATGTAGAAAGTCCGTGATGTACCCTCCCGGGGTGCTCAG
GCTGTGACCACGGATCACGTCCGCGTCAAGTCGGCCAGGACGGATGGTAG
AAGGTATTGAGCAAACAACGGATCGTTTTTTTTGTGGGACTGCAACGTCA
ACAACTATCGTCGCAGGGCGAACCCCACGGAGACGCTCTTATGTTGCGGT
AAACTGGCGTGCACTGAAGCCTTTCTCAAGCCGTTCCAGGCCGCCGCCCG
CCGATTGGTATTGCAGCACCCCTTTAAGCTTGAGGGGTTATGTTGTTGGT
GTGTTGTAAGTGCATTGTCCCCCTGGTTGCGGTTGTCATCAAACGGGGAC
ACCAGTGTTTACACGACTAGGTTCTGGCCCAGAAAACCTCGCCAGTATCA
ACGGATCAAAGAGAGCGAGAGCCCGTTATTGACCCGTCACTTGATAACAC
GCCGTGTCTTTTAAACTGGTTATGCAGTAAAGAGGAAAACATTCTGACGC
AATGGTGGCTTGATCTCTTATCCCCGTCCCCCTCTACTTGACGTACCTCC
GCAGCCTGGAACAACCGCGCCAGTGACGGGTATCGTTGGCCATGTTGGGG
GGCTTGCTGATAGCTCTTCTTCTGGGCTTGTTGGTGAGCAAACGGTGTAA
CACACTTTGACACCCCGACAGAGAATGTTCAGGATGTTCCATGTCCTCCC
TTTCGCCAAGACTGCACTTTGAACCCACGTGGAATGAGATAAAGCACCGC
TGTTCGTCGACCGACGTAGCGCTTGGCAGGCATCTCGGCTCGTGCGCGAG
CCTGCCGTAGGTCTTGGTTGTCGGTGCAAGGTGTCGCAAACATTGCAAGG
AAGTGAATTTGGATATTTGGTTCTGGATGGTACATGCCGGGACCTACTAC
TCCTGGTGTTCAACTTGTTGGCTACTTTCGCGTTTTACAATCATGCCGAG
CATCGATCTGTCATTTTCTTTCGTGTGCGCGTGGCGCGAGTTCCGGGCGC
TTGAACCGTCAAGTCTTGGCTGCGTGTCTTGGCCTCATCACGCGTGTGCA
GGTAGGTGTGCGTGTCTCAAGGTTCACAATCCCACTTCGCAACGCCCGCT
CCGTGTGCTCCACTCAATGTGTCTCCCGCGATACCCTATCGCAACCTAGG
CCTGTCCTCCATCGGCCGTTTTGCTTGTATGACGCAGAATAAGAAGGTGG
AATTACTTGAAATTAGTATAGAAATAAAGTTTGTGTATCTAAATCGAAAA
TAAAACGGCCGATGGAGGACAGACCTATCGCAACCCTCCGCCTCAACATT
TTCCCTGGCTCGTCCGACAGGTACCTGTGTCGGCCCAAGTCGATCAAACG
AAGCAGATCGCATGGATATGCTTCGCGGTGTTTATCGTGGTGTTTATTGC
GGGTTCGGTCTACGTGCGACACCGGAGAACAGTGCGGGTGAGAGGACGGG
AGGCTCTGCATATGGGAGAGCTAGGGTAGGGGGGGAGCGTACTCTTATGG
TTTGCATACCTTAGAGGTTAAGACCATTGACCACGCGTCCACGAGAGGAC
GGAGCATTGTTCCCACAAGACAGACCACATGGCCAATCGTTCCTTCCTAC
TTTCCCAAATGTGGGGGGCGCGTATCAGGATTAAAGACGAGCGTCGTGAA
GTTCGGCCGCAGAAATGAACACTGTATGACGTAGGGGCACTCCCTGTTCT
CCACCTCCTTGCTTGTGAGACCAAACGGCGACTCTCCGGGGGACAGTCTC
ACGCGTTGTCGTTGTACAGCAATGCCGATATCTGCATCCCCACCCCCACC
CCAACCCTTGGCGCCACAGTCGCTTTGGTGGAGTTAGAAGGCGTTAAATA
TATGGTGTTCGATGTGTGACTTAGCGAGCTGGTAGCCACGGCATGGAAAT
AGTCAGATACATGCACGTCGTCGCTCTGGACTCAGAGGTGAACTGTACTT
CGTCATCAAGTAACGTTGCGGCAGCCATACCCGTGGTAGTTACGAGTGCG
TCGGAAAAAAAGAAACCCGTCATGGCACAGCTAGCATCTGCACGACTCTG
GTGCACGCTCTCTTGCAGGCGCTGCGCTACTCGTACTCTAGTTTCGCACG
TGGTATTTGCCTCTGGTACACATTCTCTTGAGTAAATGCTCTCTCACAAA
AAGCACTGCCCCACTTGTACTCTTGTGTACTCAAGTCCAGCTGCAAATGA
GTTTGCCCCGCCAGCCTCCCCACACATGCGCACTCTGCCCCCTCCCCCCC
CATTCTTTCGCCGTCTGACAGGCCCGCCGGGGTCCTTCAAGTACTGATGA
CGCAGTAGCCCCGGTTAGCGCATGGGGAAAGGCTGCCCCCCCCAAAGAGA
ACGGAAAAGGCGGCTTCGGCCAATGTGTGGCAGCCGGTGCATGGGAGCGA
GACGCATAAGCCTCGTCATTTTGCTAACTTCCTCTCAAACATGGGGGGCC
ACGACGCATGGTTGACGACCAACTTCTTCTATTTGTTTCTTGCATGACCC
CTTTTTCATGACACTGCTGTGCTCTCATGAGCCCACTTCGGAGGGAATCC
GTGGATTCCTCAAGATATAGTTGTTCACCCGATTGCATATATTTATGTTG
TCTTCGTTGCTGTTGCTGTTGTTGTTCCTTGTTACTCCACTGTCTGTTCC
GCGTGCACTTTGGTCACTCTGTAGGAGTATAACTAGCGGGTGCCTCTGCC
CGCAGCTATGGGTAAAATTCTCCTCACTCTCTTGGTAGAAAAAGCCGTAG
GACCTTGTTGTTACGCCTGCCTTGGAAGGCTGTTGTACGCCTCCGTACCT
GCGTGCACCCTTGCCTGGCCACGTGCTTTTTCCGGTTACTTGGTGGTCAC
GTTTCTGTGACATTTTTGTCGGCCTTCGATTCGGCGGCACGCGGGCGTGT
TTCGGTGGTTCGCACGGAATGAATGACAGACGTGTTGAAGGTCGGCAAGG
GGCCTCTAGAATTGACGCACAGGTGCATGTCCGTTATTTTTCGCCACGGC
GGTTGCGGTGAGCTAGCTTACGGATTTCAGGAGATGGGCTAGTTTTTGAC
CACAATTTTGTTTACCTCGGCGACCACATGTATGTGTTGTTTCGTGCTGG
CATCTCATATATCATGATTTCATCACATCATGAGAGACTGTAGGGCATGG
GGCGTGCGGCAGCCAATGAGTACATACGTCCCCCCCTACGTCGTCCTTTT
CCCTGCCTGTTGCCTGTTTCCCCTACGGATGGCGCCAGCATGTTGTTATT
TCTAGGTGTTTCGCACATTCTTATTCGAACAAGCATCCGCCTCAATGGGG
CAAATGAGCGGTTATTGTTCTTACTACGCCGAGGGCCCCATACCGCGGAG
ACGGGTCTCTCTTTCC
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Coding sequence (CDS) from alignment at Scaffold_576:210145..216060+

>EsuBft1005_6a-0001 ID=EsuBft1005_6a-0001|Name=EsuBft1005_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=96bp|location=Sequence derived from alignment at Scaffold_576:210145..216060+ (Ectocarpus subulatus male Bft15b)
ATGCCAGAGGCGGCAGTGAAGGCAACAACATTGGGCGCAGCCTGGAACAA
CCGCGCCAGTGACGGGTATCGTTGGCCATGTTGGGGGGCTTGCTGA
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